Strain Fitness in Pseudomonas putida KT2440 around PP_3137

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
3,551,380	+		PP_3135	0.55	-0.1
3,551,381	-		PP_3135	0.56	-0.8
3,551,441	-		PP_3135	0.62	-3.1
3,551,444	-				+1.3
3,551,501	-		PP_3135	0.68	-1.9
3,551,587	+		PP_3135	0.77	-2.6
3,551,612	-		PP_3135	0.80	-2.7
3,551,803	+				-0.3
3,551,803	+				-1.4
3,551,803	+				-0.6
3,551,803	+				-2.3
3,551,803	+				-1.6
3,551,803	+				-2.0
3,551,804	-				-0.8
3,551,804	-				+0.1
3,551,804	-				-0.1
3,551,915	+		PP_3136	0.19	+0.1
3,551,916	-		PP_3136	0.19	-0.6
3,551,958	+		PP_3136	0.27	-0.4
3,551,958	+		PP_3136	0.27	-1.1
3,551,959	-		PP_3136	0.28	-0.5
3,551,959	-		PP_3136	0.28	-1.5
3,552,072	+		PP_3136	0.49	-0.3
3,552,203	+		PP_3136	0.74	-1.8
3,552,253	+		PP_3136	0.84	+1.3
3,552,253	+		PP_3136	0.84	-2.1
3,552,344	-				-2.2
3,552,443	+		PP_3137	0.10	-2.2
3,552,443	+		PP_3137	0.10	-1.0
3,552,443	+		PP_3137	0.10	-1.6
3,552,443	+		PP_3137	0.10	-3.3
3,552,443	+		PP_3137	0.10	-3.0
3,552,444	-		PP_3137	0.10	-1.3
3,552,444	-		PP_3137	0.10	-2.1
3,552,504	+		PP_3137	0.16	-1.1
3,552,505	-		PP_3137	0.16	+1.8
3,552,600	+				+0.1
3,552,600	+		PP_3137	0.26	+0.9
3,552,600	+		PP_3137	0.26	-0.0
3,552,601	-		PP_3137	0.26	+0.4
3,552,976	+		PP_3137	0.65	-3.0
3,553,013	+		PP_3137	0.68	+0.5
3,553,014	-		PP_3137	0.69	-2.0
3,553,014	-		PP_3137	0.69	-0.1
3,553,086	+		PP_3137	0.76	-1.4
3,553,086	+		PP_3137	0.76	-2.6
3,553,086	+		PP_3137	0.76	+1.0
3,553,087	-		PP_3137	0.76	-1.5
3,553,151	+		PP_3137	0.83	+0.1
3,553,152	-		PP_3137	0.83	-2.3
3,553,313	+				-1.7
3,553,314	-				+0.0
3,553,363	+				-2.1
3,553,364	-				+1.7
3,553,380	-				+0.8
3,553,407	-				-1.6
3,553,407	-				-0.9
3,553,517	-		PP_3138	0.18	+0.3
3,553,538	+		PP_3138	0.20	-0.7
3,553,538	+		PP_3138	0.20	-0.8
3,553,538	+		PP_3138	0.20	+0.1
3,553,539	-				-0.5
3,553,539	-		PP_3138	0.20	+0.6
3,553,539	-		PP_3138	0.20	+0.2
3,553,539	-		PP_3138	0.20	-0.0
3,553,850	-		PP_3138	0.51	+0.9
3,553,850	-		PP_3138	0.51	+0.1
3,553,877	+		PP_3138	0.54	+0.3
3,553,878	-		PP_3138	0.54	-0.9
3,553,878	-		PP_3138	0.54	-1.9
3,553,976	+		PP_3138	0.64	-0.0
3,553,976	+				-0.1
3,553,976	+		PP_3138	0.64	+0.1
3,553,977	-		PP_3138	0.64	+0.3
3,553,977	-		PP_3138	0.64	-0.3
3,553,977	-		PP_3138	0.64	-0.6
3,554,055	-		PP_3138	0.72	-2.6
3,554,121	+		PP_3138	0.79	-1.3
3,554,121	+		PP_3138	0.79	-1.1
3,554,302	-				+1.1
3,554,302	-				+0.8