Strain Fitness in Pseudomonas putida KT2440 around PP_3135

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
3,550,005	-				+0.2
3,550,005	-				-1.9
3,550,005	-				-0.1
3,550,005	-				-2.1
3,550,145	+				-1.9
3,550,146	-				-0.1
3,550,146	-				-0.7
3,550,146	-				-1.8
3,550,175	+				-1.1
3,550,176	-				-0.8
3,550,238	+		PP_3134	0.12	-0.4
3,550,239	-		PP_3134	0.12	-0.5
3,550,306	-		PP_3134	0.22	-1.3
3,550,306	-		PP_3134	0.22	-1.1
3,550,347	+				-1.3
3,550,347	+		PP_3134	0.28	+0.0
3,550,347	+		PP_3134	0.28	+1.3
3,550,348	-		PP_3134	0.28	-1.6
3,550,348	-		PP_3134	0.28	-2.0
3,550,401	-		PP_3134	0.36	-0.5
3,550,432	+		PP_3134	0.40	-3.7
3,550,436	+		PP_3134	0.41	+1.1
3,550,436	+		PP_3134	0.41	-2.7
3,550,437	-		PP_3134	0.41	+0.1
3,550,493	-		PP_3134	0.49	+0.2
3,550,493	-		PP_3134	0.49	-1.7
3,550,493	-		PP_3134	0.49	-0.5
3,550,668	+		PP_3134	0.74	-1.1
3,550,668	+		PP_3134	0.74	-1.0
3,550,669	-		PP_3134	0.74	-2.8
3,550,669	-		PP_3134	0.74	-2.3
3,550,743	+		PP_3134	0.85	-1.8
3,550,782	+				+0.3
3,550,782	+				-0.7
3,550,783	-				+0.6
3,550,827	+				-1.0
3,550,827	+				-2.7
3,550,957	+		PP_3135	0.11	-1.1
3,550,958	-		PP_3135	0.11	-2.1
3,551,101	+				+2.4
3,551,102	-		PP_3135	0.26	-0.8
3,551,102	-		PP_3135	0.26	-3.2
3,551,102	-		PP_3135	0.26	-0.2
3,551,102	-		PP_3135	0.26	-1.1
3,551,102	-		PP_3135	0.26	-3.0
3,551,119	-		PP_3135	0.28	-0.8
3,551,164	+		PP_3135	0.33	-1.6
3,551,164	+		PP_3135	0.33	+0.4
3,551,165	-		PP_3135	0.33	-0.2
3,551,165	-		PP_3135	0.33	-1.8
3,551,245	+		PP_3135	0.41	-1.4
3,551,380	+		PP_3135	0.55	-0.1
3,551,381	-		PP_3135	0.56	-0.8
3,551,441	-		PP_3135	0.62	-3.1
3,551,444	-				+1.3
3,551,501	-		PP_3135	0.68	-1.9
3,551,587	+		PP_3135	0.77	-2.6
3,551,612	-		PP_3135	0.80	-2.7
3,551,803	+				-0.3
3,551,803	+				-1.4
3,551,803	+				-0.6
3,551,803	+				-2.3
3,551,803	+				-1.6
3,551,803	+				-2.0
3,551,804	-				-0.8
3,551,804	-				+0.1
3,551,804	-				-0.1
3,551,915	+		PP_3136	0.19	+0.1
3,551,916	-		PP_3136	0.19	-0.6
3,551,958	+		PP_3136	0.27	-0.4
3,551,958	+		PP_3136	0.27	-1.1
3,551,959	-		PP_3136	0.28	-0.5
3,551,959	-		PP_3136	0.28	-1.5
3,552,072	+		PP_3136	0.49	-0.3
3,552,203	+		PP_3136	0.74	-1.8
3,552,253	+		PP_3136	0.84	+1.3
3,552,253	+		PP_3136	0.84	-2.1
3,552,344	-				-2.2
3,552,443	+		PP_3137	0.10	-2.2
3,552,443	+		PP_3137	0.10	-1.0
3,552,443	+		PP_3137	0.10	-1.6
3,552,443	+		PP_3137	0.10	-3.3
3,552,443	+		PP_3137	0.10	-3.0
3,552,444	-		PP_3137	0.10	-1.3
3,552,444	-		PP_3137	0.10	-2.1
3,552,504	+		PP_3137	0.16	-1.1
3,552,505	-		PP_3137	0.16	+1.8
3,552,600	+				+0.1
3,552,600	+		PP_3137	0.26	+0.9
3,552,600	+		PP_3137	0.26	-0.0
3,552,601	-		PP_3137	0.26	+0.4