Strain Fitness in Pseudomonas putida KT2440 around PP_3130

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
3,542,021	+		PP_3129	0.27	-0.3
3,542,021	+		PP_3129	0.27	-2.5
3,542,021	+		PP_3129	0.27	-0.3
3,542,025	+		PP_3129	0.28	-1.7
3,542,025	+		PP_3129	0.28	+0.1
3,542,026	-		PP_3129	0.28	-1.0
3,542,026	-		PP_3129	0.28	-0.4
3,542,026	-		PP_3129	0.28	-1.1
3,542,073	+		PP_3129	0.33	-0.0
3,542,201	+		PP_3129	0.46	-0.6
3,542,201	+		PP_3129	0.46	+1.1
3,542,201	+		PP_3129	0.46	+1.1
3,542,250	-		PP_3129	0.51	+0.9
3,542,265	+		PP_3129	0.53	+0.3
3,542,266	-		PP_3129	0.53	-1.0
3,542,266	-		PP_3129	0.53	-2.0
3,542,266	-		PP_3129	0.53	-0.5
3,542,319	+		PP_3129	0.58	+0.0
3,542,319	+		PP_3129	0.58	+0.8
3,542,320	-		PP_3129	0.58	+1.0
3,542,379	+		PP_3129	0.64	-0.3
3,542,472	+		PP_3129	0.74	-1.5
3,542,472	+		PP_3129	0.74	-0.3
3,542,473	-		PP_3129	0.74	-0.9
3,542,476	-		PP_3129	0.74	-1.0
3,542,691	+				-1.1
3,542,716	-				-0.8
3,542,823	-				+0.0
3,542,829	+				-2.4
3,542,830	-				+2.0
3,542,841	-				+0.4
3,542,856	+				-0.1
3,542,856	+				-0.6
3,542,856	+				-1.3
3,542,856	+				-0.0
3,542,857	-				+0.3
3,542,857	-				-1.3
3,542,857	-				+0.2
3,542,860	+				+0.1
3,542,872	+				+0.0
3,542,872	+				+0.3
3,542,872	+				-0.8
3,542,873	-				+0.7
3,542,873	-				-1.1
3,542,873	-				-0.3
3,542,873	-				-0.2
3,542,880	+				-1.3
3,542,880	+				-0.9
3,542,881	-				-0.1
3,542,881	-				+0.4
3,542,896	-				-2.3
3,542,896	-				-0.3
3,543,128	+		PP_3130	0.12	-2.0
3,543,207	+		PP_3130	0.15	+0.2
3,543,208	-		PP_3130	0.15	-3.4
3,543,208	-		PP_3130	0.15	-0.8
3,543,208	-		PP_3130	0.15	-2.7
3,543,415	+		PP_3130	0.23	-0.7
3,543,415	+		PP_3130	0.23	-1.8
3,543,438	+		PP_3130	0.23	-0.8
3,543,438	+		PP_3130	0.23	+0.0
3,543,552	+		PP_3130	0.28	-1.0
3,543,607	-		PP_3130	0.30	-0.6
3,543,607	-		PP_3130	0.30	-1.7
3,543,607	-		PP_3130	0.30	-0.7
3,543,612	+		PP_3130	0.30	-2.1
3,543,612	+		PP_3130	0.30	-2.9
3,543,660	+		PP_3130	0.32	-1.5
3,543,813	+		PP_3130	0.38	-0.7
3,543,814	-		PP_3130	0.38	-1.5
3,543,814	-		PP_3130	0.38	-0.6
3,543,893	-		PP_3130	0.41	-0.4
3,544,062	+		PP_3130	0.47	-0.1
3,544,062	+		PP_3130	0.47	-1.2
3,544,063	-		PP_3130	0.47	-2.6
3,544,113	+		PP_3130	0.49	-2.7
3,544,192	-		PP_3130	0.52	-1.2
3,544,213	-		PP_3130	0.53	-0.5
3,544,260	+		PP_3130	0.55	-1.5
3,544,261	-		PP_3130	0.55	-0.6
3,544,261	-		PP_3130	0.55	-2.4
3,544,371	+		PP_3130	0.59	+0.7
3,544,371	+		PP_3130	0.59	-1.9
3,544,371	+		PP_3130	0.59	-1.3
3,544,371	+		PP_3130	0.59	-0.4
3,544,371	+		PP_3130	0.59	-2.5
3,544,371	+		PP_3130	0.59	-1.3
3,544,371	+		PP_3130	0.59	-0.2
3,544,372	-		PP_3130	0.59	+0.1
3,544,372	-		PP_3130	0.59	-0.8
3,544,372	-		PP_3130	0.59	-0.3
3,544,873	-		PP_3130	0.78	-2.6
3,544,873	-		PP_3130	0.78	-0.5
3,545,193	+				-1.3
3,545,194	-				+1.0
3,545,226	+				-0.4
3,545,226	+				-1.0
3,545,227	-				-2.8
3,545,227	-				-3.7
3,545,404	-				+1.4
3,545,404	-				+0.1
3,545,404	-				-1.0
3,545,423	-				-0.8
3,545,423	-				-1.8
3,545,423	-				-0.7
3,545,435	+				-0.6
3,545,435	+				-1.1
3,545,435	+				-1.4
3,545,435	+				-0.6
3,545,446	+				-1.2
3,545,446	+				-0.5
3,545,446	+				-0.7
3,545,447	-				-0.3
3,545,507	+				-0.2
3,545,507	+				-2.0
3,545,508	-				-0.6
3,545,508	-				+1.2
3,545,508	-				-1.8
3,545,529	+				+1.4
3,545,529	+				-0.4
3,545,538	-				-0.7
3,545,538	-				+0.0
3,545,538	-				+1.9
3,545,750	+		PP_3131	0.21	-2.2
3,545,751	-		PP_3131	0.21	-1.7
3,545,995	+		PP_3131	0.37	-0.8
3,545,996	-		PP_3131	0.37	+1.5
3,546,149	+		PP_3131	0.47	-2.6
3,546,149	+		PP_3131	0.47	+0.9
3,546,149	+		PP_3131	0.47	-0.4
3,546,150	-		PP_3131	0.47	-0.3
3,546,194	+		PP_3131	0.50	-0.2
3,546,194	+		PP_3131	0.50	-0.4
3,546,195	-		PP_3131	0.50	-1.0
3,546,305	+		PP_3131	0.57	-0.4
3,546,326	+		PP_3131	0.58	-1.0
3,546,326	+		PP_3131	0.58	+0.1
3,546,327	-		PP_3131	0.58	-1.0
3,546,428	+		PP_3131	0.65	-0.2
3,546,428	+		PP_3131	0.65	-1.1
3,546,429	-		PP_3131	0.65	-1.2
3,546,429	-		PP_3131	0.65	+0.3