Strain Fitness in Pseudomonas putida KT2440 around PP_2847

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
3,249,798	-		PP_2845	0.83	+1.3
3,249,940	-				+1.3
3,250,001	+				+0.0
3,250,002	-				-0.2
3,250,114	+				-1.1
3,250,114	+				+0.0
3,250,114	+				-1.1
3,250,115	-				+0.3
3,250,117	-				+1.1
3,250,473	+		PP_2846	0.75	+1.2
3,250,473	+		PP_2846	0.75	+0.6
3,250,473	+		PP_2846	0.75	+0.1
3,250,515	-		PP_2846	0.84	-1.4
3,250,575	+				-0.7
3,250,990	-		PP_2847	0.68	-1.1
3,250,990	-		PP_2847	0.68	-2.4
3,251,229	+		PP_2848	0.10	+0.1
3,251,230	-		PP_2848	0.10	-0.2
3,251,362	+		PP_2848	0.30	-0.8
3,251,379	+				-0.5
3,251,813	-				-0.4
3,251,813	-				-1.1
3,251,813	-				+0.7
3,251,856	+				-2.4
3,251,857	-				+0.1
3,251,979	+		PP_2849	0.21	-0.7
3,251,979	+		PP_2849	0.21	+0.2
3,251,979	+				-0.3
3,251,980	-		PP_2849	0.21	+0.7
3,251,980	-		PP_2849	0.21	+2.3