Strain Fitness in Pseudomonas putida KT2440 around PP_2019

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
2,290,689	+				-0.7
2,290,690	-				-0.9
2,290,808	+		PP_2018	0.16	-0.4
2,291,025	+		PP_2018	0.39	-0.6
2,291,025	+		PP_2018	0.39	-3.5
2,291,025	+		PP_2018	0.39	+0.2
2,291,025	+		PP_2018	0.39	-1.5
2,291,026	-		PP_2018	0.39	-0.3
2,291,026	-		PP_2018	0.39	-0.9
2,291,385	-		PP_2018	0.77	-1.9
2,291,473	-		PP_2018	0.86	-2.8
2,291,626	+				-1.4
2,291,626	+				-0.0
2,291,626	+				+0.7
2,291,627	-				-1.0
2,291,627	-				-2.4
2,291,627	-				+0.5
2,291,627	-				+0.1
2,291,627	-				+0.4
2,291,627	-				-0.1
2,291,900	+		PP_2019	0.12	+0.0
2,291,900	+		PP_2019	0.12	+0.5
2,291,900	+		PP_2019	0.12	+0.0
2,291,901	-		PP_2019	0.12	+0.4
2,291,901	-		PP_2019	0.12	-1.0
2,291,901	-		PP_2019	0.12	-0.8
2,291,901	-		PP_2019	0.12	-0.5
2,291,901	-		PP_2019	0.12	-3.3
2,291,901	-		PP_2019	0.12	-1.3
2,291,939	+		PP_2019	0.14	-0.7
2,291,939	+		PP_2019	0.14	-2.9
2,291,940	-		PP_2019	0.14	-2.0
2,291,940	-		PP_2019	0.14	-1.3
2,292,044	-		PP_2019	0.18	-1.1
2,292,051	-		PP_2019	0.19	-0.6
2,292,173	+		PP_2019	0.24	-0.8
2,292,173	+		PP_2019	0.24	-0.0
2,292,174	-		PP_2019	0.24	-1.5
2,292,215	+		PP_2019	0.25	-3.1
2,292,215	+		PP_2019	0.25	-1.1
2,292,216	-		PP_2019	0.25	-0.6
2,292,392	+		PP_2019	0.33	-1.6
2,292,393	-		PP_2019	0.33	-2.8
2,292,483	+		PP_2019	0.37	-1.8
2,292,797	+		PP_2019	0.50	-2.9
2,292,798	-		PP_2019	0.50	-0.3
2,292,950	+		PP_2019	0.56	-3.1
2,292,951	-		PP_2019	0.56	-0.3
2,293,016	+		PP_2019	0.59	-0.7
2,293,050	-				-0.6
2,293,050	-		PP_2019	0.60	-2.3
2,293,154	+		PP_2019	0.65	-1.9
2,293,304	+		PP_2019	0.71	+0.8
2,293,517	+		PP_2019	0.80	-2.6
2,293,518	-		PP_2019	0.80	-0.1
2,293,518	-		PP_2019	0.80	-2.0
2,293,584	+		PP_2019	0.82	-3.0
2,293,584	+		PP_2019	0.82	+0.1
2,293,628	+		PP_2019	0.84	-1.5
2,293,628	+		PP_2019	0.84	-2.0
2,293,628	+		PP_2019	0.84	+0.0
2,293,628	+		PP_2019	0.84	-2.8
2,293,628	+		PP_2019	0.84	+0.5
2,293,629	-		PP_2019	0.84	+0.6
2,293,629	-		PP_2019	0.84	-0.8
2,293,629	-		PP_2019	0.84	-3.3
2,293,629	-		PP_2019	0.84	-2.5
2,293,697	+		PP_2019	0.87	-2.2
2,293,697	+		PP_2019	0.87	+0.2
2,293,698	-		PP_2019	0.87	+1.9
2,293,706	+		PP_2019	0.88	-0.8
2,293,706	+		PP_2019	0.88	-0.6
2,293,706	+		PP_2019	0.88	-0.2
2,293,706	+		PP_2019	0.88	-3.2
2,293,707	-		PP_2019	0.88	-3.7
2,293,707	-		PP_2019	0.88	-3.1
2,293,707	-		PP_2019	0.88	-2.8
2,293,707	-		PP_2019	0.88	-1.7
2,293,707	-		PP_2019	0.88	-0.7
2,293,708	+				-0.2
2,293,712	+		PP_2019	0.88	+0.1
2,293,712	+		PP_2019	0.88	-3.6
2,293,712	+		PP_2019	0.88	-2.0
2,293,712	+		PP_2019	0.88	-2.2
2,293,713	-		PP_2019	0.88	-1.9
2,293,713	-		PP_2019	0.88	-2.7
2,293,713	-		PP_2019	0.88	+0.7
2,293,763	+		PP_2019	0.90	-1.0
2,293,763	+		PP_2019	0.90	-1.2
2,293,767	-				-1.5
2,293,830	+				-1.4
2,293,830	+				+0.1
2,293,830	+				-0.0
2,293,830	+				+0.2
2,293,831	-				-2.3
2,293,831	-				+0.4
2,293,831	-				-4.0
2,294,036	+				-0.6
2,294,038	+				+0.2
2,294,039	-				-1.0
2,294,069	-		PP_2020	0.18	-0.3
2,294,069	-		PP_2020	0.18	-1.9
2,294,069	-		PP_2020	0.18	+0.3
2,294,069	-		PP_2020	0.18	-0.3
2,294,069	-		PP_2020	0.18	-0.6
2,294,104	+		PP_2020	0.28	+0.0
2,294,105	-		PP_2020	0.28	-0.5
2,294,290	+		PP_2020	0.80	-0.1
2,294,290	+		PP_2020	0.80	-2.1
2,294,291	-		PP_2020	0.81	+0.9
2,294,291	-		PP_2020	0.81	+0.2
2,294,291	-		PP_2020	0.81	+0.5
2,294,291	-		PP_2020	0.81	+0.4
2,294,291	-		PP_2020	0.81	+0.9
2,294,291	-		PP_2020	0.81	+0.2
2,294,412	+				-0.3
2,294,413	-				-2.3
2,294,435	+				-0.3
2,294,435	+				-0.6
2,294,439	+		PP_2021	0.10	-0.0
2,294,439	+		PP_2021	0.10	-0.5
2,294,439	+		PP_2021	0.10	+2.0
2,294,439	+		PP_2021	0.10	-0.3
2,294,439	+		PP_2021	0.10	-1.3
2,294,439	+		PP_2021	0.10	-0.8
2,294,439	+		PP_2021	0.10	-1.3
2,294,440	-		PP_2021	0.10	-0.6
2,294,440	-		PP_2021	0.10	+0.5
2,294,440	-		PP_2021	0.10	+0.6
2,294,440	-		PP_2021	0.10	+0.5
2,294,440	-		PP_2021	0.10	+0.5
2,294,685	+		PP_2021	0.32	-3.1
2,294,685	+		PP_2021	0.32	-1.8
2,294,704	-		PP_2021	0.34	+0.9
2,294,704	-		PP_2021	0.34	-0.4
2,294,796	-		PP_2021	0.42	-1.8
2,294,877	+		PP_2021	0.49	+0.4
2,294,878	-		PP_2021	0.49	-0.7
2,294,913	+		PP_2021	0.52	-0.6
2,294,913	+		PP_2021	0.52	+0.0
2,294,914	-		PP_2021	0.52	-0.3
2,294,914	-		PP_2021	0.52	-1.7