Strain Fitness in Pseudomonas putida KT2440 around PP_1323

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
1,507,701	+		PP_1321	0.22	-1.1
1,507,702	-		PP_1321	0.22	+0.7
1,507,702	-		PP_1321	0.22	-0.7
1,507,702	-		PP_1321	0.22	-2.7
1,507,702	-		PP_1321	0.22	-2.8
1,507,702	-		PP_1321	0.22	-1.0
1,507,776	+		PP_1321	0.38	-1.0
1,507,776	+		PP_1321	0.38	-1.6
1,507,776	+		PP_1321	0.38	+0.0
1,507,777	-		PP_1321	0.38	+0.8
1,507,777	-		PP_1321	0.38	-1.3
1,507,894	+		PP_1321	0.64	+0.6
1,507,894	+		PP_1321	0.64	+0.1
1,507,894	+		PP_1321	0.64	-3.1
1,507,895	-		PP_1321	0.64	+1.3
1,507,895	-		PP_1321	0.64	-2.4
1,507,895	-		PP_1321	0.64	-0.2
1,507,895	-		PP_1321	0.64	-0.2
1,507,895	-		PP_1321	0.64	-2.4
1,507,918	-		PP_1321	0.69	-0.3
1,508,059	+				+1.4
1,508,060	-				+0.7
1,508,133	+				+1.3
1,508,475	+		PP_1322	0.61	-1.1
1,508,476	-		PP_1322	0.61	-0.9
1,508,692	+				-0.3
1,509,303	-				+1.1
1,509,303	-				-1.0
1,509,303	-				+0.7
1,509,303	-				+0.3
1,509,351	-				-0.6
1,509,351	-				+0.7
1,509,355	-				-0.6
1,509,355	-				-0.1
1,509,355	-				+0.6
1,509,355	-				-0.6
1,509,355	-				+0.2
1,509,355	-				-0.4
1,509,467	-		PP_1324	0.24	-1.3
1,509,543	-		PP_1324	0.44	-0.7
1,509,598	-		PP_1324	0.59	-0.1
1,509,601	-		PP_1324	0.59	-1.6
1,509,601	-		PP_1324	0.59	-1.0
1,509,606	-		PP_1324	0.61	+0.4
1,509,692	-		PP_1324	0.84	+0.2
1,509,915	+				-3.9
1,509,916	-				-1.3
1,509,916	-				-1.2
1,509,936	+		PP_1325	0.10	+0.6
1,509,937	-		PP_1325	0.10	+0.0
1,509,937	-		PP_1325	0.10	-0.6
1,509,937	-		PP_1325	0.10	-1.2
1,509,977	+		PP_1325	0.13	-2.3
1,509,977	+		PP_1325	0.13	-1.6
1,509,978	-		PP_1325	0.13	-1.2
1,509,978	-		PP_1325	0.13	-0.7
1,509,978	-		PP_1325	0.13	+0.6
1,509,978	-		PP_1325	0.13	-1.3
1,509,978	-		PP_1325	0.13	-2.8
1,510,056	+		PP_1325	0.17	+1.2
1,510,083	+		PP_1325	0.18	+0.3
1,510,084	-		PP_1325	0.18	-1.3
1,510,084	-		PP_1325	0.18	+0.9
1,510,101	+		PP_1325	0.19	-1.4