Experiment: Tetrahymena sp., Mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0831 and PP_t68 are separated by 330 nucleotides PP_t68 and PP_0832 are separated by 105 nucleotides PP_0832 and PP_0833 are separated by 14 nucleotides
PP_0831: PP_0831 - hypothetical protein, at 967,989 to 968,567
_0831
PP_t68: PP_t68 - tRNA-Leu, at 968,898 to 968,982
_t68
PP_0832: PP_0832 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 969,088 to 970,137
_0832
PP_0833: PP_0833 - queuine tRNA-ribosyltransferase, at 970,152 to 971,267
_0833
Position (kb) 969
970
971 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 968.120 kb on + strand, within PP_0831 at 968.121 kb on - strand, within PP_0831 at 968.270 kb on - strand, within PP_0831 at 968.288 kb on + strand, within PP_0831 at 968.389 kb on + strand, within PP_0831 at 968.389 kb on + strand, within PP_0831 at 968.389 kb on + strand, within PP_0831 at 968.389 kb on + strand, within PP_0831 at 968.436 kb on + strand, within PP_0831 at 968.436 kb on + strand, within PP_0831 at 968.436 kb on + strand, within PP_0831 at 968.437 kb on - strand, within PP_0831 at 968.581 kb on + strand at 968.582 kb on - strand at 968.599 kb on + strand at 968.599 kb on + strand at 968.600 kb on - strand at 968.764 kb on + strand at 968.791 kb on - strand at 968.791 kb on - strand at 968.802 kb on - strand at 968.802 kb on - strand at 968.876 kb on + strand at 968.877 kb on - strand at 968.877 kb on - strand at 969.055 kb on - strand at 969.232 kb on + strand, within PP_0832 at 969.232 kb on + strand, within PP_0832 at 969.233 kb on - strand, within PP_0832 at 969.395 kb on + strand, within PP_0832 at 969.396 kb on - strand, within PP_0832 at 969.529 kb on + strand, within PP_0832 at 969.529 kb on + strand, within PP_0832 at 969.529 kb on + strand, within PP_0832 at 969.531 kb on + strand, within PP_0832 at 969.532 kb on - strand, within PP_0832 at 969.569 kb on - strand, within PP_0832 at 969.753 kb on + strand, within PP_0832 at 970.037 kb on - strand at 970.076 kb on - strand at 970.254 kb on + strand at 970.254 kb on + strand at 970.254 kb on + strand at 970.255 kb on - strand at 970.255 kb on - strand at 970.255 kb on - strand at 970.435 kb on + strand, within PP_0833 at 970.567 kb on + strand, within PP_0833 at 970.716 kb on + strand, within PP_0833 at 970.955 kb on + strand, within PP_0833 at 970.985 kb on + strand, within PP_0833 at 971.060 kb on + strand, within PP_0833 at 971.085 kb on + strand, within PP_0833 at 971.135 kb on + strand, within PP_0833
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1 remove 968,120 + PP_0831 0.23 -0.7 968,121 - PP_0831 0.23 -0.1 968,270 - PP_0831 0.49 +0.3 968,288 + PP_0831 0.52 -0.1 968,389 + PP_0831 0.69 -0.1 968,389 + PP_0831 0.69 +0.6 968,389 + PP_0831 0.69 +0.2 968,389 + PP_0831 0.69 +1.3 968,436 + PP_0831 0.77 -2.3 968,436 + PP_0831 0.77 +1.8 968,436 + PP_0831 0.77 +1.5 968,437 - PP_0831 0.77 +0.9 968,581 + +1.0 968,582 - +0.4 968,599 + +0.5 968,599 + +1.9 968,600 - -1.9 968,764 + +1.1 968,791 - -2.0 968,791 - +0.4 968,802 - +0.3 968,802 - +0.6 968,876 + -1.4 968,877 - +0.2 968,877 - -1.2 969,055 - -1.9 969,232 + PP_0832 0.14 -0.3 969,232 + PP_0832 0.14 -1.7 969,233 - PP_0832 0.14 -1.7 969,395 + PP_0832 0.29 -1.6 969,396 - PP_0832 0.29 -0.5 969,529 + PP_0832 0.42 -0.4 969,529 + PP_0832 0.42 -0.8 969,529 + PP_0832 0.42 -2.2 969,531 + PP_0832 0.42 -3.3 969,532 - PP_0832 0.42 -0.9 969,569 - PP_0832 0.46 -0.9 969,753 + PP_0832 0.63 +0.3 970,037 - -1.4 970,076 - -1.4 970,254 + -1.1 970,254 + -0.6 970,254 + -0.5 970,255 - -2.5 970,255 - -2.4 970,255 - -2.3 970,435 + PP_0833 0.25 -1.8 970,567 + PP_0833 0.37 -0.7 970,716 + PP_0833 0.51 -1.7 970,955 + PP_0833 0.72 -1.8 970,985 + PP_0833 0.75 -1.8 971,060 + PP_0833 0.81 -1.9 971,085 + PP_0833 0.84 -1.1 971,135 + PP_0833 0.88 -1.9
Or see this region's nucleotide sequence