Strain Fitness in Pseudomonas putida KT2440 around PP_0765

Experiment: Tetrahymena sp., Mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0763 and PP_0765 are separated by 331 nucleotidesPP_0765 and PP_0766 are separated by 25 nucleotides PP_0763: PP_0763 - Medium-chain-fatty-acid CoA ligase, at 878,472 to 880,154 _0763 PP_0765: PP_0765 - putative adhesin (DUF1302) (from data), at 880,486 to 882,372 _0765 PP_0766: PP_0766 - adhesin-associated sorting protein (DUF1329) (from data), at 882,398 to 883,762 _0766 Position (kb) 880 881 882 883Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 879.552 kb on + strand, within PP_0763at 879.552 kb on + strand, within PP_0763at 879.552 kb on + strand, within PP_0763at 879.553 kb on - strand, within PP_0763at 879.553 kb on - strand, within PP_0763at 879.553 kb on - strand, within PP_0763at 879.553 kb on - strand, within PP_0763at 879.557 kb on + strandat 879.558 kb on - strand, within PP_0763at 879.558 kb on - strand, within PP_0763at 879.558 kb on - strand, within PP_0763at 879.656 kb on - strand, within PP_0763at 879.684 kb on + strand, within PP_0763at 879.684 kb on + strand, within PP_0763at 879.685 kb on - strand, within PP_0763at 879.771 kb on + strand, within PP_0763at 879.771 kb on + strand, within PP_0763at 879.957 kb on - strand, within PP_0763at 880.010 kb on + strandat 880.011 kb on - strandat 880.011 kb on - strandat 880.011 kb on - strandat 880.049 kb on + strandat 880.152 kb on + strandat 880.247 kb on + strandat 880.339 kb on + strandat 880.340 kb on - strandat 880.340 kb on - strandat 880.341 kb on + strandat 880.342 kb on - strandat 880.342 kb on - strandat 880.458 kb on + strandat 880.469 kb on + strandat 880.478 kb on + strandat 880.765 kb on - strand, within PP_0765at 880.765 kb on - strand, within PP_0765at 880.765 kb on - strand, within PP_0765at 880.765 kb on - strand, within PP_0765at 880.787 kb on - strand, within PP_0765at 880.787 kb on - strand, within PP_0765at 880.819 kb on + strand, within PP_0765at 880.820 kb on - strand, within PP_0765at 880.820 kb on - strand, within PP_0765at 880.825 kb on + strand, within PP_0765at 880.826 kb on - strand, within PP_0765at 880.826 kb on - strand, within PP_0765at 880.826 kb on - strand, within PP_0765at 880.934 kb on - strand, within PP_0765at 880.942 kb on + strand, within PP_0765at 880.942 kb on + strand, within PP_0765at 880.942 kb on + strand, within PP_0765at 880.942 kb on + strand, within PP_0765at 880.942 kb on + strand, within PP_0765at 880.943 kb on - strand, within PP_0765at 880.943 kb on - strand, within PP_0765at 880.943 kb on - strand, within PP_0765at 880.988 kb on + strand, within PP_0765at 880.989 kb on - strand, within PP_0765at 881.007 kb on + strand, within PP_0765at 881.008 kb on - strand, within PP_0765at 881.008 kb on - strand, within PP_0765at 881.113 kb on + strand, within PP_0765at 881.114 kb on - strand, within PP_0765at 881.114 kb on - strand, within PP_0765at 881.159 kb on - strand, within PP_0765at 881.238 kb on + strand, within PP_0765at 881.262 kb on + strand, within PP_0765at 881.262 kb on + strand, within PP_0765at 881.263 kb on - strand, within PP_0765at 881.263 kb on - strand, within PP_0765at 881.401 kb on + strand, within PP_0765at 881.401 kb on + strand, within PP_0765at 881.401 kb on + strand, within PP_0765at 881.401 kb on + strandat 881.402 kb on - strand, within PP_0765at 881.402 kb on - strand, within PP_0765at 881.402 kb on - strand, within PP_0765at 881.403 kb on + strand, within PP_0765at 881.403 kb on + strand, within PP_0765at 881.403 kb on + strand, within PP_0765at 881.403 kb on + strand, within PP_0765at 881.403 kb on + strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.438 kb on - strand, within PP_0765at 881.449 kb on + strand, within PP_0765at 881.449 kb on + strand, within PP_0765at 881.449 kb on + strand, within PP_0765at 881.449 kb on + strand, within PP_0765at 881.449 kb on + strand, within PP_0765at 881.450 kb on - strand, within PP_0765at 881.450 kb on - strand, within PP_0765at 881.450 kb on - strand, within PP_0765at 881.562 kb on + strand, within PP_0765at 881.563 kb on - strand, within PP_0765at 881.572 kb on + strand, within PP_0765at 881.584 kb on + strand, within PP_0765at 881.605 kb on + strand, within PP_0765at 881.606 kb on - strand, within PP_0765at 881.694 kb on + strand, within PP_0765at 881.695 kb on - strand, within PP_0765at 881.695 kb on - strand, within PP_0765at 881.874 kb on - strand, within PP_0765at 881.874 kb on - strand, within PP_0765at 881.874 kb on - strand, within PP_0765at 881.874 kb on - strand, within PP_0765at 882.079 kb on + strand, within PP_0765at 882.080 kb on - strand, within PP_0765at 882.080 kb on - strand, within PP_0765at 882.128 kb on - strand, within PP_0765at 882.147 kb on + strand, within PP_0765at 882.274 kb on + strandat 882.274 kb on + strandat 882.274 kb on + strandat 882.274 kb on + strandat 882.275 kb on - strandat 882.275 kb on - strandat 882.275 kb on - strandat 882.276 kb on + strandat 882.293 kb on - strandat 882.316 kb on + strandat 882.316 kb on + strandat 882.317 kb on - strandat 882.317 kb on - strandat 882.370 kb on + strandat 882.370 kb on + strandat 882.371 kb on - strandat 882.371 kb on - strandat 882.371 kb on - strandat 882.376 kb on + strandat 882.376 kb on + strandat 882.376 kb on + strandat 882.376 kb on + strandat 882.376 kb on + strandat 882.377 kb on - strandat 882.675 kb on - strand, within PP_0766at 882.675 kb on - strand, within PP_0766at 882.675 kb on - strand, within PP_0766at 882.732 kb on - strand, within PP_0766at 882.732 kb on - strand, within PP_0766at 882.818 kb on - strand, within PP_0766at 882.990 kb on + strand, within PP_0766at 882.990 kb on + strand, within PP_0766at 882.991 kb on - strand, within PP_0766at 882.991 kb on - strand, within PP_0766at 882.992 kb on + strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 883.035 kb on - strand, within PP_0766at 883.035 kb on - strand, within PP_0766at 883.067 kb on + strand, within PP_0766at 883.068 kb on - strand, within PP_0766at 883.068 kb on - strand, within PP_0766at 883.068 kb on - strand, within PP_0766at 883.068 kb on - strand, within PP_0766at 883.084 kb on + strand, within PP_0766at 883.169 kb on + strand, within PP_0766at 883.169 kb on + strand, within PP_0766at 883.170 kb on - strand, within PP_0766at 883.215 kb on - strand, within PP_0766at 883.249 kb on + strand, within PP_0766at 883.249 kb on + strand, within PP_0766at 883.250 kb on - strand, within PP_0766at 883.325 kb on + strand, within PP_0766at 883.325 kb on + strand, within PP_0766at 883.325 kb on + strand, within PP_0766at 883.326 kb on - strand, within PP_0766at 883.326 kb on - strand, within PP_0766at 883.326 kb on - strand, within PP_0766at 883.370 kb on + strand, within PP_0766at 883.371 kb on - strand, within PP_0766

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1
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879,552 + PP_0763 0.64 -0.0
879,552 + PP_0763 0.64 -1.5
879,552 + PP_0763 0.64 +1.1
879,553 - PP_0763 0.64 -1.0
879,553 - PP_0763 0.64 -0.3
879,553 - PP_0763 0.64 -2.3
879,553 - PP_0763 0.64 -0.2
879,557 + +0.6
879,558 - PP_0763 0.65 +2.1
879,558 - PP_0763 0.65 +0.2
879,558 - PP_0763 0.65 -0.2
879,656 - PP_0763 0.70 -0.6
879,684 + PP_0763 0.72 -1.0
879,684 + PP_0763 0.72 +0.4
879,685 - PP_0763 0.72 -1.0
879,771 + PP_0763 0.77 -3.5
879,771 + PP_0763 0.77 +0.7
879,957 - PP_0763 0.88 -0.2
880,010 + +0.9
880,011 - -0.4
880,011 - +1.0
880,011 - -1.0
880,049 + -0.5
880,152 + -0.1
880,247 + -0.1
880,339 + +0.2
880,340 - -1.6
880,340 - +0.1
880,341 + +0.2
880,342 - -3.1
880,342 - -2.6
880,458 + +1.9
880,469 + -1.3
880,478 + -1.6
880,765 - PP_0765 0.15 -4.0
880,765 - PP_0765 0.15 -0.7
880,765 - PP_0765 0.15 -2.5
880,765 - PP_0765 0.15 -2.7
880,787 - PP_0765 0.16 -2.6
880,787 - PP_0765 0.16 +0.5
880,819 + PP_0765 0.18 -4.2
880,820 - PP_0765 0.18 -1.8
880,820 - PP_0765 0.18 -0.8
880,825 + PP_0765 0.18 -2.1
880,826 - PP_0765 0.18 -1.8
880,826 - PP_0765 0.18 -1.5
880,826 - PP_0765 0.18 +0.1
880,934 - PP_0765 0.24 -2.0
880,942 + PP_0765 0.24 -1.1
880,942 + PP_0765 0.24 -0.8
880,942 + PP_0765 0.24 -0.6
880,942 + PP_0765 0.24 -0.4
880,942 + PP_0765 0.24 +0.3
880,943 - PP_0765 0.24 -1.3
880,943 - PP_0765 0.24 -0.4
880,943 - PP_0765 0.24 -2.5
880,988 + PP_0765 0.27 -2.5
880,989 - PP_0765 0.27 -0.3
881,007 + PP_0765 0.28 -1.9
881,008 - PP_0765 0.28 -3.1
881,008 - PP_0765 0.28 -0.5
881,113 + PP_0765 0.33 -1.2
881,114 - PP_0765 0.33 -0.0
881,114 - PP_0765 0.33 +0.2
881,159 - PP_0765 0.36 +0.1
881,238 + PP_0765 0.40 -2.3
881,262 + PP_0765 0.41 -3.0
881,262 + PP_0765 0.41 -0.1
881,263 - PP_0765 0.41 -0.9
881,263 - PP_0765 0.41 -2.0
881,401 + PP_0765 0.48 +0.2
881,401 + PP_0765 0.48 -1.4
881,401 + PP_0765 0.48 +0.2
881,401 + -0.4
881,402 - PP_0765 0.49 -3.3
881,402 - PP_0765 0.49 -2.4
881,402 - PP_0765 0.49 +0.0
881,403 + PP_0765 0.49 -0.2
881,403 + PP_0765 0.49 -1.1
881,403 + PP_0765 0.49 -1.3
881,403 + PP_0765 0.49 -3.5
881,403 + PP_0765 0.49 -2.7
881,404 - PP_0765 0.49 -1.6
881,404 - PP_0765 0.49 -1.2
881,404 - PP_0765 0.49 -0.3
881,404 - PP_0765 0.49 -4.5
881,404 - PP_0765 0.49 +0.1
881,404 - PP_0765 0.49 +0.5
881,404 - PP_0765 0.49 -1.6
881,404 - PP_0765 0.49 -0.9
881,438 - PP_0765 0.50 -1.8
881,449 + PP_0765 0.51 -0.6
881,449 + PP_0765 0.51 -3.4
881,449 + PP_0765 0.51 -1.7
881,449 + PP_0765 0.51 -1.0
881,449 + PP_0765 0.51 -0.1
881,450 - PP_0765 0.51 -3.8
881,450 - PP_0765 0.51 +1.0
881,450 - PP_0765 0.51 +0.2
881,562 + PP_0765 0.57 -3.1
881,563 - PP_0765 0.57 -1.7
881,572 + PP_0765 0.58 -1.8
881,584 + PP_0765 0.58 -0.9
881,605 + PP_0765 0.59 -1.2
881,606 - PP_0765 0.59 -2.8
881,694 + PP_0765 0.64 -1.3
881,695 - PP_0765 0.64 -0.0
881,695 - PP_0765 0.64 -0.3
881,874 - PP_0765 0.74 -0.7
881,874 - PP_0765 0.74 -4.1
881,874 - PP_0765 0.74 -0.7
881,874 - PP_0765 0.74 -2.6
882,079 + PP_0765 0.84 -1.2
882,080 - PP_0765 0.84 -0.6
882,080 - PP_0765 0.84 -1.0
882,128 - PP_0765 0.87 -0.8
882,147 + PP_0765 0.88 -0.9
882,274 + -1.9
882,274 + -2.1
882,274 + -0.3
882,274 + -3.0
882,275 - -3.8
882,275 - -2.0
882,275 - -0.6
882,276 + +0.2
882,293 - -2.3
882,316 + -3.2
882,316 + +0.1
882,317 - -0.4
882,317 - -3.3
882,370 + -1.4
882,370 + +1.2
882,371 - -1.8
882,371 - -0.5
882,371 - -1.0
882,376 + -0.7
882,376 + +0.3
882,376 + +1.3
882,376 + +0.7
882,376 + -0.0
882,377 - -0.1
882,675 - PP_0766 0.20 -0.4
882,675 - PP_0766 0.20 -1.4
882,675 - PP_0766 0.20 -1.4
882,732 - PP_0766 0.24 +0.9
882,732 - PP_0766 0.24 +0.5
882,818 - PP_0766 0.31 -0.7
882,990 + PP_0766 0.43 -0.3
882,990 + PP_0766 0.43 -0.7
882,991 - PP_0766 0.43 +0.8
882,991 - PP_0766 0.43 -3.7
882,992 + PP_0766 0.44 -2.1
882,993 - PP_0766 0.44 -3.3
882,993 - PP_0766 0.44 -0.5
882,993 - PP_0766 0.44 +0.2
882,993 - PP_0766 0.44 -0.7
882,993 - PP_0766 0.44 -2.3
882,993 - PP_0766 0.44 +0.1
883,035 - PP_0766 0.47 -2.5
883,035 - PP_0766 0.47 -0.7
883,067 + PP_0766 0.49 -2.0
883,068 - PP_0766 0.49 +0.0
883,068 - PP_0766 0.49 -0.5
883,068 - PP_0766 0.49 -0.5
883,068 - PP_0766 0.49 -0.2
883,084 + PP_0766 0.50 -3.2
883,169 + PP_0766 0.56 -0.4
883,169 + PP_0766 0.56 -1.5
883,170 - PP_0766 0.57 -4.0
883,215 - PP_0766 0.60 -0.3
883,249 + PP_0766 0.62 -1.1
883,249 + PP_0766 0.62 -1.2
883,250 - PP_0766 0.62 -0.0
883,325 + PP_0766 0.68 -2.7
883,325 + PP_0766 0.68 +0.3
883,325 + PP_0766 0.68 -1.2
883,326 - PP_0766 0.68 -3.7
883,326 - PP_0766 0.68 -3.5
883,326 - PP_0766 0.68 -2.6
883,370 + PP_0766 0.71 +1.2
883,371 - PP_0766 0.71 +1.2

Or see this region's nucleotide sequence