Strain Fitness in Pseudomonas putida KT2440 around PP_0713

Experiment: Tetrahymena sp., Mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0711 and PP_0712 are separated by 106 nucleotidesPP_0712 and PP_0713 are separated by 36 nucleotidesPP_0713 and PP_0714 are separated by 40 nucleotides PP_0711: PP_0711 - putative hydrolase, at 826,810 to 827,430 _0711 PP_0712: PP_0712 - polyphosphate kinase 2, at 827,537 to 828,352 _0712 PP_0713: PP_0713 - Kef-type potassium/proton antiporter, CPA2 family, at 828,389 to 829,585 _0713 PP_0714: PP_0714 - Transporter, PerM family, at 829,626 to 830,723 _0714 Position (kb) 828 829 830Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 827.410 kb on + strandat 827.410 kb on + strandat 827.428 kb on + strandat 827.429 kb on - strandat 827.495 kb on - strandat 827.495 kb on - strandat 827.504 kb on + strandat 827.504 kb on + strandat 827.504 kb on + strandat 827.504 kb on + strandat 827.518 kb on + strandat 827.625 kb on + strand, within PP_0712at 827.625 kb on + strand, within PP_0712at 827.625 kb on + strand, within PP_0712at 827.625 kb on + strand, within PP_0712at 827.625 kb on + strand, within PP_0712at 827.625 kb on + strand, within PP_0712at 827.626 kb on - strand, within PP_0712at 827.626 kb on - strand, within PP_0712at 827.626 kb on - strand, within PP_0712at 827.640 kb on + strand, within PP_0712at 827.640 kb on + strand, within PP_0712at 827.641 kb on - strand, within PP_0712at 827.673 kb on + strand, within PP_0712at 827.673 kb on + strand, within PP_0712at 827.673 kb on + strand, within PP_0712at 827.674 kb on - strand, within PP_0712at 827.674 kb on - strand, within PP_0712at 827.674 kb on - strand, within PP_0712at 827.763 kb on + strand, within PP_0712at 827.764 kb on - strand, within PP_0712at 827.807 kb on + strand, within PP_0712at 827.807 kb on + strand, within PP_0712at 827.807 kb on + strand, within PP_0712at 827.808 kb on - strand, within PP_0712at 827.808 kb on - strand, within PP_0712at 827.808 kb on - strand, within PP_0712at 827.808 kb on - strandat 827.873 kb on + strand, within PP_0712at 827.874 kb on - strand, within PP_0712at 827.996 kb on + strand, within PP_0712at 827.996 kb on + strand, within PP_0712at 827.996 kb on + strand, within PP_0712at 828.098 kb on + strand, within PP_0712at 828.098 kb on + strand, within PP_0712at 828.116 kb on + strand, within PP_0712at 828.117 kb on - strand, within PP_0712at 828.117 kb on - strand, within PP_0712at 828.117 kb on - strand, within PP_0712at 828.214 kb on + strand, within PP_0712at 828.215 kb on - strand, within PP_0712at 828.238 kb on + strand, within PP_0712at 828.239 kb on - strand, within PP_0712at 828.245 kb on + strand, within PP_0712at 828.246 kb on - strand, within PP_0712at 828.256 kb on - strand, within PP_0712at 828.256 kb on - strand, within PP_0712at 828.305 kb on + strandat 828.305 kb on + strandat 828.305 kb on + strandat 828.305 kb on + strandat 828.380 kb on + strandat 828.380 kb on + strandat 828.380 kb on + strandat 828.426 kb on + strandat 828.426 kb on + strandat 828.445 kb on - strandat 828.445 kb on - strandat 828.486 kb on + strandat 828.486 kb on + strandat 828.495 kb on - strandat 828.652 kb on - strand, within PP_0713at 828.795 kb on + strand, within PP_0713at 828.796 kb on - strand, within PP_0713at 828.992 kb on + strand, within PP_0713at 828.992 kb on + strand, within PP_0713at 829.008 kb on + strand, within PP_0713at 829.008 kb on + strand, within PP_0713at 829.230 kb on + strand, within PP_0713at 829.231 kb on - strand, within PP_0713at 829.231 kb on - strand, within PP_0713at 829.231 kb on - strand, within PP_0713at 829.234 kb on + strand, within PP_0713at 829.234 kb on + strand, within PP_0713at 829.234 kb on + strand, within PP_0713at 829.235 kb on - strand, within PP_0713at 829.235 kb on - strand, within PP_0713at 829.325 kb on + strand, within PP_0713at 829.326 kb on - strand, within PP_0713at 829.326 kb on - strand, within PP_0713at 829.326 kb on - strand, within PP_0713at 829.461 kb on + strand, within PP_0713at 829.461 kb on + strand, within PP_0713at 829.462 kb on - strand, within PP_0713at 829.786 kb on - strand, within PP_0714at 829.883 kb on + strand, within PP_0714at 829.883 kb on + strand, within PP_0714at 829.883 kb on + strand, within PP_0714at 829.884 kb on - strand, within PP_0714at 829.884 kb on - strand, within PP_0714at 829.887 kb on + strand, within PP_0714at 829.887 kb on + strand, within PP_0714at 829.887 kb on + strand, within PP_0714at 829.888 kb on - strand, within PP_0714at 829.888 kb on - strand, within PP_0714at 829.888 kb on - strand, within PP_0714at 830.054 kb on - strand, within PP_0714at 830.054 kb on - strand, within PP_0714at 830.347 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.445 kb on + strand, within PP_0714at 830.446 kb on - strand, within PP_0714at 830.446 kb on - strand, within PP_0714at 830.446 kb on - strand, within PP_0714at 830.496 kb on + strand, within PP_0714at 830.496 kb on + strand, within PP_0714at 830.497 kb on - strand, within PP_0714at 830.497 kb on - strand, within PP_0714at 830.564 kb on - strand, within PP_0714at 830.564 kb on - strand, within PP_0714at 830.578 kb on + strand, within PP_0714

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1
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827,410 + +0.4
827,410 + +0.4
827,428 + +1.5
827,429 - +1.1
827,495 - -1.1
827,495 - +0.5
827,504 + +0.3
827,504 + +0.5
827,504 + +1.2
827,504 + -0.5
827,518 + -0.4
827,625 + PP_0712 0.11 -0.6
827,625 + PP_0712 0.11 -1.8
827,625 + PP_0712 0.11 -0.0
827,625 + PP_0712 0.11 +0.1
827,625 + PP_0712 0.11 -1.5
827,625 + PP_0712 0.11 -0.9
827,626 - PP_0712 0.11 +0.2
827,626 - PP_0712 0.11 -0.1
827,626 - PP_0712 0.11 +0.1
827,640 + PP_0712 0.13 -0.7
827,640 + PP_0712 0.13 -2.0
827,641 - PP_0712 0.13 -1.4
827,673 + PP_0712 0.17 +1.0
827,673 + PP_0712 0.17 +0.0
827,673 + PP_0712 0.17 +0.5
827,674 - PP_0712 0.17 +0.5
827,674 - PP_0712 0.17 +1.1
827,674 - PP_0712 0.17 +0.2
827,763 + PP_0712 0.28 -0.0
827,764 - PP_0712 0.28 -0.4
827,807 + PP_0712 0.33 -0.4
827,807 + PP_0712 0.33 +0.6
827,807 + PP_0712 0.33 +0.2
827,808 - PP_0712 0.33 -3.8
827,808 - PP_0712 0.33 -0.4
827,808 - PP_0712 0.33 +0.9
827,808 - -0.3
827,873 + PP_0712 0.41 +1.7
827,874 - PP_0712 0.41 -0.5
827,996 + PP_0712 0.56 +0.2
827,996 + PP_0712 0.56 -0.3
827,996 + PP_0712 0.56 -0.6
828,098 + PP_0712 0.69 +0.7
828,098 + PP_0712 0.69 +1.4
828,116 + PP_0712 0.71 -0.8
828,117 - PP_0712 0.71 +0.5
828,117 - PP_0712 0.71 +0.9
828,117 - PP_0712 0.71 -0.1
828,214 + PP_0712 0.83 +0.7
828,215 - PP_0712 0.83 -1.6
828,238 + PP_0712 0.86 -1.1
828,239 - PP_0712 0.86 +0.9
828,245 + PP_0712 0.87 -0.4
828,246 - PP_0712 0.87 +0.8
828,256 - PP_0712 0.88 -0.6
828,256 - PP_0712 0.88 +0.8
828,305 + -2.0
828,305 + +1.2
828,305 + -0.4
828,305 + -0.1
828,380 + +0.2
828,380 + -2.2
828,380 + -0.3
828,426 + -0.3
828,426 + -0.5
828,445 - -1.8
828,445 - -1.3
828,486 + -2.3
828,486 + -0.1
828,495 - -0.3
828,652 - PP_0713 0.22 -1.4
828,795 + PP_0713 0.34 -2.4
828,796 - PP_0713 0.34 +0.1
828,992 + PP_0713 0.50 -0.1
828,992 + PP_0713 0.50 +0.5
829,008 + PP_0713 0.52 -0.7
829,008 + PP_0713 0.52 -0.8
829,230 + PP_0713 0.70 +0.3
829,231 - PP_0713 0.70 -0.0
829,231 - PP_0713 0.70 +0.2
829,231 - PP_0713 0.70 -0.1
829,234 + PP_0713 0.71 -0.6
829,234 + PP_0713 0.71 -0.5
829,234 + PP_0713 0.71 +0.4
829,235 - PP_0713 0.71 +1.2
829,235 - PP_0713 0.71 -0.9
829,325 + PP_0713 0.78 -1.8
829,326 - PP_0713 0.78 +1.1
829,326 - PP_0713 0.78 -0.6
829,326 - PP_0713 0.78 -0.2
829,461 + PP_0713 0.90 -0.2
829,461 + PP_0713 0.90 +0.5
829,462 - PP_0713 0.90 -1.2
829,786 - PP_0714 0.15 -0.4
829,883 + PP_0714 0.23 -1.4
829,883 + PP_0714 0.23 -0.5
829,883 + PP_0714 0.23 -1.0
829,884 - PP_0714 0.23 +0.6
829,884 - PP_0714 0.23 -0.8
829,887 + PP_0714 0.24 +0.3
829,887 + PP_0714 0.24 +0.2
829,887 + PP_0714 0.24 +0.2
829,888 - PP_0714 0.24 +0.5
829,888 - PP_0714 0.24 +0.5
829,888 - PP_0714 0.24 -1.9
830,054 - PP_0714 0.39 -0.1
830,054 - PP_0714 0.39 -0.2
830,347 + PP_0714 0.66 +0.2
830,445 + PP_0714 0.75 -1.5
830,445 + PP_0714 0.75 -1.6
830,445 + PP_0714 0.75 +0.8
830,445 + PP_0714 0.75 -0.4
830,445 + PP_0714 0.75 -0.6
830,445 + PP_0714 0.75 -0.2
830,445 + PP_0714 0.75 +1.2
830,445 + PP_0714 0.75 +0.2
830,445 + PP_0714 0.75 -0.1
830,445 + PP_0714 0.75 +0.7
830,446 - PP_0714 0.75 -1.0
830,446 - PP_0714 0.75 +1.0
830,446 - PP_0714 0.75 +0.1
830,496 + PP_0714 0.79 -0.8
830,496 + PP_0714 0.79 -0.5
830,497 - PP_0714 0.79 +1.4
830,497 - PP_0714 0.79 -1.2
830,564 - PP_0714 0.85 +0.3
830,564 - PP_0714 0.85 +1.2
830,578 + PP_0714 0.87 +0.9

Or see this region's nucleotide sequence