Strain Fitness in Pseudomonas putida KT2440 around PP_0551

Experiment: Tetrahymena sp., Mixed culture-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0549 and PP_0550 are separated by 107 nucleotidesPP_0550 and PP_0551 are separated by 27 nucleotidesPP_0551 and PP_0552 are separated by 18 nucleotides PP_0549: PP_0549 - putative Lipoprotein, at 637,749 to 638,036 _0549 PP_0550: PP_0550 - conserved protein of unknown function, at 638,144 to 638,788 _0550 PP_0551: PP_0551 - MORN domain protein, at 638,816 to 640,744 _0551 PP_0552: PP_0552 - 2,3-butanediol dehydrogenase, at 640,763 to 641,851 _0552 Position (kb) 638 639 640 641Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 637.849 kb on - strand, within PP_0549at 637.872 kb on + strand, within PP_0549at 637.872 kb on + strand, within PP_0549at 637.872 kb on + strand, within PP_0549at 637.872 kb on + strand, within PP_0549at 637.872 kb on + strand, within PP_0549at 637.873 kb on - strand, within PP_0549at 637.873 kb on - strand, within PP_0549at 637.908 kb on + strand, within PP_0549at 638.008 kb on + strandat 638.009 kb on - strandat 638.009 kb on - strandat 638.064 kb on + strandat 638.065 kb on - strandat 638.065 kb on - strandat 638.074 kb on + strandat 638.145 kb on + strandat 638.239 kb on + strand, within PP_0550at 638.295 kb on - strand, within PP_0550at 638.295 kb on - strand, within PP_0550at 638.432 kb on - strand, within PP_0550at 638.619 kb on - strand, within PP_0550at 638.677 kb on + strand, within PP_0550at 638.723 kb on + strand, within PP_0550at 638.724 kb on - strandat 638.784 kb on + strandat 638.784 kb on + strandat 638.784 kb on + strandat 638.784 kb on + strandat 638.785 kb on - strandat 638.785 kb on - strandat 638.785 kb on - strandat 638.806 kb on - strandat 639.069 kb on + strand, within PP_0551at 639.163 kb on + strand, within PP_0551at 639.163 kb on + strand, within PP_0551at 639.164 kb on - strand, within PP_0551at 639.165 kb on + strand, within PP_0551at 639.165 kb on + strand, within PP_0551at 639.166 kb on - strand, within PP_0551at 639.166 kb on - strand, within PP_0551at 639.166 kb on - strand, within PP_0551at 639.166 kb on - strand, within PP_0551at 639.177 kb on + strand, within PP_0551at 639.177 kb on + strand, within PP_0551at 639.178 kb on - strand, within PP_0551at 639.322 kb on - strand, within PP_0551at 639.486 kb on + strand, within PP_0551at 639.486 kb on + strand, within PP_0551at 639.487 kb on - strand, within PP_0551at 639.487 kb on - strand, within PP_0551at 639.487 kb on - strand, within PP_0551at 639.507 kb on - strand, within PP_0551at 639.507 kb on - strand, within PP_0551at 639.543 kb on + strand, within PP_0551at 639.543 kb on + strand, within PP_0551at 639.543 kb on + strand, within PP_0551at 639.543 kb on + strand, within PP_0551at 639.543 kb on + strand, within PP_0551at 639.544 kb on - strand, within PP_0551at 639.544 kb on - strand, within PP_0551at 639.544 kb on - strand, within PP_0551at 639.544 kb on - strand, within PP_0551at 639.573 kb on - strand, within PP_0551at 639.573 kb on - strand, within PP_0551at 639.620 kb on + strand, within PP_0551at 639.620 kb on + strand, within PP_0551at 639.621 kb on - strand, within PP_0551at 639.621 kb on - strand, within PP_0551at 639.735 kb on + strand, within PP_0551at 639.762 kb on + strand, within PP_0551at 639.763 kb on - strand, within PP_0551at 639.763 kb on - strand, within PP_0551at 639.763 kb on - strand, within PP_0551at 639.831 kb on + strand, within PP_0551at 639.831 kb on + strand, within PP_0551at 639.832 kb on - strand, within PP_0551at 639.970 kb on - strand, within PP_0551at 639.970 kb on - strand, within PP_0551at 639.970 kb on - strand, within PP_0551at 639.970 kb on - strand, within PP_0551at 639.993 kb on + strand, within PP_0551at 640.010 kb on + strand, within PP_0551at 640.149 kb on + strand, within PP_0551at 640.149 kb on + strand, within PP_0551at 640.149 kb on + strand, within PP_0551at 640.150 kb on - strand, within PP_0551at 640.176 kb on + strand, within PP_0551at 640.240 kb on + strand, within PP_0551at 640.240 kb on + strand, within PP_0551at 640.242 kb on + strand, within PP_0551at 640.243 kb on - strand, within PP_0551at 640.243 kb on - strand, within PP_0551at 640.309 kb on - strand, within PP_0551at 640.309 kb on - strand, within PP_0551at 640.433 kb on + strand, within PP_0551at 640.434 kb on - strand, within PP_0551at 640.434 kb on - strand, within PP_0551at 640.566 kb on + strandat 640.566 kb on + strandat 640.566 kb on + strandat 640.566 kb on + strandat 640.567 kb on - strandat 640.567 kb on - strandat 640.567 kb on - strandat 640.567 kb on - strandat 640.567 kb on - strandat 640.567 kb on - strandat 640.567 kb on - strandat 640.579 kb on + strandat 640.580 kb on - strandat 640.580 kb on - strandat 640.647 kb on + strandat 640.648 kb on - strandat 640.654 kb on + strandat 640.655 kb on - strandat 640.935 kb on + strandat 640.936 kb on - strand, within PP_0552at 641.011 kb on + strand, within PP_0552at 641.069 kb on - strand, within PP_0552at 641.297 kb on + strand, within PP_0552at 641.297 kb on + strand, within PP_0552at 641.298 kb on - strand, within PP_0552at 641.298 kb on - strand, within PP_0552at 641.407 kb on - strand, within PP_0552at 641.493 kb on + strand, within PP_0552at 641.493 kb on + strand, within PP_0552at 641.493 kb on + strand, within PP_0552at 641.493 kb on + strand, within PP_0552at 641.493 kb on + strand, within PP_0552at 641.494 kb on - strand, within PP_0552at 641.511 kb on + strand, within PP_0552at 641.511 kb on + strand, within PP_0552at 641.511 kb on + strand, within PP_0552at 641.512 kb on - strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.514 kb on + strand, within PP_0552at 641.515 kb on - strand, within PP_0552at 641.515 kb on - strand, within PP_0552at 641.522 kb on - strand, within PP_0552at 641.568 kb on + strand, within PP_0552at 641.666 kb on + strand, within PP_0552at 641.694 kb on + strand, within PP_0552at 641.694 kb on + strand, within PP_0552at 641.694 kb on + strand, within PP_0552at 641.695 kb on - strand, within PP_0552at 641.695 kb on - strand, within PP_0552at 641.695 kb on - strand, within PP_0552at 641.695 kb on - strand, within PP_0552

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1
remove
637,849 - PP_0549 0.35 -1.1
637,872 + PP_0549 0.43 -1.5
637,872 + PP_0549 0.43 +1.3
637,872 + PP_0549 0.43 +1.1
637,872 + PP_0549 0.43 -0.3
637,872 + PP_0549 0.43 +0.2
637,873 - PP_0549 0.43 -0.4
637,873 - PP_0549 0.43 -0.5
637,908 + PP_0549 0.55 -1.5
638,008 + +1.1
638,009 - -0.6
638,009 - +1.1
638,064 + +0.9
638,065 - -0.3
638,065 - -0.2
638,074 + -1.9
638,145 + +1.0
638,239 + PP_0550 0.15 -1.3
638,295 - PP_0550 0.23 +0.4
638,295 - PP_0550 0.23 +0.2
638,432 - PP_0550 0.45 -1.3
638,619 - PP_0550 0.74 +0.5
638,677 + PP_0550 0.83 -3.0
638,723 + PP_0550 0.90 +0.2
638,724 - -0.5
638,784 + -0.0
638,784 + -1.4
638,784 + -0.4
638,784 + -0.3
638,785 - +1.3
638,785 - +0.1
638,785 - +2.0
638,806 - -0.2
639,069 + PP_0551 0.13 -0.5
639,163 + PP_0551 0.18 +0.5
639,163 + PP_0551 0.18 -2.2
639,164 - PP_0551 0.18 +0.5
639,165 + PP_0551 0.18 -1.1
639,165 + PP_0551 0.18 -1.0
639,166 - PP_0551 0.18 -0.9
639,166 - PP_0551 0.18 -1.2
639,166 - PP_0551 0.18 -0.1
639,166 - PP_0551 0.18 -2.9
639,177 + PP_0551 0.19 -0.1
639,177 + PP_0551 0.19 -2.2
639,178 - PP_0551 0.19 -1.3
639,322 - PP_0551 0.26 -0.2
639,486 + PP_0551 0.35 +0.0
639,486 + PP_0551 0.35 +0.6
639,487 - PP_0551 0.35 -1.2
639,487 - PP_0551 0.35 -1.4
639,487 - PP_0551 0.35 -0.1
639,507 - PP_0551 0.36 -1.9
639,507 - PP_0551 0.36 -0.4
639,543 + PP_0551 0.38 +1.7
639,543 + PP_0551 0.38 -0.3
639,543 + PP_0551 0.38 -0.5
639,543 + PP_0551 0.38 +0.4
639,543 + PP_0551 0.38 -0.5
639,544 - PP_0551 0.38 -0.3
639,544 - PP_0551 0.38 -0.3
639,544 - PP_0551 0.38 +0.2
639,544 - PP_0551 0.38 +0.5
639,573 - PP_0551 0.39 -2.3
639,573 - PP_0551 0.39 -0.9
639,620 + PP_0551 0.42 +1.0
639,620 + PP_0551 0.42 +0.4
639,621 - PP_0551 0.42 -0.8
639,621 - PP_0551 0.42 -0.9
639,735 + PP_0551 0.48 +1.7
639,762 + PP_0551 0.49 +0.8
639,763 - PP_0551 0.49 +1.2
639,763 - PP_0551 0.49 -0.6
639,763 - PP_0551 0.49 +0.5
639,831 + PP_0551 0.53 -0.2
639,831 + PP_0551 0.53 +0.2
639,832 - PP_0551 0.53 -0.8
639,970 - PP_0551 0.60 -1.7
639,970 - PP_0551 0.60 -0.6
639,970 - PP_0551 0.60 -1.6
639,970 - PP_0551 0.60 -0.5
639,993 + PP_0551 0.61 -0.6
640,010 + PP_0551 0.62 -1.3
640,149 + PP_0551 0.69 +0.7
640,149 + PP_0551 0.69 -0.9
640,149 + PP_0551 0.69 -1.8
640,150 - PP_0551 0.69 -2.0
640,176 + PP_0551 0.71 +0.6
640,240 + PP_0551 0.74 +0.0
640,240 + PP_0551 0.74 -0.2
640,242 + PP_0551 0.74 +0.8
640,243 - PP_0551 0.74 -2.2
640,243 - PP_0551 0.74 -0.6
640,309 - PP_0551 0.77 -2.1
640,309 - PP_0551 0.77 -0.4
640,433 + PP_0551 0.84 +1.2
640,434 - PP_0551 0.84 -0.5
640,434 - PP_0551 0.84 -2.2
640,566 + -0.3
640,566 + -0.4
640,566 + -0.9
640,566 + +0.5
640,567 - +0.2
640,567 - +0.0
640,567 - -1.2
640,567 - -1.1
640,567 - -0.2
640,567 - -1.2
640,567 - -0.3
640,579 + -1.7
640,580 - +0.8
640,580 - -0.2
640,647 + -0.7
640,648 - +0.1
640,654 + +1.3
640,655 - -0.8
640,935 + -0.3
640,936 - PP_0552 0.16 -0.2
641,011 + PP_0552 0.23 -1.4
641,069 - PP_0552 0.28 -0.2
641,297 + PP_0552 0.49 +0.2
641,297 + PP_0552 0.49 -2.6
641,298 - PP_0552 0.49 -0.0
641,298 - PP_0552 0.49 -0.3
641,407 - PP_0552 0.59 -1.8
641,493 + PP_0552 0.67 -1.6
641,493 + PP_0552 0.67 +0.5
641,493 + PP_0552 0.67 -1.0
641,493 + PP_0552 0.67 +0.8
641,493 + PP_0552 0.67 +0.5
641,494 - PP_0552 0.67 -0.0
641,511 + PP_0552 0.69 -1.7
641,511 + PP_0552 0.69 +1.4
641,511 + PP_0552 0.69 -1.3
641,512 - PP_0552 0.69 -0.4
641,514 + PP_0552 0.69 -1.1
641,514 + PP_0552 0.69 -0.5
641,514 + PP_0552 0.69 +1.9
641,514 + PP_0552 0.69 -0.5
641,514 + PP_0552 0.69 +1.3
641,514 + PP_0552 0.69 -0.7
641,514 + PP_0552 0.69 -2.9
641,515 - PP_0552 0.69 -0.1
641,515 - PP_0552 0.69 +1.3
641,522 - PP_0552 0.70 +0.8
641,568 + PP_0552 0.74 -2.3
641,666 + PP_0552 0.83 -0.0
641,694 + PP_0552 0.85 -0.9
641,694 + PP_0552 0.85 -1.0
641,694 + PP_0552 0.85 +1.2
641,695 - PP_0552 0.86 +0.9
641,695 - PP_0552 0.86 +0.3
641,695 - PP_0552 0.86 +0.2
641,695 - PP_0552 0.86 -0.3

Or see this region's nucleotide sequence