Experiment: Tetrahymena sp., Mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0484 and PP_0485 are separated by 9 nucleotides PP_0485 and PP_0486 are separated by 90 nucleotides
PP_0484: PP_0484 - transporter of an unknown substrate, at 569,625 to 571,019
_0484
PP_0485: PP_0485 - Single-stranded DNA-binding protein, at 571,029 to 571,574
_0485
PP_0486: PP_0486 - Transcriptional regulator, GntR family, at 571,665 to 573,089
_0486
Position (kb) 571
572 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 570.393 kb on + strand, within PP_0484 at 570.394 kb on - strand at 570.394 kb on - strand, within PP_0484 at 570.444 kb on + strand, within PP_0484 at 570.444 kb on + strand, within PP_0484 at 570.444 kb on + strand, within PP_0484 at 570.445 kb on - strand, within PP_0484 at 570.445 kb on - strand, within PP_0484 at 570.445 kb on - strand, within PP_0484 at 570.514 kb on + strand, within PP_0484 at 570.515 kb on - strand, within PP_0484 at 570.516 kb on + strand, within PP_0484 at 570.516 kb on + strand, within PP_0484 at 570.516 kb on + strand, within PP_0484 at 570.663 kb on + strand, within PP_0484 at 570.773 kb on + strand, within PP_0484 at 570.813 kb on + strand, within PP_0484 at 570.813 kb on + strand, within PP_0484 at 570.813 kb on + strand, within PP_0484 at 570.936 kb on + strand at 570.936 kb on + strand at 570.938 kb on + strand at 571.669 kb on + strand at 571.890 kb on - strand, within PP_0486 at 571.890 kb on - strand, within PP_0486 at 571.890 kb on - strand, within PP_0486 at 571.921 kb on + strand, within PP_0486 at 571.922 kb on - strand, within PP_0486 at 571.979 kb on + strand, within PP_0486 at 572.068 kb on - strand, within PP_0486 at 572.068 kb on - strand, within PP_0486 at 572.080 kb on - strand, within PP_0486 at 572.107 kb on + strand, within PP_0486 at 572.161 kb on + strand, within PP_0486 at 572.161 kb on + strand, within PP_0486 at 572.161 kb on + strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.163 kb on + strand, within PP_0486 at 572.163 kb on + strand, within PP_0486 at 572.163 kb on + strand, within PP_0486 at 572.164 kb on - strand, within PP_0486 at 572.164 kb on - strand, within PP_0486 at 572.182 kb on + strand, within PP_0486 at 572.182 kb on + strand, within PP_0486 at 572.200 kb on + strand, within PP_0486 at 572.200 kb on + strand, within PP_0486 at 572.227 kb on + strand, within PP_0486 at 572.227 kb on + strand, within PP_0486 at 572.231 kb on + strand, within PP_0486 at 572.231 kb on + strand, within PP_0486 at 572.231 kb on + strand, within PP_0486 at 572.232 kb on - strand, within PP_0486 at 572.232 kb on - strand, within PP_0486 at 572.232 kb on - strand, within PP_0486 at 572.232 kb on - strand, within PP_0486 at 572.454 kb on + strand, within PP_0486 at 572.455 kb on - strand, within PP_0486 at 572.455 kb on - strand, within PP_0486 at 572.455 kb on - strand, within PP_0486 at 572.556 kb on + strand, within PP_0486 at 572.556 kb on + strand, within PP_0486 at 572.556 kb on + strand, within PP_0486 at 572.557 kb on - strand, within PP_0486 at 572.559 kb on + strand, within PP_0486 at 572.559 kb on + strand, within PP_0486 at 572.560 kb on - strand, within PP_0486 at 572.560 kb on - strand, within PP_0486
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1 remove 570,393 + PP_0484 0.55 -2.1 570,394 - -1.0 570,394 - PP_0484 0.55 -1.5 570,444 + PP_0484 0.59 -3.0 570,444 + PP_0484 0.59 -1.0 570,444 + PP_0484 0.59 -1.0 570,445 - PP_0484 0.59 -1.8 570,445 - PP_0484 0.59 +0.8 570,445 - PP_0484 0.59 -2.6 570,514 + PP_0484 0.64 -0.9 570,515 - PP_0484 0.64 -1.2 570,516 + PP_0484 0.64 -1.5 570,516 + PP_0484 0.64 -1.1 570,516 + PP_0484 0.64 -0.0 570,663 + PP_0484 0.74 -2.8 570,773 + PP_0484 0.82 -0.5 570,813 + PP_0484 0.85 -1.3 570,813 + PP_0484 0.85 -1.0 570,813 + PP_0484 0.85 -2.5 570,936 + +0.0 570,936 + -0.9 570,938 + -2.1 571,669 + -1.8 571,890 - PP_0486 0.16 -0.2 571,890 - PP_0486 0.16 -1.1 571,890 - PP_0486 0.16 -4.3 571,921 + PP_0486 0.18 -0.5 571,922 - PP_0486 0.18 -0.7 571,979 + PP_0486 0.22 +1.3 572,068 - PP_0486 0.28 -1.3 572,068 - PP_0486 0.28 -0.1 572,080 - PP_0486 0.29 -1.1 572,107 + PP_0486 0.31 +0.7 572,161 + PP_0486 0.35 +1.0 572,161 + PP_0486 0.35 -1.2 572,161 + PP_0486 0.35 -0.5 572,162 - PP_0486 0.35 -0.4 572,162 - PP_0486 0.35 -2.6 572,162 - PP_0486 0.35 -1.7 572,162 - PP_0486 0.35 +1.3 572,162 - PP_0486 0.35 -1.7 572,162 - PP_0486 0.35 -0.4 572,163 + PP_0486 0.35 +0.3 572,163 + PP_0486 0.35 -0.9 572,163 + PP_0486 0.35 -0.1 572,164 - PP_0486 0.35 -0.5 572,164 - PP_0486 0.35 -0.2 572,182 + PP_0486 0.36 -2.4 572,182 + PP_0486 0.36 -0.8 572,200 + PP_0486 0.38 -1.4 572,200 + PP_0486 0.38 -0.4 572,227 + PP_0486 0.39 +0.6 572,227 + PP_0486 0.39 +0.5 572,231 + PP_0486 0.40 -1.5 572,231 + PP_0486 0.40 +0.8 572,231 + PP_0486 0.40 -2.8 572,232 - PP_0486 0.40 +0.2 572,232 - PP_0486 0.40 -0.5 572,232 - PP_0486 0.40 +0.7 572,232 - PP_0486 0.40 +0.2 572,454 + PP_0486 0.55 -1.2 572,455 - PP_0486 0.55 +0.5 572,455 - PP_0486 0.55 +0.7 572,455 - PP_0486 0.55 -0.9 572,556 + PP_0486 0.63 -0.7 572,556 + PP_0486 0.63 +0.8 572,556 + PP_0486 0.63 +0.1 572,557 - PP_0486 0.63 +0.6 572,559 + PP_0486 0.63 -0.2 572,559 + PP_0486 0.63 -0.8 572,560 - PP_0486 0.63 +0.2 572,560 - PP_0486 0.63 +0.1
Or see this region's nucleotide sequence