Experiment: Tetrahymena sp., Mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0481 and PP_0482 are separated by 163 nucleotides PP_0482 and PP_0483 are separated by 72 nucleotides PP_0483 and PP_0484 are separated by 129 nucleotides
PP_0481: PP_0481 - Catalase, at 564,521 to 565,960
_0481
PP_0482: PP_0482 - bacterioferritin, at 566,124 to 566,588
_0482
PP_0483: PP_0483 - excinuclease (uvrABC system protein A), at 566,661 to 569,495
_0483
PP_0484: PP_0484 - transporter of an unknown substrate, at 569,625 to 571,019
_0484
Position (kb) 566
567
568
569
570 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 565.673 kb on + strand, within PP_0481 at 565.762 kb on + strand, within PP_0481 at 565.769 kb on + strand, within PP_0481 at 565.770 kb on - strand, within PP_0481 at 565.834 kb on + strand at 565.834 kb on + strand at 565.887 kb on + strand at 565.887 kb on + strand at 565.887 kb on + strand at 565.892 kb on + strand at 565.892 kb on + strand at 565.893 kb on - strand at 565.917 kb on - strand at 566.010 kb on + strand at 566.011 kb on - strand at 566.066 kb on - strand at 566.066 kb on - strand at 566.086 kb on + strand at 566.086 kb on + strand at 566.086 kb on + strand at 566.086 kb on + strand at 566.087 kb on - strand at 566.095 kb on + strand at 566.095 kb on + strand at 566.096 kb on - strand at 566.143 kb on + strand at 566.144 kb on - strand at 566.144 kb on - strand at 566.144 kb on - strand at 566.144 kb on - strand at 566.151 kb on + strand at 566.151 kb on + strand at 566.152 kb on - strand at 566.152 kb on - strand at 566.196 kb on + strand, within PP_0482 at 566.196 kb on + strand, within PP_0482 at 566.196 kb on + strand, within PP_0482 at 566.217 kb on + strand, within PP_0482 at 566.218 kb on - strand, within PP_0482 at 566.218 kb on - strand, within PP_0482 at 566.244 kb on + strand, within PP_0482 at 566.360 kb on + strand, within PP_0482 at 566.361 kb on - strand, within PP_0482 at 566.403 kb on + strand, within PP_0482 at 566.403 kb on + strand, within PP_0482 at 566.404 kb on - strand, within PP_0482 at 566.404 kb on - strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.461 kb on - strand, within PP_0482 at 566.461 kb on - strand, within PP_0482 at 566.461 kb on - strand, within PP_0482 at 566.517 kb on + strand, within PP_0482 at 566.518 kb on - strand, within PP_0482 at 566.518 kb on - strand, within PP_0482 at 566.586 kb on + strand at 566.586 kb on + strand at 566.586 kb on + strand at 566.586 kb on + strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.607 kb on + strand at 566.630 kb on - strand at 566.659 kb on - strand at 567.220 kb on + strand, within PP_0483 at 567.970 kb on + strand, within PP_0483 at 569.518 kb on - strand at 569.529 kb on + strand at 569.530 kb on - strand at 569.530 kb on - strand at 569.567 kb on - strand at 569.705 kb on + strand at 569.706 kb on - strand at 569.734 kb on + strand at 569.745 kb on + strand at 569.802 kb on + strand, within PP_0484 at 569.802 kb on + strand, within PP_0484 at 569.803 kb on - strand, within PP_0484 at 569.803 kb on - strand, within PP_0484 at 569.878 kb on - strand, within PP_0484 at 569.911 kb on + strand, within PP_0484 at 569.911 kb on + strand, within PP_0484 at 569.912 kb on - strand, within PP_0484 at 569.912 kb on - strand, within PP_0484 at 569.933 kb on + strand, within PP_0484 at 570.393 kb on + strand, within PP_0484 at 570.394 kb on - strand at 570.394 kb on - strand, within PP_0484 at 570.444 kb on + strand, within PP_0484 at 570.444 kb on + strand, within PP_0484 at 570.444 kb on + strand, within PP_0484 at 570.445 kb on - strand, within PP_0484 at 570.445 kb on - strand, within PP_0484 at 570.445 kb on - strand, within PP_0484
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1 remove 565,673 + PP_0481 0.80 -0.2 565,762 + PP_0481 0.86 +0.7 565,769 + PP_0481 0.87 -1.4 565,770 - PP_0481 0.87 +0.6 565,834 + -2.6 565,834 + -1.0 565,887 + -3.2 565,887 + -1.4 565,887 + +1.2 565,892 + -1.7 565,892 + -1.4 565,893 - +1.3 565,917 - -1.2 566,010 + +0.4 566,011 - -0.4 566,066 - +0.6 566,066 - -1.3 566,086 + +1.0 566,086 + +0.2 566,086 + +0.3 566,086 + +0.9 566,087 - -1.2 566,095 + +0.2 566,095 + +1.4 566,096 - +0.5 566,143 + -1.0 566,144 - +0.3 566,144 - +0.0 566,144 - -0.3 566,144 - +0.3 566,151 + +1.0 566,151 + -1.2 566,152 - -0.8 566,152 - -1.0 566,196 + PP_0482 0.15 -1.0 566,196 + PP_0482 0.15 +0.8 566,196 + PP_0482 0.15 -1.3 566,217 + PP_0482 0.20 +1.8 566,218 - PP_0482 0.20 +1.6 566,218 - PP_0482 0.20 -1.9 566,244 + PP_0482 0.26 +0.0 566,360 + PP_0482 0.51 -0.1 566,361 - PP_0482 0.51 +0.6 566,403 + PP_0482 0.60 +1.0 566,403 + PP_0482 0.60 +0.1 566,404 - PP_0482 0.60 +0.3 566,404 - PP_0482 0.60 +0.1 566,460 + PP_0482 0.72 -0.3 566,460 + PP_0482 0.72 -0.6 566,460 + PP_0482 0.72 +0.8 566,460 + PP_0482 0.72 -0.5 566,460 + PP_0482 0.72 +1.5 566,461 - PP_0482 0.72 -0.8 566,461 - PP_0482 0.72 +0.5 566,461 - PP_0482 0.72 +1.1 566,517 + PP_0482 0.85 -3.2 566,518 - PP_0482 0.85 -2.0 566,518 - PP_0482 0.85 +0.3 566,586 + +0.1 566,586 + +1.0 566,586 + -0.0 566,586 + +0.7 566,587 - +0.2 566,587 - +0.4 566,587 - -0.2 566,587 - +0.2 566,587 - -0.7 566,587 - -1.4 566,607 + -1.9 566,630 - +1.0 566,659 - -1.4 567,220 + PP_0483 0.20 -1.0 567,970 + PP_0483 0.46 -0.4 569,518 - -0.3 569,529 + -1.9 569,530 - -0.1 569,530 - -0.4 569,567 - +0.4 569,705 + +0.4 569,706 - -3.1 569,734 + -1.8 569,745 + -0.2 569,802 + PP_0484 0.13 -2.1 569,802 + PP_0484 0.13 +0.4 569,803 - PP_0484 0.13 -0.9 569,803 - PP_0484 0.13 +1.1 569,878 - PP_0484 0.18 -1.0 569,911 + PP_0484 0.21 +0.3 569,911 + PP_0484 0.21 -2.5 569,912 - PP_0484 0.21 -1.4 569,912 - PP_0484 0.21 -2.0 569,933 + PP_0484 0.22 -1.9 570,393 + PP_0484 0.55 -2.1 570,394 - -1.0 570,394 - PP_0484 0.55 -1.5 570,444 + PP_0484 0.59 -3.0 570,444 + PP_0484 0.59 -1.0 570,444 + PP_0484 0.59 -1.0 570,445 - PP_0484 0.59 -1.8 570,445 - PP_0484 0.59 +0.8 570,445 - PP_0484 0.59 -2.6
Or see this region's nucleotide sequence