Strain Fitness in Pseudomonas putida KT2440 around PP_0312

Experiment: Tetrahymena sp., Mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0311 and PP_0312 overlap by 1 nucleotidesPP_0312 and PP_0313 are separated by 10 nucleotides PP_0311: PP_0311 - putative dimethylglycine dehydrogenase subunit, at 372,759 to 374,711 _0311 PP_0312: PP_0312 - electron transfer flavoprotein, alpha subunit, at 374,711 to 375,943 _0312 PP_0313: PP_0313 - putative electron transfer flavoprotein beta subunit, at 375,954 to 376,724 _0313 Position (kb) 374 375 376Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 373.997 kb on + strand, within PP_0311at 373.998 kb on - strand, within PP_0311at 374.021 kb on - strand, within PP_0311at 374.215 kb on - strand, within PP_0311at 374.236 kb on - strand, within PP_0311at 374.236 kb on - strand, within PP_0311at 374.259 kb on + strand, within PP_0311at 374.259 kb on + strand, within PP_0311at 374.259 kb on + strand, within PP_0311at 374.259 kb on + strand, within PP_0311at 374.260 kb on - strand, within PP_0311at 374.325 kb on + strand, within PP_0311at 374.325 kb on + strand, within PP_0311at 374.326 kb on - strand, within PP_0311at 374.326 kb on - strand, within PP_0311at 374.365 kb on - strand, within PP_0311at 374.496 kb on - strand, within PP_0311at 374.722 kb on + strandat 374.990 kb on + strand, within PP_0312at 374.990 kb on + strand, within PP_0312at 374.990 kb on + strand, within PP_0312at 374.991 kb on - strand, within PP_0312at 374.991 kb on - strand, within PP_0312at 374.991 kb on - strand, within PP_0312at 374.991 kb on - strand, within PP_0312at 375.185 kb on + strand, within PP_0312at 375.358 kb on + strand, within PP_0312at 375.615 kb on - strand, within PP_0312at 375.737 kb on + strand, within PP_0312at 375.737 kb on + strand, within PP_0312at 375.738 kb on - strand, within PP_0312at 375.738 kb on - strand, within PP_0312at 375.912 kb on - strandat 375.912 kb on - strandat 375.941 kb on + strandat 375.942 kb on - strandat 375.959 kb on + strandat 376.070 kb on + strand, within PP_0313at 376.201 kb on - strand, within PP_0313at 376.201 kb on - strand, within PP_0313at 376.736 kb on + strandat 376.736 kb on + strandat 376.842 kb on - strandat 376.861 kb on - strandat 376.937 kb on + strandat 376.937 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1
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373,997 + PP_0311 0.63 -0.8
373,998 - PP_0311 0.63 -0.5
374,021 - PP_0311 0.65 -0.7
374,215 - PP_0311 0.75 -2.8
374,236 - PP_0311 0.76 -3.5
374,236 - PP_0311 0.76 -0.6
374,259 + PP_0311 0.77 -0.4
374,259 + PP_0311 0.77 +0.2
374,259 + PP_0311 0.77 -1.3
374,259 + PP_0311 0.77 -3.2
374,260 - PP_0311 0.77 -2.3
374,325 + PP_0311 0.80 -0.1
374,325 + PP_0311 0.80 -2.2
374,326 - PP_0311 0.80 -0.6
374,326 - PP_0311 0.80 -1.2
374,365 - PP_0311 0.82 -1.7
374,496 - PP_0311 0.89 +0.0
374,722 + +0.7
374,990 + PP_0312 0.23 +0.4
374,990 + PP_0312 0.23 -4.7
374,990 + PP_0312 0.23 -2.0
374,991 - PP_0312 0.23 -0.8
374,991 - PP_0312 0.23 -1.7
374,991 - PP_0312 0.23 -0.9
374,991 - PP_0312 0.23 -2.0
375,185 + PP_0312 0.38 -1.0
375,358 + PP_0312 0.52 -1.0
375,615 - PP_0312 0.73 -0.5
375,737 + PP_0312 0.83 -1.4
375,737 + PP_0312 0.83 -0.2
375,738 - PP_0312 0.83 -3.1
375,738 - PP_0312 0.83 -1.8
375,912 - -0.6
375,912 - -2.9
375,941 + -1.2
375,942 - +0.5
375,959 + -0.4
376,070 + PP_0313 0.15 -3.4
376,201 - PP_0313 0.32 +0.0
376,201 - PP_0313 0.32 -3.4
376,736 + +0.9
376,736 + +1.6
376,842 - +1.0
376,861 - +0.7
376,937 + +0.2
376,937 + +0.2

Or see this region's nucleotide sequence