Strain Fitness in Pseudomonas putida KT2440 around PP_0103

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
107,896	+		PP_5426	0.15	+0.2
107,934	-		PP_5426	0.21	+0.8
107,934	-		PP_5426	0.21	-1.3
107,934	-		PP_5426	0.21	-0.3
107,934	-		PP_5426	0.21	+0.7
108,067	+		PP_5426	0.42	+0.7
108,068	-		PP_5426	0.42	+0.8
108,106	+		PP_5426	0.48	-0.8
108,107	-		PP_5426	0.48	+0.2
108,135	+		PP_5426	0.52	-2.3
108,135	+		PP_5426	0.52	+1.6
108,135	+		PP_5426	0.52	+1.1
108,135	+		PP_5426	0.52	-0.3
108,135	+		PP_5426	0.52	+0.9
108,136	-		PP_5426	0.52	-2.2
108,136	-		PP_5426	0.52	+0.1
108,136	-		PP_5426	0.52	-2.2
108,136	-		PP_5426	0.52	-0.9
108,172	+		PP_5426	0.58	-1.6
108,173	-		PP_5426	0.58	+0.5
108,192	+		PP_5426	0.61	+1.6
108,274	+		PP_5426	0.74	-0.6
108,274	+		PP_5426	0.74	+0.5
108,274	+		PP_5426	0.74	-1.0
108,275	-		PP_5426	0.74	-2.6
108,412	-				+0.8
108,412	-				+0.5
108,458	+				+1.2
108,458	+				-1.7
108,459	-				+0.0
108,459	-				+0.8
108,459	-				-0.7
108,459	-				+0.8
108,480	-				+0.4
108,485	-				-0.1
108,493	-				+1.6
108,494	+				-2.2
108,495	-				-0.1
108,513	-				-3.7
108,522	-				-0.1
108,522	-				-0.4
108,522	-				-1.2
108,566	+				-1.2
108,567	-				-0.8
108,664	+				+1.0
108,665	-				+0.2
108,665	-				+0.9
108,665	-				+0.2
108,665	-				+0.3
108,666	+				+0.8
108,667	-				+0.5
108,667	-				+1.0
108,667	-				-0.2
108,709	+				-0.5
108,709	+				-0.2
108,710	-				+0.0
108,710	-				+0.8
108,794	-				-0.9
108,794	-				-0.4
108,794	-				-0.4
109,121	+		PP_0103	0.28	-0.2
109,143	+		PP_0103	0.30	-1.0
109,143	+		PP_0103	0.30	-1.3
109,143	+		PP_0103	0.30	-2.7
109,144	-		PP_0103	0.30	-0.6
109,144	-		PP_0103	0.30	+0.5
109,144	-		PP_0103	0.30	+0.8
109,144	-		PP_0103	0.30	+0.2
109,203	+		PP_0103	0.35	-0.4
109,204	-		PP_0103	0.35	-0.9
109,294	-		PP_0103	0.43	-1.0
109,467	+		PP_0103	0.58	+1.1
109,468	-		PP_0103	0.58	+0.8
109,468	-		PP_0103	0.58	-1.1
109,468	-		PP_0103	0.58	-1.1
109,468	-		PP_0103	0.58	-0.3
109,468	-		PP_0103	0.58	-1.1
109,653	+		PP_0103	0.75	+1.0
109,653	+		PP_0103	0.75	-0.9
109,653	+		PP_0103	0.75	-1.9
109,654	-		PP_0103	0.75	-1.3
109,843	+				+1.3
109,844	-				-1.7
109,844	-				-0.2
109,844	-				+0.3
109,852	-				-0.1
109,852	-				+0.3
110,073	+				-1.6
110,073	+				+0.3
110,073	+				+0.8
110,073	+				+0.1
110,074	-				+1.6
110,092	+				+1.3
110,093	-				+0.6
110,093	-				+0.3
110,093	-				+0.6
110,093	-				+1.9
110,423	-		PP_0104	0.28	+0.2
110,423	-		PP_0104	0.28	-0.5
110,423	-		PP_0104	0.28	+1.1
110,443	+		PP_0104	0.29	-0.7
110,443	+		PP_0104	0.29	+0.2
110,444	-		PP_0104	0.29	-0.1
110,444	-		PP_0104	0.29	+0.4
110,444	-		PP_0104	0.29	-1.4
110,444	-		PP_0104	0.29	-1.7
110,444	-		PP_0104	0.29	+1.0
110,493	+		PP_0104	0.32	+0.5
110,633	+		PP_0104	0.41	-0.1
110,634	-		PP_0104	0.41	+0.3
110,634	-		PP_0104	0.41	-0.8
110,634	-		PP_0104	0.41	-0.1
110,634	-		PP_0104	0.41	-0.2
110,761	+		PP_0104	0.49	-2.3
110,761	+		PP_0104	0.49	+0.5
110,762	-		PP_0104	0.49	+0.3
110,836	+				+1.8
110,838	+		PP_0104	0.54	-0.1
110,838	+		PP_0104	0.54	-0.6
110,839	-		PP_0104	0.54	-0.7
110,851	+		PP_0104	0.55	+0.8
110,851	+		PP_0104	0.55	-0.8
110,851	+		PP_0104	0.55	+0.9
110,851	+		PP_0104	0.55	+0.6
110,851	+		PP_0104	0.55	-0.2
110,852	-		PP_0104	0.55	+1.0
110,901	+		PP_0104	0.58	-0.2
110,901	+		PP_0104	0.58	-0.4
110,901	+		PP_0104	0.58	+0.8
110,901	+		PP_0104	0.58	-0.9
110,902	-		PP_0104	0.58	-0.5
110,902	-		PP_0104	0.58	-0.6
110,902	-		PP_0104	0.58	-0.1
110,902	-		PP_0104	0.58	-0.5