Strain Fitness in Pseudomonas putida KT2440 around PP_0084

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
92,716	+		PP_0083	0.28	-2.5
92,717	-		PP_0083	0.28	-2.2
92,717	-		PP_0083	0.28	-3.7
92,717	-		PP_0083	0.28	-2.3
92,717	-		PP_0083	0.28	-4.7
92,745	+		PP_0083	0.30	-2.8
92,785	-		PP_0083	0.34	-5.2
92,785	-		PP_0083	0.34	-1.6
93,013	+		PP_0083	0.52	-3.0
93,014	-		PP_0083	0.52	-3.9
93,014	-		PP_0083	0.52	-3.7
93,172	+		PP_0083	0.65	-1.6
93,172	+		PP_0083	0.65	-2.9
93,173	-		PP_0083	0.65	-2.7
93,173	-		PP_0083	0.65	-1.1
93,173	-		PP_0083	0.65	-3.9
93,394	+		PP_0083	0.84	-2.2
93,394	+				-0.6
93,434	-		PP_0083	0.87	-1.9
93,526	+				-3.6
93,526	+				-2.3
93,577	+				-3.4
93,610	+				-1.9
93,611	-				+0.0
93,631	+				-3.7
93,631	+				-3.3
93,631	+				-0.6
93,631	+				-2.8
93,632	-				-1.0
93,636	+				-4.1
94,031	-		PP_0084	0.36	-2.8
94,142	+		PP_0084	0.49	+0.1
94,142	+		PP_0084	0.49	-0.9
94,143	-		PP_0084	0.49	+0.8
94,143	-		PP_0084	0.49	-2.6
94,358	+		PP_0084	0.73	+3.2
94,358	+		PP_0084	0.73	-0.6
94,358	+		PP_0084	0.73	-0.3
94,382	+		PP_0084	0.76	-1.4
94,383	-		PP_0084	0.76	-0.5
94,383	-		PP_0084	0.76	+0.1
94,383	-		PP_0084	0.76	+0.1
94,383	-		PP_0084	0.76	+0.7
94,383	-		PP_0084	0.76	-1.9
94,383	-		PP_0084	0.76	+0.0
94,385	+		PP_0084	0.76	+0.1
94,386	-		PP_0084	0.76	-0.4
94,386	-		PP_0084	0.76	-1.2
94,386	-		PP_0084	0.76	-1.7
94,386	-		PP_0084	0.76	-1.0
94,495	+		PP_0084	0.88	-1.4
94,496	-		PP_0084	0.88	-1.7
94,599	-				-0.6
94,612	+				-0.5
94,613	-				+1.8
94,619	+				+0.4
94,667	+		PP_0085	0.14	+0.5
94,667	+		PP_0085	0.14	+0.1
94,667	+		PP_0085	0.14	-0.9
94,667	+		PP_0085	0.14	+2.0
94,668	-		PP_0085	0.15	-1.6
94,668	-		PP_0085	0.15	-0.6
94,736	+		PP_0085	0.28	-0.6
94,737	-		PP_0085	0.29	-0.4
94,750	+		PP_0085	0.31	-0.4
94,900	-		PP_0085	0.62	-1.3
94,900	-		PP_0085	0.62	-1.5
94,939	+		PP_0085	0.70	-0.8
94,940	-		PP_0085	0.70	-0.2
94,940	-		PP_0085	0.70	-0.7
95,016	+		PP_0085	0.86	-2.2
95,017	-		PP_0085	0.86	-2.0
95,035	+		PP_0085	0.90	-0.9
95,036	-		PP_0085	0.90	+0.2
95,089	+				+0.9
95,090	-				+1.2
95,142	+		PP_0086	0.33	-0.6
95,142	+		PP_0086	0.33	-2.3
95,142	+		PP_0086	0.33	+0.3
95,280	+				+2.6
95,280	+				+0.5
95,280	+				+0.6
95,302	+				-0.5
95,303	-				-2.1
95,303	-				+0.1
95,303	-				-1.3
95,303	-				+0.3
95,303	-				-0.3
95,323	+				-1.4
95,324	-				-3.1
95,514	-		PP_0087	0.64	+0.4
95,563	+		PP_0087	0.83	+0.3
95,563	+		PP_0087	0.83	+0.5
95,564	-		PP_0087	0.83	-0.5