Strain Fitness in Pseudomonas putida KT2440 around PP_0071

Experiment: Tetrahymena sp., Mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0070 and PP_5425 are separated by 133 nucleotidesPP_5425 and PP_0071 are separated by 413 nucleotidesPP_0071 and PP_0072 are separated by 127 nucleotides PP_0070: PP_0070 - Threonylcarbamoyl-AMP synthase, at 80,386 to 80,943 _0070 PP_5425: PP_5425 - conserved protein of unknown function, at 81,077 to 81,277 _5425 PP_0071: PP_0071 - conserved protein of unknown function, at 81,691 to 82,023 _0071 PP_0072: PP_0072 - quinone oxidoreductase, at 82,151 to 83,128 _0072 Position (kb) 81 82 83Strain fitness (log2 ratio) -2 -1 0 1 2at 80.944 kb on + strandat 80.944 kb on + strandat 80.944 kb on + strandat 80.944 kb on + strandat 80.944 kb on + strandat 80.945 kb on - strandat 80.945 kb on - strandat 81.007 kb on + strandat 81.007 kb on + strandat 81.007 kb on + strandat 81.116 kb on + strand, within PP_5425at 81.116 kb on + strand, within PP_5425at 81.116 kb on + strand, within PP_5425at 81.117 kb on - strand, within PP_5425at 81.183 kb on - strand, within PP_5425at 81.183 kb on - strand, within PP_5425at 81.205 kb on + strand, within PP_5425at 81.206 kb on - strand, within PP_5425at 81.206 kb on - strand, within PP_5425at 81.244 kb on - strand, within PP_5425at 81.244 kb on - strand, within PP_5425at 81.270 kb on + strandat 81.271 kb on - strandat 81.318 kb on + strandat 81.334 kb on + strandat 81.334 kb on + strandat 81.368 kb on + strandat 81.369 kb on - strandat 81.369 kb on - strandat 81.369 kb on - strandat 81.391 kb on + strandat 81.392 kb on - strandat 81.451 kb on + strandat 81.451 kb on + strandat 81.452 kb on - strandat 81.456 kb on + strandat 81.457 kb on - strandat 81.457 kb on - strandat 81.505 kb on + strandat 81.506 kb on - strandat 81.548 kb on - strandat 81.618 kb on + strandat 81.636 kb on + strandat 81.648 kb on + strandat 81.649 kb on - strandat 81.649 kb on - strandat 81.673 kb on - strandat 81.704 kb on + strandat 81.704 kb on + strandat 81.704 kb on + strandat 81.705 kb on - strandat 81.705 kb on - strandat 81.705 kb on - strandat 81.705 kb on - strandat 81.737 kb on + strand, within PP_0071at 81.839 kb on + strand, within PP_0071at 81.839 kb on + strand, within PP_0071at 81.840 kb on - strand, within PP_0071at 81.840 kb on - strand, within PP_0071at 81.845 kb on + strand, within PP_0071at 81.845 kb on + strand, within PP_0071at 81.846 kb on - strand, within PP_0071at 81.846 kb on - strand, within PP_0071at 81.847 kb on + strand, within PP_0071at 81.848 kb on - strand, within PP_0071at 81.848 kb on - strand, within PP_0071at 81.848 kb on - strand, within PP_0071at 81.848 kb on - strand, within PP_0071at 81.848 kb on - strand, within PP_0071at 81.862 kb on + strand, within PP_0071at 81.969 kb on - strand, within PP_0071at 82.022 kb on - strandat 82.047 kb on + strandat 82.047 kb on + strandat 82.120 kb on + strandat 82.132 kb on + strandat 82.133 kb on - strandat 82.163 kb on + strandat 82.163 kb on + strandat 82.164 kb on - strandat 82.323 kb on + strand, within PP_0072at 82.323 kb on + strand, within PP_0072at 82.323 kb on + strand, within PP_0072at 82.323 kb on + strand, within PP_0072at 82.323 kb on + strand, within PP_0072at 82.323 kb on + strand, within PP_0072at 82.323 kb on + strand, within PP_0072at 82.323 kb on + strand, within PP_0072at 82.323 kb on + strand, within PP_0072at 82.324 kb on - strand, within PP_0072at 82.324 kb on - strand, within PP_0072at 82.350 kb on + strand, within PP_0072at 82.351 kb on - strand, within PP_0072at 82.351 kb on - strand, within PP_0072at 82.351 kb on - strand, within PP_0072at 82.351 kb on - strand, within PP_0072at 82.488 kb on + strand, within PP_0072at 82.488 kb on + strand, within PP_0072at 82.488 kb on + strand, within PP_0072at 82.488 kb on + strand, within PP_0072at 82.489 kb on - strand, within PP_0072at 82.489 kb on - strand, within PP_0072at 82.489 kb on - strand, within PP_0072at 82.527 kb on - strand, within PP_0072at 82.671 kb on - strand, within PP_0072at 82.671 kb on - strand, within PP_0072at 82.671 kb on - strand, within PP_0072at 82.671 kb on - strand, within PP_0072at 82.722 kb on + strand, within PP_0072at 82.722 kb on + strand, within PP_0072at 82.722 kb on + strand, within PP_0072at 82.722 kb on + strand, within PP_0072at 82.722 kb on + strand, within PP_0072at 82.723 kb on - strand, within PP_0072at 82.723 kb on - strand, within PP_0072at 82.723 kb on - strand, within PP_0072at 82.740 kb on + strand, within PP_0072at 82.740 kb on + strand, within PP_0072at 82.740 kb on + strand, within PP_0072at 82.740 kb on + strand, within PP_0072at 82.740 kb on + strand, within PP_0072at 82.740 kb on + strand, within PP_0072at 82.741 kb on - strand, within PP_0072at 82.827 kb on - strand, within PP_0072at 82.831 kb on + strand, within PP_0072at 82.831 kb on + strand, within PP_0072at 82.831 kb on + strand, within PP_0072at 82.831 kb on + strand, within PP_0072at 82.832 kb on - strand, within PP_0072at 82.832 kb on - strand, within PP_0072at 82.846 kb on - strand, within PP_0072at 82.887 kb on - strand, within PP_0072at 82.887 kb on - strand, within PP_0072at 82.887 kb on - strand, within PP_0072at 82.887 kb on - strand, within PP_0072at 82.887 kb on - strand, within PP_0072at 82.923 kb on - strand, within PP_0072at 82.923 kb on - strand, within PP_0072at 82.975 kb on - strand, within PP_0072at 82.975 kb on - strand, within PP_0072at 82.992 kb on + strand, within PP_0072at 82.993 kb on - strand, within PP_0072at 82.993 kb on - strand, within PP_0072at 82.996 kb on + strand, within PP_0072

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1
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80,944 + +1.1
80,944 + -1.4
80,944 + -0.6
80,944 + -0.7
80,944 + -0.3
80,945 - -0.0
80,945 - -0.7
81,007 + -0.4
81,007 + -0.5
81,007 + -1.2
81,116 + PP_5425 0.19 -2.0
81,116 + PP_5425 0.19 +0.5
81,116 + PP_5425 0.19 +0.4
81,117 - PP_5425 0.20 +1.1
81,183 - PP_5425 0.53 +0.6
81,183 - PP_5425 0.53 +1.6
81,205 + PP_5425 0.64 +0.6
81,206 - PP_5425 0.64 -0.4
81,206 - PP_5425 0.64 +0.7
81,244 - PP_5425 0.83 -0.5
81,244 - PP_5425 0.83 +0.5
81,270 + +0.8
81,271 - -1.9
81,318 + +0.8
81,334 + -1.0
81,334 + -0.3
81,368 + -1.1
81,369 - +0.4
81,369 - -1.7
81,369 - +0.3
81,391 + +0.4
81,392 - +0.1
81,451 + -1.2
81,451 + +2.1
81,452 - -2.6
81,456 + -0.7
81,457 - +0.9
81,457 - +0.9
81,505 + +1.0
81,506 - -0.4
81,548 - -1.3
81,618 + +0.2
81,636 + +0.5
81,648 + +0.1
81,649 - -0.1
81,649 - +0.4
81,673 - +0.5
81,704 + +1.5
81,704 + +0.0
81,704 + +0.1
81,705 - +1.2
81,705 - -1.5
81,705 - +1.3
81,705 - -0.1
81,737 + PP_0071 0.14 +0.1
81,839 + PP_0071 0.44 -1.1
81,839 + PP_0071 0.44 +0.4
81,840 - PP_0071 0.45 +0.3
81,840 - PP_0071 0.45 -1.8
81,845 + PP_0071 0.46 +0.6
81,845 + PP_0071 0.46 -1.9
81,846 - PP_0071 0.47 -2.7
81,846 - PP_0071 0.47 -0.8
81,847 + PP_0071 0.47 -0.9
81,848 - PP_0071 0.47 -1.4
81,848 - PP_0071 0.47 -0.9
81,848 - PP_0071 0.47 +0.3
81,848 - PP_0071 0.47 +0.6
81,848 - PP_0071 0.47 -0.2
81,862 + PP_0071 0.51 -0.5
81,969 - PP_0071 0.83 +0.0
82,022 - +0.8
82,047 + +0.9
82,047 + +0.3
82,120 + +1.7
82,132 + +0.5
82,133 - +0.4
82,163 + -2.5
82,163 + +0.4
82,164 - -0.0
82,323 + PP_0072 0.18 -1.3
82,323 + PP_0072 0.18 -0.7
82,323 + PP_0072 0.18 -0.2
82,323 + PP_0072 0.18 +1.1
82,323 + PP_0072 0.18 +0.1
82,323 + PP_0072 0.18 -1.0
82,323 + PP_0072 0.18 +1.4
82,323 + PP_0072 0.18 -0.3
82,323 + PP_0072 0.18 -1.6
82,324 - PP_0072 0.18 +0.2
82,324 - PP_0072 0.18 +0.2
82,350 + PP_0072 0.20 +0.1
82,351 - PP_0072 0.20 +1.9
82,351 - PP_0072 0.20 -0.5
82,351 - PP_0072 0.20 -1.1
82,351 - PP_0072 0.20 +1.5
82,488 + PP_0072 0.34 +0.3
82,488 + PP_0072 0.34 +0.9
82,488 + PP_0072 0.34 +0.2
82,488 + PP_0072 0.34 -0.9
82,489 - PP_0072 0.35 +0.1
82,489 - PP_0072 0.35 -1.9
82,489 - PP_0072 0.35 +2.0
82,527 - PP_0072 0.38 +2.1
82,671 - PP_0072 0.53 -0.3
82,671 - PP_0072 0.53 +0.0
82,671 - PP_0072 0.53 -0.3
82,671 - PP_0072 0.53 +1.7
82,722 + PP_0072 0.58 +0.5
82,722 + PP_0072 0.58 +0.7
82,722 + PP_0072 0.58 +0.6
82,722 + PP_0072 0.58 -1.3
82,722 + PP_0072 0.58 -0.8
82,723 - PP_0072 0.58 +1.3
82,723 - PP_0072 0.58 -0.4
82,723 - PP_0072 0.58 -0.4
82,740 + PP_0072 0.60 -0.3
82,740 + PP_0072 0.60 -2.6
82,740 + PP_0072 0.60 -0.8
82,740 + PP_0072 0.60 -0.4
82,740 + PP_0072 0.60 +0.1
82,740 + PP_0072 0.60 +0.5
82,741 - PP_0072 0.60 +0.3
82,827 - PP_0072 0.69 +0.3
82,831 + PP_0072 0.70 -0.1
82,831 + PP_0072 0.70 +0.3
82,831 + PP_0072 0.70 -0.5
82,831 + PP_0072 0.70 +0.0
82,832 - PP_0072 0.70 +0.6
82,832 - PP_0072 0.70 -1.7
82,846 - PP_0072 0.71 -0.5
82,887 - PP_0072 0.75 -0.7
82,887 - PP_0072 0.75 +0.5
82,887 - PP_0072 0.75 -0.3
82,887 - PP_0072 0.75 -0.3
82,887 - PP_0072 0.75 -0.8
82,923 - PP_0072 0.79 +0.6
82,923 - PP_0072 0.79 +0.2
82,975 - PP_0072 0.84 +0.5
82,975 - PP_0072 0.84 -0.6
82,992 + PP_0072 0.86 +0.9
82,993 - PP_0072 0.86 +1.1
82,993 - PP_0072 0.86 +1.0
82,996 + PP_0072 0.86 -0.1

Or see this region's nucleotide sequence