Strain Fitness in Pseudomonas putida KT2440 around PP_0034

Experiment: Tetrahymena sp., Mixed culture-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0033 and PP_0034 overlap by 7 nucleotidesPP_0034 and PP_0035 overlap by 35 nucleotidesPP_0035 and PP_0036 are separated by 257 nucleotides PP_0033: PP_0033 - putative undecaprenyl-glycosyl transferase, at 36,198 to 37,652 _0033 PP_0034: PP_0034 - putative bactoprenol glycosyl-transferase from phage origin, at 37,646 to 38,629 _0034 PP_0035: PP_0035 - putative bactoprenol-linked glycose transferase, at 38,595 to 39,014 _0035 PP_0036: PP_0036 - putative transcriptional regulator, at 39,272 to 40,240 _0036 Position (kb) 37 38 39Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 36.695 kb on - strand, within PP_0033at 36.695 kb on - strand, within PP_0033at 36.695 kb on - strand, within PP_0033at 36.695 kb on - strand, within PP_0033at 36.760 kb on + strand, within PP_0033at 36.761 kb on - strand, within PP_0033at 36.761 kb on - strand, within PP_0033at 36.761 kb on - strandat 36.807 kb on + strand, within PP_0033at 36.808 kb on - strand, within PP_0033at 36.808 kb on - strand, within PP_0033at 36.828 kb on + strand, within PP_0033at 36.863 kb on - strand, within PP_0033at 36.881 kb on + strand, within PP_0033at 36.882 kb on - strand, within PP_0033at 36.882 kb on - strand, within PP_0033at 36.882 kb on - strand, within PP_0033at 36.886 kb on + strand, within PP_0033at 36.887 kb on - strand, within PP_0033at 36.887 kb on - strand, within PP_0033at 36.887 kb on - strand, within PP_0033at 36.887 kb on - strand, within PP_0033at 36.887 kb on - strand, within PP_0033at 36.887 kb on - strand, within PP_0033at 36.906 kb on - strand, within PP_0033at 36.906 kb on - strand, within PP_0033at 36.946 kb on + strand, within PP_0033at 36.946 kb on + strand, within PP_0033at 36.946 kb on + strand, within PP_0033at 36.947 kb on - strand, within PP_0033at 36.947 kb on - strand, within PP_0033at 36.947 kb on - strand, within PP_0033at 36.947 kb on - strand, within PP_0033at 36.947 kb on - strand, within PP_0033at 36.985 kb on + strand, within PP_0033at 36.985 kb on + strand, within PP_0033at 36.985 kb on + strand, within PP_0033at 36.985 kb on + strand, within PP_0033at 36.985 kb on + strand, within PP_0033at 36.985 kb on + strand, within PP_0033at 36.985 kb on + strand, within PP_0033at 36.986 kb on - strand, within PP_0033at 36.986 kb on - strand, within PP_0033at 36.986 kb on - strand, within PP_0033at 36.986 kb on - strand, within PP_0033at 36.986 kb on - strand, within PP_0033at 36.986 kb on - strand, within PP_0033at 36.986 kb on - strand, within PP_0033at 36.986 kb on - strand, within PP_0033at 36.999 kb on + strand, within PP_0033at 37.000 kb on - strand, within PP_0033at 37.001 kb on + strand, within PP_0033at 37.001 kb on + strand, within PP_0033at 37.001 kb on + strand, within PP_0033at 37.001 kb on + strand, within PP_0033at 37.002 kb on - strand, within PP_0033at 37.002 kb on - strand, within PP_0033at 37.014 kb on + strand, within PP_0033at 37.014 kb on + strand, within PP_0033at 37.014 kb on + strand, within PP_0033at 37.014 kb on + strand, within PP_0033at 37.014 kb on + strand, within PP_0033at 37.015 kb on - strand, within PP_0033at 37.015 kb on - strand, within PP_0033at 37.015 kb on - strand, within PP_0033at 37.044 kb on + strand, within PP_0033at 37.064 kb on - strand, within PP_0033at 37.064 kb on - strand, within PP_0033at 37.067 kb on + strand, within PP_0033at 37.068 kb on - strand, within PP_0033at 37.159 kb on + strand, within PP_0033at 37.205 kb on - strand, within PP_0033at 37.205 kb on - strand, within PP_0033at 37.374 kb on + strand, within PP_0033at 37.375 kb on - strand, within PP_0033at 37.473 kb on + strand, within PP_0033at 37.481 kb on - strand, within PP_0033at 37.571 kb on - strandat 37.571 kb on - strandat 37.571 kb on - strandat 37.596 kb on + strandat 37.657 kb on + strandat 37.725 kb on + strandat 37.725 kb on + strandat 37.725 kb on + strandat 37.726 kb on - strandat 37.726 kb on - strandat 37.866 kb on + strand, within PP_0034at 37.866 kb on + strand, within PP_0034at 37.867 kb on - strand, within PP_0034at 37.867 kb on - strand, within PP_0034at 37.867 kb on - strand, within PP_0034at 38.016 kb on + strand, within PP_0034at 38.033 kb on - strand, within PP_0034at 38.042 kb on + strand, within PP_0034at 38.043 kb on - strand, within PP_0034at 38.184 kb on + strand, within PP_0034at 38.184 kb on + strand, within PP_0034at 38.184 kb on + strand, within PP_0034at 38.184 kb on + strand, within PP_0034at 38.184 kb on + strand, within PP_0034at 38.185 kb on - strand, within PP_0034at 38.185 kb on - strand, within PP_0034at 38.187 kb on + strand, within PP_0034at 38.187 kb on + strand, within PP_0034at 38.188 kb on - strand, within PP_0034at 38.275 kb on - strand, within PP_0034at 38.358 kb on - strand, within PP_0034at 38.414 kb on + strand, within PP_0034at 38.414 kb on + strand, within PP_0034at 38.414 kb on + strand, within PP_0034at 38.415 kb on - strand, within PP_0034at 38.415 kb on - strand, within PP_0034at 38.464 kb on + strand, within PP_0034at 38.465 kb on - strand, within PP_0034at 38.481 kb on + strand, within PP_0034at 38.481 kb on + strand, within PP_0034at 38.585 kb on + strandat 38.618 kb on + strandat 38.618 kb on + strandat 38.619 kb on - strandat 38.619 kb on - strandat 38.619 kb on - strandat 38.619 kb on - strandat 38.679 kb on + strand, within PP_0035at 38.738 kb on + strand, within PP_0035at 38.898 kb on - strand, within PP_0035at 38.922 kb on + strand, within PP_0035at 38.923 kb on - strand, within PP_0035at 39.087 kb on + strandat 39.112 kb on + strandat 39.204 kb on - strandat 39.271 kb on - strandat 39.295 kb on + strandat 39.295 kb on + strandat 39.296 kb on - strandat 39.314 kb on + strandat 39.348 kb on - strandat 39.433 kb on - strand, within PP_0036at 39.492 kb on - strand, within PP_0036at 39.542 kb on + strand, within PP_0036at 39.543 kb on - strand, within PP_0036at 39.543 kb on - strand, within PP_0036at 39.543 kb on - strand, within PP_0036at 39.607 kb on + strand, within PP_0036at 39.608 kb on - strand, within PP_0036at 39.608 kb on - strand, within PP_0036

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1
remove
36,695 - PP_0033 0.34 -0.1
36,695 - PP_0033 0.34 -0.9
36,695 - PP_0033 0.34 -0.0
36,695 - PP_0033 0.34 -4.0
36,760 + PP_0033 0.39 -0.2
36,761 - PP_0033 0.39 -1.4
36,761 - PP_0033 0.39 -0.5
36,761 - +0.8
36,807 + PP_0033 0.42 +1.0
36,808 - PP_0033 0.42 -2.0
36,808 - PP_0033 0.42 +1.0
36,828 + PP_0033 0.43 -1.0
36,863 - PP_0033 0.46 -3.7
36,881 + PP_0033 0.47 +0.4
36,882 - PP_0033 0.47 +0.1
36,882 - PP_0033 0.47 -0.9
36,882 - PP_0033 0.47 -1.5
36,886 + PP_0033 0.47 -1.8
36,887 - PP_0033 0.47 -1.2
36,887 - PP_0033 0.47 +1.6
36,887 - PP_0033 0.47 +1.4
36,887 - PP_0033 0.47 +0.7
36,887 - PP_0033 0.47 -1.1
36,887 - PP_0033 0.47 +0.2
36,906 - PP_0033 0.49 +0.2
36,906 - PP_0033 0.49 +1.4
36,946 + PP_0033 0.51 -0.7
36,946 + PP_0033 0.51 -1.2
36,946 + PP_0033 0.51 +0.9
36,947 - PP_0033 0.51 -0.4
36,947 - PP_0033 0.51 +0.1
36,947 - PP_0033 0.51 -1.0
36,947 - PP_0033 0.51 -0.2
36,947 - PP_0033 0.51 -1.0
36,985 + PP_0033 0.54 +0.1
36,985 + PP_0033 0.54 -1.2
36,985 + PP_0033 0.54 +0.5
36,985 + PP_0033 0.54 +0.0
36,985 + PP_0033 0.54 -0.1
36,985 + PP_0033 0.54 -0.1
36,985 + PP_0033 0.54 +0.8
36,986 - PP_0033 0.54 +1.4
36,986 - PP_0033 0.54 +0.3
36,986 - PP_0033 0.54 -1.3
36,986 - PP_0033 0.54 +0.7
36,986 - PP_0033 0.54 +1.1
36,986 - PP_0033 0.54 -0.2
36,986 - PP_0033 0.54 +1.2
36,986 - PP_0033 0.54 -0.7
36,999 + PP_0033 0.55 +0.6
37,000 - PP_0033 0.55 +0.5
37,001 + PP_0033 0.55 +0.9
37,001 + PP_0033 0.55 +0.2
37,001 + PP_0033 0.55 -0.1
37,001 + PP_0033 0.55 -0.4
37,002 - PP_0033 0.55 +0.3
37,002 - PP_0033 0.55 -0.2
37,014 + PP_0033 0.56 +0.7
37,014 + PP_0033 0.56 -0.7
37,014 + PP_0033 0.56 -1.5
37,014 + PP_0033 0.56 +0.9
37,014 + PP_0033 0.56 +0.3
37,015 - PP_0033 0.56 -0.3
37,015 - PP_0033 0.56 -2.1
37,015 - PP_0033 0.56 +1.1
37,044 + PP_0033 0.58 -2.2
37,064 - PP_0033 0.60 -1.0
37,064 - PP_0033 0.60 -1.0
37,067 + PP_0033 0.60 +1.3
37,068 - PP_0033 0.60 +1.1
37,159 + PP_0033 0.66 +0.4
37,205 - PP_0033 0.69 -0.5
37,205 - PP_0033 0.69 -4.5
37,374 + PP_0033 0.81 +0.9
37,375 - PP_0033 0.81 -1.3
37,473 + PP_0033 0.88 -0.5
37,481 - PP_0033 0.88 +0.6
37,571 - -0.6
37,571 - +0.3
37,571 - -0.5
37,596 + -0.0
37,657 + +1.0
37,725 + -1.5
37,725 + +1.1
37,725 + +0.5
37,726 - +0.1
37,726 - +0.3
37,866 + PP_0034 0.22 -1.2
37,866 + PP_0034 0.22 -1.6
37,867 - PP_0034 0.22 -0.9
37,867 - PP_0034 0.22 -0.6
37,867 - PP_0034 0.22 -0.7
38,016 + PP_0034 0.38 +0.1
38,033 - PP_0034 0.39 +0.3
38,042 + PP_0034 0.40 -0.3
38,043 - PP_0034 0.40 -1.0
38,184 + PP_0034 0.55 -1.2
38,184 + PP_0034 0.55 -0.3
38,184 + PP_0034 0.55 -0.2
38,184 + PP_0034 0.55 -1.2
38,184 + PP_0034 0.55 +0.4
38,185 - PP_0034 0.55 +0.2
38,185 - PP_0034 0.55 +0.7
38,187 + PP_0034 0.55 -3.2
38,187 + PP_0034 0.55 -0.7
38,188 - PP_0034 0.55 +2.3
38,275 - PP_0034 0.64 -1.1
38,358 - PP_0034 0.72 +1.4
38,414 + PP_0034 0.78 -1.5
38,414 + PP_0034 0.78 -2.6
38,414 + PP_0034 0.78 +2.4
38,415 - PP_0034 0.78 -1.1
38,415 - PP_0034 0.78 +0.5
38,464 + PP_0034 0.83 -1.2
38,465 - PP_0034 0.83 +0.0
38,481 + PP_0034 0.85 -0.3
38,481 + PP_0034 0.85 -1.5
38,585 + -0.6
38,618 + +1.1
38,618 + -0.5
38,619 - +0.5
38,619 - +0.8
38,619 - +1.5
38,619 - -0.7
38,679 + PP_0035 0.20 +4.1
38,738 + PP_0035 0.34 +1.7
38,898 - PP_0035 0.72 -0.3
38,922 + PP_0035 0.78 -1.8
38,923 - PP_0035 0.78 -2.2
39,087 + +0.4
39,112 + -1.9
39,204 - -1.3
39,271 - +0.7
39,295 + -0.9
39,295 + -0.8
39,296 - -0.8
39,314 + -0.7
39,348 - +0.4
39,433 - PP_0036 0.17 -1.7
39,492 - PP_0036 0.23 +0.4
39,542 + PP_0036 0.28 -0.3
39,543 - PP_0036 0.28 +0.4
39,543 - PP_0036 0.28 -0.1
39,543 - PP_0036 0.28 +0.3
39,607 + PP_0036 0.35 +0.6
39,608 - PP_0036 0.35 +0.6
39,608 - PP_0036 0.35 +0.4

Or see this region's nucleotide sequence