Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21310

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG

download strain data

Per-strain Table

Position	Strand	LocusTag	Fraction	Stem-Atlantic
				remove
4,609,293	+	DZA65_RS21305	0.46	+0.5
4,609,293	+	DZA65_RS21305	0.46	-0.8
4,609,351	+	DZA65_RS21305	0.50	+1.6
4,609,351	+	DZA65_RS21305	0.50	-0.4
4,609,351	+	DZA65_RS21305	0.50	+1.3
4,609,352	-	DZA65_RS21305	0.50	-0.1
4,609,352	-	DZA65_RS21305	0.50	-0.2
4,609,368	+	DZA65_RS21305	0.51	-0.8
4,609,408	-	DZA65_RS21305	0.53	+1.2
4,609,413	+	DZA65_RS21305	0.54	-1.6
4,609,492	+	DZA65_RS21305	0.59	-0.4
4,609,492	+	DZA65_RS21305	0.59	-1.6
4,609,493	-	DZA65_RS21305	0.59	+0.5
4,609,629	+	DZA65_RS21305	0.68	-0.4
4,609,629	+	DZA65_RS21305	0.68	+0.9
4,609,646	+	DZA65_RS21305	0.69	+0.2
4,609,646	+	DZA65_RS21305	0.69	-0.0
4,609,646	+	DZA65_RS21305	0.69	+0.5
4,609,647	-	DZA65_RS21305	0.69	+1.8
4,609,647	-	DZA65_RS21305	0.69	-0.0
4,609,647	-	DZA65_RS21305	0.69	-2.0
4,609,647	-	DZA65_RS21305	0.69	+1.0
4,609,681	+	DZA65_RS21305	0.72	-0.2
4,609,682	-	DZA65_RS21305	0.72	+0.2
4,609,682	-	DZA65_RS21305	0.72	+1.0
4,609,749	-	DZA65_RS21305	0.76	-1.3
4,609,749	-	DZA65_RS21305	0.76	+0.8
4,609,799	+	DZA65_RS21305	0.79	+0.6
4,609,816	+	DZA65_RS21305	0.81	-0.2
4,609,817	-	DZA65_RS21305	0.81	-0.1
4,609,817	-	DZA65_RS21305	0.81	+0.8
4,609,949	-	DZA65_RS21305	0.89	-1.8
4,609,949	-	DZA65_RS21305	0.89	+0.4
4,609,966	+			+0.4
4,609,967	-			+0.7
4,610,012	+			+0.5
4,610,082	+			-1.1
4,610,082	+			-1.5
4,610,083	-			-0.2
4,610,083	-			+0.1
4,610,120	+			+1.0
4,610,120	+			+0.9
4,610,120	+			+0.8
4,610,120	+			+0.5
4,610,120	+			-1.3
4,610,120	+			+3.0
4,610,120	+			+0.5
4,610,120	+			+3.2
4,610,120	+			+1.2
4,610,120	+			+1.0
4,610,120	+			+1.8
4,610,120	+			-0.0
4,610,120	+			-1.6
4,610,120	+			-2.2
4,610,121	-			+1.9
4,610,121	-			+1.2
4,610,121	-			-0.8
4,610,121	-			-0.0
4,610,121	-			+0.4
4,610,121	-			+1.7
4,610,126	+			+0.2
4,610,126	+			-0.6
4,610,126	+			+0.8
4,610,126	+			+0.2
4,610,126	+			-0.7
4,610,127	-			+0.4
4,610,127	-			-2.0
4,610,127	-			+0.7
4,610,127	-			+2.2
4,610,129	+			+0.2
4,610,129	+			+0.6
4,610,129	+			-0.9
4,610,129	+			-0.5
4,610,129	+			-0.4
4,610,129	+			-0.9
4,610,130	-			+0.9
4,610,130	-			+0.5
4,610,130	-			-1.0
4,610,130	-			+1.6
4,610,136	-			-0.6
4,610,136	-			+0.9
4,610,144	+			-0.2
4,610,184	+			+1.0
4,610,185	-			-0.3
4,610,185	-			-0.4
4,610,185	-			+1.2
4,610,191	+			-1.0
4,610,191	+			-0.4
4,610,191	+			-1.8
4,610,191	+			-0.4
4,610,191	+			-0.8
4,610,192	-			-0.8
4,610,192	-			-2.4
4,610,192	-			+0.5
4,610,192	-			+1.1
4,610,192	-			-1.1
4,610,207	-			-0.1
4,610,215	+			+0.3
4,610,215	+			+1.2
4,610,240	+			-0.3
4,610,240	+			+0.4
4,610,240	+			-0.8
4,610,240	+			-0.2
4,610,240	+			+0.5
4,610,240	+			-0.0
4,610,240	+			-1.2
4,610,240	+			+0.8
4,610,241	-			+1.8
4,610,241	-			-1.6
4,610,241	-			-0.3
4,610,241	-			+0.2
4,610,260	+			-0.6
4,610,261	-			+0.4
4,610,261	-			+0.5
4,610,261	-			+1.5
4,610,261	-			-0.0
4,610,261	-			+1.3
4,610,261	-			-0.4
4,610,261	-			-1.6
4,610,261	-			+0.4
4,610,261	-			+0.2
4,610,261	-			-0.6
4,610,437	+	DZA65_RS21310	0.14	-0.3
4,610,437	+	DZA65_RS21310	0.14	-0.8
4,610,437	+	DZA65_RS21310	0.14	-2.6
4,610,437	+	DZA65_RS21310	0.14	-0.2
4,610,437	+	DZA65_RS21310	0.14	-2.6
4,610,437	+	DZA65_RS21310	0.14	+0.2
4,610,437	+	DZA65_RS21310	0.14	-0.2
4,610,437	+	DZA65_RS21310	0.14	+0.2
4,610,437	+	DZA65_RS21310	0.14	-0.8
4,610,437	+	DZA65_RS21310	0.14	-2.0
4,610,438	-	DZA65_RS21310	0.15	+1.5
4,610,438	-	DZA65_RS21310	0.15	-1.8
4,610,438	-	DZA65_RS21310	0.15	-2.5
4,610,438	-	DZA65_RS21310	0.15	-0.4
4,610,438	-	DZA65_RS21310	0.15	+0.6
4,610,438	-	DZA65_RS21310	0.15	+0.9
4,610,438	-	DZA65_RS21310	0.15	-3.3
4,610,482	+	DZA65_RS21310	0.18	+0.6
4,610,482	+	DZA65_RS21310	0.18	-1.6
4,610,483	-	DZA65_RS21310	0.18	-1.6
4,610,483	-	DZA65_RS21310	0.18	+1.2
4,610,483	-			-1.1
4,610,505	-	DZA65_RS21310	0.19	-0.2
4,610,505	-	DZA65_RS21310	0.19	-0.7
4,610,505	-	DZA65_RS21310	0.19	-1.2
4,610,539	+	DZA65_RS21310	0.21	-0.1
4,610,539	+	DZA65_RS21310	0.21	+0.2
4,610,539	+	DZA65_RS21310	0.21	-1.1
4,610,540	-	DZA65_RS21310	0.21	-2.0
4,610,540	-	DZA65_RS21310	0.21	-0.4
4,610,540	-	DZA65_RS21310	0.21	-1.0
4,610,540	-	DZA65_RS21310	0.21	-3.0
4,610,543	-	DZA65_RS21310	0.22	-0.2
4,610,543	-	DZA65_RS21310	0.22	-2.1
4,610,607	+	DZA65_RS21310	0.26	-0.4
4,610,607	+	DZA65_RS21310	0.26	-0.8
4,610,607	+	DZA65_RS21310	0.26	+0.4
4,610,608	-	DZA65_RS21310	0.26	+0.2
4,610,608	-	DZA65_RS21310	0.26	+1.2
4,610,641	+	DZA65_RS21310	0.28	+0.5
4,610,641	+	DZA65_RS21310	0.28	-0.8
4,610,642	-	DZA65_RS21310	0.28	-1.8
4,610,642	-	DZA65_RS21310	0.28	+0.8
4,610,642	-	DZA65_RS21310	0.28	-0.6
4,610,956	+	DZA65_RS21310	0.50	+0.9
4,610,956	+	DZA65_RS21310	0.50	+1.2
4,610,957	-	DZA65_RS21310	0.50	-1.4
4,610,957	-	DZA65_RS21310	0.50	-0.8
4,611,208	+	DZA65_RS21310	0.67	-3.3
4,611,208	+	DZA65_RS21310	0.67	-1.1
4,611,208	+	DZA65_RS21310	0.67	-1.8
4,611,208	+	DZA65_RS21310	0.67	+0.2
4,611,208	+	DZA65_RS21310	0.67	+0.2
4,611,208	+	DZA65_RS21310	0.67	-0.2
4,611,208	+	DZA65_RS21310	0.67	+1.2
4,611,209	-	DZA65_RS21310	0.67	+1.2
4,611,209	-	DZA65_RS21310	0.67	-2.0
4,611,209	-	DZA65_RS21310	0.67	-1.1
4,611,209	-	DZA65_RS21310	0.67	-2.1
4,611,255	+	DZA65_RS21310	0.70	-1.4
4,611,256	-	DZA65_RS21310	0.70	+0.4
4,611,256	-	DZA65_RS21310	0.70	-0.8
4,611,256	-	DZA65_RS21310	0.70	+1.6
4,611,256	-	DZA65_RS21310	0.70	+0.6
4,611,256	-	DZA65_RS21310	0.70	-1.6
4,611,269	+	DZA65_RS21310	0.71	-1.1
4,611,270	-	DZA65_RS21310	0.71	-0.4
4,611,349	-	DZA65_RS21310	0.76	-1.1
4,611,357	+	DZA65_RS21310	0.77	-1.4
4,611,358	-	DZA65_RS21310	0.77	+0.4
4,611,358	-	DZA65_RS21310	0.77	-1.8
4,611,358	-	DZA65_RS21310	0.77	+0.8
4,611,427	+	DZA65_RS21310	0.81	+1.2
4,611,427	+	DZA65_RS21310	0.81	-0.1
4,611,427	+	DZA65_RS21310	0.81	+0.6
4,611,427	+	DZA65_RS21310	0.81	-0.3
4,611,427	+	DZA65_RS21310	0.81	-0.7
4,611,427	+			-2.3
4,611,427	+	DZA65_RS21310	0.81	-1.3
4,611,427	+	DZA65_RS21310	0.81	-0.8
4,611,427	+	DZA65_RS21310	0.81	+1.0
4,611,427	+	DZA65_RS21310	0.81	-0.4
4,611,427	+	DZA65_RS21310	0.81	+1.2
4,611,427	+	DZA65_RS21310	0.81	-0.7
4,611,428	-	DZA65_RS21310	0.81	+0.6
4,611,428	-	DZA65_RS21310	0.81	-0.4
4,611,428	-	DZA65_RS21310	0.81	+1.3
4,611,428	-	DZA65_RS21310	0.81	-2.0
4,611,428	-	DZA65_RS21310	0.81	-0.4
4,611,428	-	DZA65_RS21310	0.81	+0.8
4,611,428	-	DZA65_RS21310	0.81	-1.8
4,611,428	-	DZA65_RS21310	0.81	-2.9
4,611,428	-	DZA65_RS21310	0.81	-1.1
4,611,428	-	DZA65_RS21310	0.81	-0.8
4,611,428	-	DZA65_RS21310	0.81	+0.2
4,611,428	-	DZA65_RS21310	0.81	-1.0
4,611,441	-	DZA65_RS21310	0.82	-0.2
4,611,441	-	DZA65_RS21310	0.82	+0.6
4,611,508	+	DZA65_RS21310	0.87	+1.8
4,611,573	+			+0.8
4,611,573	+			-1.6
4,611,574	-			-1.4
4,611,574	-			-3.7
4,611,601	+			+1.2
4,611,601	+			-0.8
4,611,602	-			+2.2
4,611,683	+			-1.1
4,611,683	+			-0.2
4,611,683	+			+1.2
4,611,683	+			-2.4
4,611,683	+			+1.2
4,611,683	+			-1.4
4,611,684	-			-0.2
4,611,684	-			-1.4
4,611,684	-			-1.1
4,611,684	-			-0.5
4,611,691	+			-0.9
4,611,691	+			-2.1
4,611,691	+			-0.6
4,611,691	+			+0.8
4,611,691	+			-1.4
4,611,692	-			+0.6
4,611,692	-			+0.0
4,611,692	-			-1.6
4,611,720	+			-2.0
4,611,721	-			-0.6
4,611,740	+			-0.2
4,611,740	+			-0.4
4,611,740	+			-2.9
4,611,741	-			+0.6
4,611,741	-			+0.2
4,611,741	-			+0.5
4,611,741	-			-0.7
4,611,781	+			-0.4
4,611,781	+			+0.6
4,611,781	+			+2.2
4,611,781	+			-0.4
4,611,781	+			-2.3
4,611,782	-			-2.1
4,611,786	+			-0.9
4,611,786	+			-0.0
4,611,786	+			-2.5
4,611,786	+			-1.6
4,611,786	+			-0.5
4,611,786	+			-0.4
4,611,786	+			-0.0
4,611,786	+			+1.0
4,611,786	+			-1.6
4,611,787	-			-0.6
4,611,787	-			-1.8
4,611,787	-			+0.5
4,611,787	-			-0.0
4,611,787	-			+0.7
4,611,798	+			+0.2
4,611,798	+			-0.1
4,611,799	-			-0.8
4,611,799	-			+0.4
4,611,799	-			+0.6
4,611,799	-			-0.1
4,611,817	+			-0.5
4,611,817	+			-0.1
4,611,817	+			+0.0
4,611,818	-			-0.8
4,611,818	-			+0.5
4,611,818	-			+0.5
4,611,820	+			-0.5
4,611,820	+			-0.7
4,611,820	+			-0.7
4,611,821	-			+1.2
4,611,821	-			-0.5
4,611,821	-			-1.1
4,611,821	-			+0.3
4,611,821	-			-0.9
4,611,851	+			-1.4
4,611,851	+			+0.6
4,611,852	-			-0.2
4,611,878	+			+1.0
4,611,879	-			-0.4
4,611,879	-			-1.0
4,611,879	-			+0.5
4,611,948	+			+0.6
4,611,948	+			+1.5
4,611,949	-			+0.8
4,611,949	-			+1.0
4,612,177	+	DZA65_RS21315	0.34	-0.9
4,612,177	+	DZA65_RS21315	0.34	-0.0
4,612,177	+	DZA65_RS21315	0.34	+0.3
4,612,177	+	DZA65_RS21315	0.34	-0.7
4,612,178	-	DZA65_RS21315	0.35	+1.9
4,612,178	-			-2.3
4,612,178	-	DZA65_RS21315	0.35	+0.3
4,612,178	-	DZA65_RS21315	0.35	+0.9
4,612,344	+	DZA65_RS21315	0.53	+0.3
4,612,344	+	DZA65_RS21315	0.53	-1.6
4,612,344	+	DZA65_RS21315	0.53	-0.7
4,612,345	-	DZA65_RS21315	0.53	-1.3
4,612,345	-	DZA65_RS21315	0.53	-0.8
4,612,345	-	DZA65_RS21315	0.53	+0.6
4,612,512	+	DZA65_RS21315	0.72	-0.5
4,612,512	+	DZA65_RS21315	0.72	-0.7
4,612,512	+	DZA65_RS21315	0.72	+1.2
4,612,512	+	DZA65_RS21315	0.72	-0.6
4,612,513	-	DZA65_RS21315	0.72	+0.6
4,612,528	+	DZA65_RS21315	0.74	-0.0
4,612,528	+	DZA65_RS21315	0.74	+0.6
4,612,529	-	DZA65_RS21315	0.74	+1.7
4,612,563	+	DZA65_RS21315	0.78	+0.5
4,612,563	+	DZA65_RS21315	0.78	-0.2
4,612,563	+	DZA65_RS21315	0.78	+1.5
4,612,563	+	DZA65_RS21315	0.78	-0.8
4,612,563	+	DZA65_RS21315	0.78	+0.2
4,612,564	-	DZA65_RS21315	0.78	+0.8
4,612,564	-	DZA65_RS21315	0.78	-0.4
4,612,565	-	DZA65_RS21315	0.78	-0.6
4,612,607	+	DZA65_RS21315	0.83	+0.7
4,612,607	+	DZA65_RS21315	0.83	+1.2
4,612,607	+	DZA65_RS21315	0.83	-0.4
4,612,607	+	DZA65_RS21315	0.83	+1.2
4,612,607	+	DZA65_RS21315	0.83	-1.1
4,612,607	+	DZA65_RS21315	0.83	+1.8
4,612,608	-	DZA65_RS21315	0.83	+1.9
4,612,608	-	DZA65_RS21315	0.83	+0.6
4,612,635	+	DZA65_RS21315	0.86	+0.0
4,612,635	+	DZA65_RS21315	0.86	-1.0
4,612,665	+	DZA65_RS21315	0.89	-0.5
4,612,665	+	DZA65_RS21315	0.89	-1.6
4,612,665	+	DZA65_RS21315	0.89	+0.2
4,612,666	-	DZA65_RS21315	0.90	+1.2
4,612,666	-	DZA65_RS21315	0.90	+1.5
4,612,666	-	DZA65_RS21315	0.90	+0.3

Or see this region's nucleotide sequence