Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15680

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,404,108	+				-1.9
3,404,109	-		DZA65_RS15675	0.40	+1.3
3,404,122	+		DZA65_RS15675	0.41	+1.7
3,404,122	+		DZA65_RS15675	0.41	+0.3
3,404,123	-		DZA65_RS15675	0.41	-1.1
3,404,123	-		DZA65_RS15675	0.41	-1.1
3,404,153	+		DZA65_RS15675	0.43	-2.3
3,404,153	+		DZA65_RS15675	0.43	+1.3
3,404,153	+		DZA65_RS15675	0.43	-0.7
3,404,153	+		DZA65_RS15675	0.43	-1.7
3,404,154	-		DZA65_RS15675	0.43	-0.8
3,404,154	-		DZA65_RS15675	0.43	+0.6
3,404,189	-		DZA65_RS15675	0.46	-0.2
3,404,189	-		DZA65_RS15675	0.46	-0.3
3,404,189	-		DZA65_RS15675	0.46	+0.2
3,404,189	-		DZA65_RS15675	0.46	-0.1
3,404,261	+		DZA65_RS15675	0.50	-2.4
3,404,261	+		DZA65_RS15675	0.50	-0.1
3,404,261	+		DZA65_RS15675	0.50	-1.7
3,404,262	-		DZA65_RS15675	0.51	-0.5
3,404,262	-		DZA65_RS15675	0.51	-1.0
3,404,262	-		DZA65_RS15675	0.51	-0.1
3,404,328	-		DZA65_RS15675	0.55	-1.4
3,404,328	-		DZA65_RS15675	0.55	-2.7
3,404,359	+		DZA65_RS15675	0.57	+0.6
3,404,359	+		DZA65_RS15675	0.57	-0.7
3,404,360	-		DZA65_RS15675	0.57	-0.2
3,404,360	-		DZA65_RS15675	0.57	-1.1
3,404,543	+		DZA65_RS15675	0.69	-0.1
3,404,624	+		DZA65_RS15675	0.75	+0.1
3,404,624	+		DZA65_RS15675	0.75	-0.4
3,404,624	+		DZA65_RS15675	0.75	+1.9
3,404,625	-		DZA65_RS15675	0.75	-0.7
3,404,625	-		DZA65_RS15675	0.75	+0.7
3,404,625	-		DZA65_RS15675	0.75	-0.0
3,404,642	+		DZA65_RS15675	0.76	-1.2
3,404,643	-		DZA65_RS15675	0.76	-0.2
3,404,707	+		DZA65_RS15675	0.80	+0.9
3,404,707	+		DZA65_RS15675	0.80	-1.7
3,404,708	-		DZA65_RS15675	0.80	-1.1
3,404,708	-		DZA65_RS15675	0.80	-0.1
3,404,708	-		DZA65_RS15675	0.80	-1.1
3,404,708	-		DZA65_RS15675	0.80	+1.2
3,404,717	+		DZA65_RS15675	0.81	+0.5
3,405,019	-				+2.1
3,405,019	-				-0.7
3,405,019	-				-1.4
3,405,057	+				-0.3
3,405,057	+				+0.9
3,405,057	+				-1.7
3,405,057	+				-0.1
3,405,057	+				-1.3
3,405,057	+				+0.3
3,405,057	+				-1.2
3,405,057	+				+2.5
3,405,057	+				-2.3
3,405,058	-				+0.3
3,405,058	-				+0.1
3,405,058	-				+0.6
3,405,058	-				-0.7
3,405,058	-				+0.1
3,405,058	-				+0.5
3,405,058	-				-2.4
3,405,058	-				-1.9
3,405,058	-				-0.1
3,405,058	-				-2.3
3,405,103	+				+0.2
3,405,103	+				-0.0
3,405,103	+				+0.3
3,405,104	-				+0.9
3,405,104	-				-0.1
3,405,104	-				-1.1
3,405,104	-				-0.7
3,405,150	+				-1.0
3,405,150	+				-0.1
3,405,150	+				+2.3
3,405,150	+				+1.2
3,405,150	+				-1.1
3,405,151	-				-1.9
3,405,151	-				+0.2
3,405,151	-				-0.8
3,405,193	+				-1.3
3,405,193	+				+1.1
3,405,194	-				+0.1
3,405,223	+		DZA65_RS15680	0.10	+0.1
3,405,305	-		DZA65_RS15680	0.14	+0.0
3,405,427	+		DZA65_RS15680	0.20	+0.9
3,405,428	-		DZA65_RS15680	0.20	-0.2
3,405,428	-		DZA65_RS15680	0.20	+0.9
3,405,428	-		DZA65_RS15680	0.20	-0.1
3,405,428	-		DZA65_RS15680	0.20	-0.9
3,405,428	-		DZA65_RS15680	0.20	-0.3
3,405,428	-		DZA65_RS15680	0.20	-0.4
3,405,428	-		DZA65_RS15680	0.20	+0.4
3,405,529	+		DZA65_RS15680	0.25	+0.3
3,405,529	+		DZA65_RS15680	0.25	+0.3
3,405,529	+		DZA65_RS15680	0.25	-1.0
3,405,529	+		DZA65_RS15680	0.25	-1.2
3,405,530	-		DZA65_RS15680	0.25	+0.6
3,405,530	-		DZA65_RS15680	0.25	-0.7
3,405,530	-		DZA65_RS15680	0.25	-0.7
3,405,537	-		DZA65_RS15680	0.25	-1.1
3,405,537	-		DZA65_RS15680	0.25	-0.7
3,405,537	-		DZA65_RS15680	0.25	-1.1
3,405,537	-		DZA65_RS15680	0.25	+0.5
3,405,550	+		DZA65_RS15680	0.26	+0.5
3,405,703	+		DZA65_RS15680	0.33	-0.1
3,405,703	+		DZA65_RS15680	0.33	-0.3
3,405,703	+		DZA65_RS15680	0.33	-0.7
3,405,703	+		DZA65_RS15680	0.33	+1.1
3,405,703	+		DZA65_RS15680	0.33	+1.3
3,405,703	+		DZA65_RS15680	0.33	-0.7
3,405,703	+		DZA65_RS15680	0.33	-0.6
3,405,703	+		DZA65_RS15680	0.33	+0.3
3,405,703	+				+1.5
3,405,704	-		DZA65_RS15680	0.33	-0.9
3,405,704	-		DZA65_RS15680	0.33	-0.3
3,405,704	-		DZA65_RS15680	0.33	-1.1
3,405,704	-		DZA65_RS15680	0.33	-0.7
3,405,704	-		DZA65_RS15680	0.33	+0.1
3,405,704	-		DZA65_RS15680	0.33	-0.7
3,405,733	+		DZA65_RS15680	0.34	-0.3
3,405,733	+		DZA65_RS15680	0.34	+1.9
3,405,733	+		DZA65_RS15680	0.34	+0.3
3,405,733	+		DZA65_RS15680	0.34	-1.7
3,405,733	+		DZA65_RS15680	0.34	-0.5
3,405,734	-		DZA65_RS15680	0.34	-0.4
3,405,734	-		DZA65_RS15680	0.34	-0.3
3,405,734	-		DZA65_RS15680	0.34	+0.6
3,405,736	+		DZA65_RS15680	0.34	-2.3
3,405,737	-				-1.9
3,405,737	-		DZA65_RS15680	0.34	+0.1
3,405,765	+		DZA65_RS15680	0.36	-0.6
3,405,765	+		DZA65_RS15680	0.36	-0.1
3,405,766	-		DZA65_RS15680	0.36	-1.1
3,405,766	-		DZA65_RS15680	0.36	-0.9
3,405,971	+		DZA65_RS15680	0.45	-0.6
3,405,971	+		DZA65_RS15680	0.45	+0.9
3,405,972	-		DZA65_RS15680	0.45	-0.3
3,405,972	-		DZA65_RS15680	0.45	-1.4
3,405,972	-		DZA65_RS15680	0.45	-0.7
3,405,972	-		DZA65_RS15680	0.45	-0.2
3,406,012	+		DZA65_RS15680	0.47	+1.3
3,406,013	-		DZA65_RS15680	0.47	-0.7
3,406,013	-		DZA65_RS15680	0.47	-0.7
3,406,013	-		DZA65_RS15680	0.47	-1.5
3,406,057	+		DZA65_RS15680	0.49	+0.5
3,406,091	-		DZA65_RS15680	0.51	-0.7
3,406,108	+		DZA65_RS15680	0.52	-0.7
3,406,108	+		DZA65_RS15680	0.52	-1.0
3,406,109	-		DZA65_RS15680	0.52	-0.5
3,406,183	+		DZA65_RS15680	0.55	-0.6
3,406,183	+		DZA65_RS15680	0.55	-1.4
3,406,183	+		DZA65_RS15680	0.55	+1.7
3,406,183	+		DZA65_RS15680	0.55	+0.9
3,406,183	+		DZA65_RS15680	0.55	+0.9
3,406,183	+		DZA65_RS15680	0.55	-0.9
3,406,183	+		DZA65_RS15680	0.55	-1.0
3,406,183	+		DZA65_RS15680	0.55	-0.1
3,406,184	-		DZA65_RS15680	0.55	+0.1
3,406,184	-		DZA65_RS15680	0.55	-1.1
3,406,184	-		DZA65_RS15680	0.55	-0.3
3,406,184	-		DZA65_RS15680	0.55	+0.9
3,406,184	-		DZA65_RS15680	0.55	+0.5
3,406,184	-		DZA65_RS15680	0.55	+0.9
3,406,318	-		DZA65_RS15680	0.61	+1.4
3,406,318	-		DZA65_RS15680	0.61	-0.1
3,406,326	+		DZA65_RS15680	0.62	-1.1
3,406,326	+		DZA65_RS15680	0.62	-1.4
3,406,326	+		DZA65_RS15680	0.62	-0.1
3,406,326	+		DZA65_RS15680	0.62	-2.7
3,406,326	+		DZA65_RS15680	0.62	+0.5
3,406,327	-		DZA65_RS15680	0.62	-1.9
3,406,327	-		DZA65_RS15680	0.62	-0.1
3,406,327	-		DZA65_RS15680	0.62	-1.9
3,406,327	-		DZA65_RS15680	0.62	+1.3
3,406,327	-		DZA65_RS15680	0.62	-0.5
3,406,327	-		DZA65_RS15680	0.62	+1.5
3,406,327	-		DZA65_RS15680	0.62	+0.9
3,406,330	+		DZA65_RS15680	0.62	-0.4
3,406,330	+		DZA65_RS15680	0.62	+0.4
3,406,330	+		DZA65_RS15680	0.62	-2.1
3,406,331	-		DZA65_RS15680	0.62	-1.4
3,406,331	-		DZA65_RS15680	0.62	+0.5
3,406,331	-		DZA65_RS15680	0.62	-1.6
3,406,436	-		DZA65_RS15680	0.67	-1.9
3,406,436	-		DZA65_RS15680	0.67	+0.0
3,406,436	-		DZA65_RS15680	0.67	-0.4
3,406,542	+		DZA65_RS15680	0.72	-0.9
3,406,543	-		DZA65_RS15680	0.72	+0.0
3,406,543	-		DZA65_RS15680	0.72	-2.4
3,406,543	-		DZA65_RS15680	0.72	+0.2
3,406,543	-		DZA65_RS15680	0.72	+0.3
3,406,591	+		DZA65_RS15680	0.74	-0.4
3,406,591	+		DZA65_RS15680	0.74	+0.3
3,406,591	+		DZA65_RS15680	0.74	-1.0
3,406,592	-		DZA65_RS15680	0.74	-0.7
3,406,662	+		DZA65_RS15680	0.78	-0.6
3,406,662	+		DZA65_RS15680	0.78	+0.3
3,406,662	+		DZA65_RS15680	0.78	-0.7
3,406,793	-		DZA65_RS15680	0.84	+0.1
3,406,796	-		DZA65_RS15680	0.84	-0.7
3,406,807	+		DZA65_RS15680	0.84	+0.0
3,406,807	+		DZA65_RS15680	0.84	+0.5
3,406,819	+		DZA65_RS15680	0.85	-1.4
3,406,820	-		DZA65_RS15680	0.85	+0.3
3,406,844	+		DZA65_RS15680	0.86	+0.7
3,406,844	+		DZA65_RS15680	0.86	-1.1
3,406,844	+		DZA65_RS15680	0.86	-1.3
3,406,845	-		DZA65_RS15680	0.86	+0.3
3,406,845	-		DZA65_RS15680	0.86	+1.3
3,406,847	+		DZA65_RS15680	0.86	-1.6
3,406,848	-		DZA65_RS15680	0.86	-0.4
3,406,881	+		DZA65_RS15680	0.88	-1.1
3,406,881	+		DZA65_RS15680	0.88	-0.4
3,406,881	+		DZA65_RS15680	0.88	-1.2
3,406,882	-		DZA65_RS15680	0.88	-1.1
3,406,882	-		DZA65_RS15680	0.88	-0.3
3,406,882	-		DZA65_RS15680	0.88	+0.4
3,406,911	+		DZA65_RS15680	0.89	-1.3
3,406,911	+		DZA65_RS15680	0.89	-1.4
3,406,912	-		DZA65_RS15680	0.89	-0.8
3,406,914	+		DZA65_RS15680	0.89	+0.6
3,406,915	-		DZA65_RS15680	0.89	-0.6
3,406,915	-		DZA65_RS15680	0.89	-1.4
3,406,915	-		DZA65_RS15680	0.89	+1.9
3,406,915	-		DZA65_RS15680	0.89	-0.6
3,406,915	-		DZA65_RS15680	0.89	-0.1
3,406,915	-		DZA65_RS15680	0.89	-1.1
3,406,938	+				+0.3
3,406,938	+				+0.5
3,406,938	+				+1.5
3,406,938	+				-0.1
3,406,939	-				-0.9
3,406,939	-				+1.9
3,406,939	-				+0.5
3,406,978	+				+1.6
3,407,074	-				-0.1
3,407,168	+				-0.1
3,407,170	+				+0.3
3,407,170	+				-0.3
3,407,170	+				-1.1
3,407,170	+				+0.3
3,407,170	+				+0.1
3,407,170	+				+0.9
3,407,170	+				-0.7
3,407,170	+				-0.1
3,407,170	+				-0.1
3,407,170	+				-0.2
3,407,170	+				-0.7
3,407,170	+				+0.4
3,407,171	-				+1.3
3,407,171	-				-1.7
3,407,171	-				-0.6
3,407,171	-				-0.7
3,407,171	-				+1.2
3,407,171	-				+1.9
3,407,171	-				-0.9
3,407,171	-				-1.7
3,407,171	-				+0.5
3,407,171	-				-1.9
3,407,171	-				+0.9
3,407,171	-				-0.3
3,407,171	-				-0.3
3,407,174	+				-1.3
3,407,175	-				-0.7
3,407,216	+				-0.1
3,407,216	+				+0.3
3,407,216	+				-0.2
3,407,217	-				-0.3
3,407,217	-				+1.1
3,407,217	-				-0.1
3,407,268	+		DZA65_RS15685	0.15	+0.9
3,407,268	+		DZA65_RS15685	0.15	-0.9
3,407,268	+		DZA65_RS15685	0.15	-0.7
3,407,269	-		DZA65_RS15685	0.15	+0.9
3,407,323	+		DZA65_RS15685	0.22	+2.3
3,407,323	+		DZA65_RS15685	0.22	-1.0
3,407,324	-		DZA65_RS15685	0.22	-0.9
3,407,404	+		DZA65_RS15685	0.32	+0.1
3,407,404	+		DZA65_RS15685	0.32	+0.7
3,407,404	+		DZA65_RS15685	0.32	-1.7
3,407,405	-		DZA65_RS15685	0.32	-1.9
3,407,405	-		DZA65_RS15685	0.32	-0.4
3,407,405	-		DZA65_RS15685	0.32	-1.1
3,407,494	+		DZA65_RS15685	0.43	+0.3
3,407,494	+		DZA65_RS15685	0.43	-0.1
3,407,495	-		DZA65_RS15685	0.43	+0.9
3,407,495	-		DZA65_RS15685	0.43	-1.1
3,407,495	-		DZA65_RS15685	0.43	+0.3
3,407,495	-		DZA65_RS15685	0.43	-0.7
3,407,495	-		DZA65_RS15685	0.43	+0.7
3,407,524	+		DZA65_RS15685	0.46	-0.1
3,407,572	+		DZA65_RS15685	0.52	-2.4
3,407,573	-		DZA65_RS15685	0.52	+0.1
3,407,627	+		DZA65_RS15685	0.59	-0.3
3,407,636	+		DZA65_RS15685	0.60	-2.1
3,407,636	+		DZA65_RS15685	0.60	+0.1
3,407,637	-		DZA65_RS15685	0.60	+1.8
3,407,705	+		DZA65_RS15685	0.68	-1.7
3,407,705	+		DZA65_RS15685	0.68	-0.5
3,407,706	-		DZA65_RS15685	0.68	-0.1
3,407,706	-		DZA65_RS15685	0.68	+0.4
3,407,706	-		DZA65_RS15685	0.68	-1.6
3,407,739	-		DZA65_RS15685	0.73	-0.9
3,407,768	+		DZA65_RS15685	0.76	+0.9
3,407,768	+		DZA65_RS15685	0.76	-0.1
3,407,768	+		DZA65_RS15685	0.76	-4.0
3,407,769	-		DZA65_RS15685	0.76	+0.0
3,407,769	-		DZA65_RS15685	0.76	+0.0
3,407,855	+		DZA65_RS15685	0.87	+0.9
3,407,855	+		DZA65_RS15685	0.87	-2.3
3,407,905	+				-0.9
3,407,905	+				-0.1
3,407,905	+				-0.8
3,407,938	-				-0.1
3,407,957	+				+0.5
3,407,958	-				+0.3
3,407,958	-				-0.7
3,407,958	-				+0.0
3,407,958	-				-2.9
3,407,974	+				-0.4
3,407,974	+				+0.9
3,407,980	+				-0.2
3,407,980	+				+0.2
3,407,980	+				+1.1
3,407,980	+				+0.1
3,407,980	+				-0.5
3,407,980	+				-1.1
3,407,980	+				-1.0
3,407,980	+				-0.1
3,407,980	+				-0.6
3,407,981	-				-1.9
3,407,981	-				+1.2
3,407,981	-				-2.4
3,407,981	-				+0.3
3,408,023	+				-1.2
3,408,032	+				+1.1
3,408,032	+				+0.9
3,408,033	-				+0.9
3,408,033	-				+0.7
3,408,033	-				+1.1
3,408,033	-				-0.0
3,408,033	-				-0.7
3,408,080	-				+1.9
3,408,087	+				-1.0
3,408,087	+				-1.7
3,408,087	+				+0.1
3,408,087	+				-0.4
3,408,088	-				+0.3
3,408,088	-				+0.2
3,408,088	-				-1.7
3,408,118	+				-0.0
3,408,120	+				-0.1
3,408,120	+				-0.3
3,408,120	+				+0.9
3,408,120	+				-0.1
3,408,120	+				+0.3
3,408,120	+				-1.1
3,408,121	-				+2.5
3,408,121	-				-1.6
3,408,121	-				-0.6
3,408,121	-				-1.4
3,408,121	-				+0.3
3,408,121	-				-0.3
3,408,121	-				+0.9
3,408,121	-				+0.1
3,408,121	-				+1.1
3,408,121	-				+2.5
3,408,121	-				-0.1
3,408,121	-				+2.1
3,408,121	-				+0.6