Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15510

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,360,033	-		DZA65_RS15505	0.38	+0.0
3,360,080	+		DZA65_RS15505	0.42	-0.5
3,360,080	+		DZA65_RS15505	0.42	-0.7
3,360,080	+		DZA65_RS15505	0.42	-1.7
3,360,080	+		DZA65_RS15505	0.42	-0.9
3,360,080	+		DZA65_RS15505	0.42	-1.7
3,360,080	+		DZA65_RS15505	0.42	-1.4
3,360,081	-		DZA65_RS15505	0.42	+0.4
3,360,160	+		DZA65_RS15505	0.48	+0.0
3,360,161	-		DZA65_RS15505	0.48	-1.4
3,360,161	-		DZA65_RS15505	0.48	+0.4
3,360,161	-		DZA65_RS15505	0.48	+2.1
3,360,206	+		DZA65_RS15505	0.52	-0.7
3,360,206	+		DZA65_RS15505	0.52	+0.6
3,360,206	+		DZA65_RS15505	0.52	+0.3
3,360,207	-		DZA65_RS15505	0.52	+0.9
3,360,207	-		DZA65_RS15505	0.52	-0.6
3,360,207	-		DZA65_RS15505	0.52	+1.4
3,360,218	-		DZA65_RS15505	0.53	-1.1
3,360,218	-		DZA65_RS15505	0.53	-1.7
3,360,395	+		DZA65_RS15505	0.67	+1.1
3,360,395	+		DZA65_RS15505	0.67	-0.5
3,360,395	+		DZA65_RS15505	0.67	+0.4
3,360,395	+		DZA65_RS15505	0.67	-0.3
3,360,395	+		DZA65_RS15505	0.67	-1.1
3,360,396	-		DZA65_RS15505	0.67	-0.1
3,360,396	-		DZA65_RS15505	0.67	+0.9
3,360,396	-		DZA65_RS15505	0.67	+0.5
3,360,397	+		DZA65_RS15505	0.67	+0.4
3,360,398	-		DZA65_RS15505	0.67	-0.8
3,360,398	-		DZA65_RS15505	0.67	+1.5
3,360,398	-		DZA65_RS15505	0.67	+0.9
3,360,407	+		DZA65_RS15505	0.68	+0.7
3,360,408	-				+0.9
3,360,408	-		DZA65_RS15505	0.68	+0.9
3,360,408	-		DZA65_RS15505	0.68	+0.1
3,360,408	-		DZA65_RS15505	0.68	-0.3
3,360,451	+		DZA65_RS15505	0.71	+1.7
3,360,497	+		DZA65_RS15505	0.75	+0.9
3,360,521	+		DZA65_RS15505	0.77	-0.7
3,360,521	+		DZA65_RS15505	0.77	-0.1
3,360,521	+		DZA65_RS15505	0.77	-1.6
3,360,521	+		DZA65_RS15505	0.77	-0.2
3,360,521	+		DZA65_RS15505	0.77	-0.4
3,360,521	+		DZA65_RS15505	0.77	-0.1
3,360,521	+		DZA65_RS15505	0.77	-0.7
3,360,521	+		DZA65_RS15505	0.77	-0.1
3,360,521	+		DZA65_RS15505	0.77	-1.1
3,360,521	+		DZA65_RS15505	0.77	-1.3
3,360,522	-		DZA65_RS15505	0.77	+0.4
3,360,522	-		DZA65_RS15505	0.77	-0.1
3,360,522	-		DZA65_RS15505	0.77	-2.1
3,360,522	-		DZA65_RS15505	0.77	+0.4
3,360,522	-		DZA65_RS15505	0.77	+0.1
3,360,522	-		DZA65_RS15505	0.77	+1.5
3,360,522	-		DZA65_RS15505	0.77	+0.5
3,360,522	-		DZA65_RS15505	0.77	-1.8
3,360,522	-		DZA65_RS15505	0.77	-2.9
3,360,522	-		DZA65_RS15505	0.77	+1.2
3,360,522	-		DZA65_RS15505	0.77	-1.4
3,360,522	-		DZA65_RS15505	0.77	-1.1
3,360,524	+		DZA65_RS15505	0.77	+0.2
3,360,524	+		DZA65_RS15505	0.77	+0.8
3,360,524	+		DZA65_RS15505	0.77	+0.1
3,360,524	+		DZA65_RS15505	0.77	-0.3
3,360,524	+		DZA65_RS15505	0.77	-0.7
3,360,524	+				+1.5
3,360,525	-		DZA65_RS15505	0.77	-0.7
3,360,525	-		DZA65_RS15505	0.77	-0.7
3,360,525	-		DZA65_RS15505	0.77	+0.1
3,360,525	-		DZA65_RS15505	0.77	-1.9
3,360,525	-		DZA65_RS15505	0.77	+0.3
3,360,525	-		DZA65_RS15505	0.77	-1.2
3,360,525	-		DZA65_RS15505	0.77	+0.5
3,360,525	-		DZA65_RS15505	0.77	-0.7
3,360,525	-		DZA65_RS15505	0.77	-0.3
3,360,527	+		DZA65_RS15505	0.77	+0.9
3,360,527	+		DZA65_RS15505	0.77	-1.6
3,360,527	+		DZA65_RS15505	0.77	-1.1
3,360,527	+		DZA65_RS15505	0.77	+0.6
3,360,528	-		DZA65_RS15505	0.77	-0.1
3,360,647	+		DZA65_RS15505	0.87	+0.5
3,360,647	+		DZA65_RS15505	0.87	+0.7
3,360,647	+		DZA65_RS15505	0.87	+0.9
3,360,647	+		DZA65_RS15505	0.87	+0.2
3,360,647	+		DZA65_RS15505	0.87	+0.9
3,360,647	+		DZA65_RS15505	0.87	-0.4
3,360,647	+		DZA65_RS15505	0.87	+0.3
3,360,648	-		DZA65_RS15505	0.87	+0.0
3,360,648	-		DZA65_RS15505	0.87	+0.3
3,360,648	-		DZA65_RS15505	0.87	+0.3
3,360,648	-		DZA65_RS15505	0.87	-0.7
3,360,689	+				+0.6
3,360,689	+				-0.7
3,360,689	+				+1.3
3,360,689	+				-0.4
3,360,689	+				-0.1
3,360,690	-				-1.7
3,360,690	-				+0.2
3,360,690	-				+0.4
3,360,690	-				+0.9
3,360,690	-				-1.3
3,360,690	-				-0.1
3,360,690	-				-2.1
3,360,690	-				+2.0
3,360,690	-				+0.9
3,360,749	+				+0.3
3,360,749	+				+1.1
3,360,749	+				-2.6
3,360,750	-				-0.9
3,360,750	-				+0.9
3,360,750	-				-1.4
3,360,782	+				-0.9
3,360,782	+				+0.3
3,360,783	-				+0.1
3,360,800	+				-0.7
3,360,801	-				-0.4
3,360,801	-				+2.9
3,360,822	-				+0.1
3,360,858	-				-0.3
3,360,902	+				-1.1
3,360,902	+				+0.3
3,360,903	-				-0.7
3,360,917	-				-0.1
3,360,937	+				-0.5
3,360,937	+				-1.1
3,360,937	+				-0.3
3,360,937	+				-0.9
3,360,937	+				+0.5
3,360,938	-				-2.4
3,360,938	-				-0.5
3,360,938	-				-0.9
3,360,938	-				+0.1
3,360,938	-				+1.1
3,360,938	-				+0.7
3,360,964	+				-1.4
3,360,964	+				-0.2
3,360,965	-				+0.1
3,361,151	+		DZA65_RS15510	0.15	+0.9
3,361,152	-		DZA65_RS15510	0.15	+0.5
3,361,194	+		DZA65_RS15510	0.18	+0.3
3,361,195	-		DZA65_RS15510	0.18	+1.2
3,361,195	-		DZA65_RS15510	0.18	+1.2
3,361,195	-		DZA65_RS15510	0.18	-1.0
3,361,195	-		DZA65_RS15510	0.18	+0.5
3,361,285	+		DZA65_RS15510	0.24	-2.3
3,361,286	-		DZA65_RS15510	0.24	+0.3
3,361,286	-		DZA65_RS15510	0.24	+0.9
3,361,286	-		DZA65_RS15510	0.24	-0.7
3,361,294	-		DZA65_RS15510	0.24	-0.2
3,361,342	+		DZA65_RS15510	0.27	+0.2
3,361,342	+		DZA65_RS15510	0.27	-1.2
3,361,343	-		DZA65_RS15510	0.27	-0.7
3,361,343	-		DZA65_RS15510	0.27	+1.0
3,361,343	-		DZA65_RS15510	0.27	+0.6
3,361,343	-		DZA65_RS15510	0.27	+0.7
3,361,343	-		DZA65_RS15510	0.27	+1.3
3,361,343	-		DZA65_RS15510	0.27	+0.6
3,361,343	-		DZA65_RS15510	0.27	-0.2
3,361,377	+		DZA65_RS15510	0.29	+0.0
3,361,377	+		DZA65_RS15510	0.29	+0.6
3,361,378	-		DZA65_RS15510	0.29	+0.0
3,361,378	-		DZA65_RS15510	0.29	-0.4
3,361,388	+		DZA65_RS15510	0.30	+1.2
3,361,388	+		DZA65_RS15510	0.30	-1.2
3,361,388	+		DZA65_RS15510	0.30	-0.1
3,361,389	-		DZA65_RS15510	0.30	+0.5
3,361,389	-		DZA65_RS15510	0.30	-0.7
3,361,503	-		DZA65_RS15510	0.37	-1.4
3,361,558	+		DZA65_RS15510	0.41	+0.3
3,361,559	-		DZA65_RS15510	0.41	-0.3
3,361,559	-		DZA65_RS15510	0.41	-0.7
3,361,560	+		DZA65_RS15510	0.41	+1.3
3,361,560	+		DZA65_RS15510	0.41	-1.4
3,361,561	-		DZA65_RS15510	0.41	+1.5
3,361,561	-		DZA65_RS15510	0.41	+0.0
3,361,582	-		DZA65_RS15510	0.42	+0.9
3,361,582	-		DZA65_RS15510	0.42	+0.9
3,361,636	+		DZA65_RS15510	0.46	+0.5
3,361,636	+		DZA65_RS15510	0.46	+1.7
3,361,636	+		DZA65_RS15510	0.46	+0.3
3,361,637	-		DZA65_RS15510	0.46	+1.2
3,361,833	-		DZA65_RS15510	0.58	+1.1
3,361,833	-		DZA65_RS15510	0.58	-0.1
3,361,833	-		DZA65_RS15510	0.58	+0.3
3,361,833	-		DZA65_RS15510	0.58	+0.9
3,361,876	+		DZA65_RS15510	0.61	-0.4
3,361,876	+		DZA65_RS15510	0.61	+1.5
3,361,876	+		DZA65_RS15510	0.61	+0.3
3,361,877	-		DZA65_RS15510	0.61	-1.0
3,361,877	-		DZA65_RS15510	0.61	-0.1
3,361,877	-		DZA65_RS15510	0.61	-0.1
3,361,877	-		DZA65_RS15510	0.61	+0.5
3,361,877	-		DZA65_RS15510	0.61	+0.9
3,361,901	+		DZA65_RS15510	0.63	-0.3
3,362,044	+		DZA65_RS15510	0.72	-0.7
3,362,044	+		DZA65_RS15510	0.72	+1.1
3,362,044	+		DZA65_RS15510	0.72	-0.1
3,362,045	-		DZA65_RS15510	0.72	+0.5
3,362,045	-		DZA65_RS15510	0.72	+0.5
3,362,048	+		DZA65_RS15510	0.72	+0.3
3,362,049	-		DZA65_RS15510	0.72	-0.7
3,362,049	-		DZA65_RS15510	0.72	-0.1
3,362,049	-		DZA65_RS15510	0.72	+0.3
3,362,049	-		DZA65_RS15510	0.72	-0.1
3,362,091	-		DZA65_RS15510	0.75	+0.3
3,362,137	+		DZA65_RS15510	0.78	+0.3
3,362,137	+		DZA65_RS15510	0.78	-1.1
3,362,227	+		DZA65_RS15510	0.83	-1.4
3,362,227	+		DZA65_RS15510	0.83	+0.1
3,362,228	-		DZA65_RS15510	0.84	+0.0
3,362,228	-		DZA65_RS15510	0.84	+2.1
3,362,267	+		DZA65_RS15510	0.86	-0.1
3,362,343	+				-0.1
3,362,344	-				-1.0
3,362,344	-				+0.6
3,362,349	+				+0.0
3,362,349	+				+0.0
3,362,350	-				-0.6
3,362,354	-				-0.7
3,362,354	-				-1.1
3,362,354	-				-0.1
3,362,354	-				+0.7
3,362,354	-				+0.3
3,362,354	-				-0.7
3,362,354	-				-0.9
3,362,490	+				-1.7
3,362,490	+				+1.5
3,362,490	+				-0.1
3,362,490	+				-1.1
3,362,490	+				-2.1
3,362,490	+				+0.9
3,362,490	+				-0.4
3,362,490	+				-0.7
3,362,491	-				+0.9
3,362,491	-				-0.1
3,362,491	-				-1.1
3,362,491	-				-1.4
3,362,491	-				-1.9
3,362,491	-				+0.1
3,362,500	+				-0.3
3,362,500	+				-1.0
3,362,501	-				+0.6
3,362,501	-				+0.6
3,362,501	-				-1.7
3,362,508	+				-1.1
3,362,508	+				+0.1
3,362,508	+				-0.7
3,362,508	+				+0.1
3,362,508	+				-0.6
3,362,509	-				-0.7
3,362,509	-				-0.7
3,362,509	-				+1.1
3,362,509	-				-0.9
3,362,509	-				+0.1
3,362,509	-				+0.4
3,362,509	-				-0.6
3,362,554	+				-1.1
3,362,555	-				-0.4
3,362,600	+				+0.5
3,362,637	+				+0.9
3,362,638	-				-2.6
3,362,669	-				+0.7
3,362,669	-				-0.7
3,362,669	-				+1.3
3,362,680	-				-0.3
3,362,686	+				+0.5
3,362,726	+				-1.7
3,362,746	+				+0.5
3,362,755	+				+1.9
3,362,756	-				+1.0
3,362,772	+				+2.1
3,362,773	-				-0.7
3,362,778	+				-1.3
3,362,779	-				-1.3
3,362,787	-				-1.1
3,362,807	+				-0.4
3,362,808	-				-0.9
3,362,808	-				+1.2
3,362,809	+				+0.5
3,362,809	+				+0.9
3,362,809	+				+0.6
3,362,809	+				+1.3
3,362,810	-				+1.3
3,362,855	-				-0.4
3,362,890	+				-2.3
3,362,890	+				+0.9
3,362,890	+				+0.0
3,362,891	-				-1.0
3,362,893	+				+0.5
3,362,893	+				-1.9
3,362,894	-				+0.3
3,362,894	-				-2.1
3,362,894	-				+0.5
3,362,894	-				+1.1
3,362,896	+				-0.3
3,362,911	+				+0.3
3,362,911	+				-0.3
3,362,912	-				+0.4
3,362,912	-				-0.6
3,362,915	+				-1.4
3,362,916	-				+0.1
3,363,019	+		DZA65_RS15515	0.14	-1.3
3,363,019	+		DZA65_RS15515	0.14	+1.5
3,363,041	-		DZA65_RS15515	0.17	-0.3
3,363,143	+		DZA65_RS15515	0.31	-2.3
3,363,145	+		DZA65_RS15515	0.31	+0.9
3,363,145	+		DZA65_RS15515	0.31	+0.9
3,363,145	+		DZA65_RS15515	0.31	-1.7
3,363,145	+		DZA65_RS15515	0.31	+0.9
3,363,145	+		DZA65_RS15515	0.31	-2.1
3,363,145	+		DZA65_RS15515	0.31	-0.9
3,363,146	-		DZA65_RS15515	0.31	-1.0
3,363,146	-		DZA65_RS15515	0.31	+0.1
3,363,146	-				+0.1
3,363,146	-		DZA65_RS15515	0.31	+0.6
3,363,146	-		DZA65_RS15515	0.31	-4.1
3,363,146	-		DZA65_RS15515	0.31	-2.1
3,363,167	+		DZA65_RS15515	0.34	+2.7
3,363,229	+		DZA65_RS15515	0.42	+0.7
3,363,230	-		DZA65_RS15515	0.42	-1.1
3,363,238	+		DZA65_RS15515	0.43	+2.5
3,363,246	-		DZA65_RS15515	0.44	-0.7
3,363,250	+		DZA65_RS15515	0.45	+0.9
3,363,250	+		DZA65_RS15515	0.45	-1.4
3,363,251	-		DZA65_RS15515	0.45	+0.9
3,363,251	-		DZA65_RS15515	0.45	-0.7
3,363,251	-		DZA65_RS15515	0.45	-0.7
3,363,263	+		DZA65_RS15515	0.46	-3.2
3,363,350	+		DZA65_RS15515	0.58	+0.9
3,363,350	+		DZA65_RS15515	0.58	-1.4
3,363,350	+		DZA65_RS15515	0.58	-0.9
3,363,351	-		DZA65_RS15515	0.58	+0.9
3,363,351	-		DZA65_RS15515	0.58	-0.7
3,363,351	-		DZA65_RS15515	0.58	-1.8
3,363,351	-		DZA65_RS15515	0.58	+2.5
3,363,389	-		DZA65_RS15515	0.63	-0.8
3,363,389	-		DZA65_RS15515	0.63	-0.7
3,363,410	-		DZA65_RS15515	0.66	-0.9
3,363,484	+		DZA65_RS15515	0.75	-0.7
3,363,484	+		DZA65_RS15515	0.75	-1.6
3,363,485	-		DZA65_RS15515	0.75	-0.2
3,363,485	-		DZA65_RS15515	0.75	-1.7
3,363,485	-		DZA65_RS15515	0.75	-1.4