Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14115

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,028,572	+		DZA65_RS14110	0.52	-0.2
3,028,572	+		DZA65_RS14110	0.52	+0.1
3,028,572	+		DZA65_RS14110	0.52	+1.6
3,028,572	+		DZA65_RS14110	0.52	+3.3
3,028,573	-		DZA65_RS14110	0.52	-0.5
3,028,573	-		DZA65_RS14110	0.52	+0.2
3,028,573	-		DZA65_RS14110	0.52	-0.5
3,028,573	-		DZA65_RS14110	0.52	-0.2
3,028,652	+		DZA65_RS14110	0.58	-0.2
3,028,653	-		DZA65_RS14110	0.58	-0.6
3,028,653	-		DZA65_RS14110	0.58	+0.2
3,028,653	-		DZA65_RS14110	0.58	+0.1
3,028,761	-		DZA65_RS14110	0.65	-1.5
3,028,787	+		DZA65_RS14110	0.67	-0.3
3,028,787	+		DZA65_RS14110	0.67	+0.2
3,028,787	+		DZA65_RS14110	0.67	+0.8
3,028,788	-		DZA65_RS14110	0.67	+0.9
3,028,792	+		DZA65_RS14110	0.68	+0.2
3,028,793	-		DZA65_RS14110	0.68	+0.1
3,028,793	-		DZA65_RS14110	0.68	-2.0
3,028,808	+		DZA65_RS14110	0.69	-1.5
3,028,845	+		DZA65_RS14110	0.71	-2.0
3,028,845	+		DZA65_RS14110	0.71	-2.3
3,028,845	+		DZA65_RS14110	0.71	+0.2
3,028,845	+		DZA65_RS14110	0.71	-1.2
3,028,845	+		DZA65_RS14110	0.71	-0.2
3,028,845	+				+0.8
3,028,845	+		DZA65_RS14110	0.71	+1.1
3,028,845	+		DZA65_RS14110	0.71	-0.2
3,028,845	+		DZA65_RS14110	0.71	-0.1
3,028,846	-		DZA65_RS14110	0.71	+0.2
3,028,846	-		DZA65_RS14110	0.71	-0.2
3,028,846	-		DZA65_RS14110	0.71	-0.2
3,028,846	-		DZA65_RS14110	0.71	-0.5
3,028,846	-		DZA65_RS14110	0.71	+0.4
3,028,846	-		DZA65_RS14110	0.71	+1.6
3,028,846	-		DZA65_RS14110	0.71	-1.6
3,028,847	+		DZA65_RS14110	0.71	-1.9
3,028,848	-		DZA65_RS14110	0.71	+0.8
3,028,848	-		DZA65_RS14110	0.71	-2.5
3,028,848	-		DZA65_RS14110	0.71	-0.5
3,028,912	+		DZA65_RS14110	0.76	-1.0
3,028,926	+		DZA65_RS14110	0.77	+0.1
3,028,926	+		DZA65_RS14110	0.77	+0.6
3,028,926	+		DZA65_RS14110	0.77	-1.5
3,028,926	+		DZA65_RS14110	0.77	-0.9
3,028,926	+		DZA65_RS14110	0.77	-0.6
3,028,926	+		DZA65_RS14110	0.77	+0.8
3,028,926	+		DZA65_RS14110	0.77	-1.5
3,028,926	+		DZA65_RS14110	0.77	-0.5
3,028,927	-		DZA65_RS14110	0.77	-1.2
3,028,927	-		DZA65_RS14110	0.77	+1.6
3,028,927	-		DZA65_RS14110	0.77	-0.2
3,028,927	-		DZA65_RS14110	0.77	-0.2
3,028,927	-		DZA65_RS14110	0.77	+1.2
3,028,927	-		DZA65_RS14110	0.77	+1.6
3,028,955	-		DZA65_RS14110	0.79	-0.8
3,028,955	-		DZA65_RS14110	0.79	-1.0
3,028,955	-		DZA65_RS14110	0.79	+0.8
3,028,955	-		DZA65_RS14110	0.79	-0.8
3,028,955	-		DZA65_RS14110	0.79	-1.2
3,028,955	-		DZA65_RS14110	0.79	+0.8
3,028,955	-		DZA65_RS14110	0.79	+1.8
3,028,959	-		DZA65_RS14110	0.79	-0.5
3,028,959	-		DZA65_RS14110	0.79	-2.6
3,029,052	+		DZA65_RS14110	0.86	-0.3
3,029,052	+		DZA65_RS14110	0.86	-0.2
3,029,052	+		DZA65_RS14110	0.86	+0.6
3,029,052	+		DZA65_RS14110	0.86	-0.8
3,029,052	+		DZA65_RS14110	0.86	+1.2
3,029,052	+		DZA65_RS14110	0.86	+0.5
3,029,052	+		DZA65_RS14110	0.86	+0.3
3,029,052	+		DZA65_RS14110	0.86	+0.1
3,029,053	-		DZA65_RS14110	0.86	+0.8
3,029,053	-		DZA65_RS14110	0.86	+0.4
3,029,053	-		DZA65_RS14110	0.86	-1.1
3,029,053	-		DZA65_RS14110	0.86	-0.5
3,029,053	-		DZA65_RS14110	0.86	+0.5
3,029,053	-		DZA65_RS14110	0.86	-2.3
3,029,053	-		DZA65_RS14110	0.86	+0.0
3,029,053	-		DZA65_RS14110	0.86	-1.2
3,029,053	-		DZA65_RS14110	0.86	+0.9
3,029,053	-		DZA65_RS14110	0.86	+1.2
3,029,054	+		DZA65_RS14110	0.86	-1.3
3,029,054	+		DZA65_RS14110	0.86	+1.0
3,029,055	-		DZA65_RS14110	0.86	+1.4
3,029,055	-		DZA65_RS14110	0.86	-0.5
3,029,055	-		DZA65_RS14110	0.86	-0.2
3,029,055	-		DZA65_RS14110	0.86	-1.0
3,029,055	-		DZA65_RS14110	0.86	-1.2
3,029,055	-		DZA65_RS14110	0.86	+1.8
3,029,055	-		DZA65_RS14110	0.86	-1.8
3,029,055	-		DZA65_RS14110	0.86	+0.0
3,029,055	-		DZA65_RS14110	0.86	+0.8
3,029,055	-		DZA65_RS14110	0.86	-0.4
3,029,055	-		DZA65_RS14110	0.86	-0.4
3,029,057	+		DZA65_RS14110	0.86	+0.4
3,029,057	+		DZA65_RS14110	0.86	-1.5
3,029,057	+		DZA65_RS14110	0.86	+0.8
3,029,057	+		DZA65_RS14110	0.86	-0.4
3,029,057	+		DZA65_RS14110	0.86	+2.0
3,029,057	+		DZA65_RS14110	0.86	+0.8
3,029,057	+		DZA65_RS14110	0.86	-0.8
3,029,057	+		DZA65_RS14110	0.86	-0.4
3,029,057	+		DZA65_RS14110	0.86	+0.2
3,029,057	+		DZA65_RS14110	0.86	+0.8
3,029,057	+		DZA65_RS14110	0.86	+0.2
3,029,057	+		DZA65_RS14110	0.86	-1.5
3,029,058	-		DZA65_RS14110	0.86	-1.4
3,029,058	-		DZA65_RS14110	0.86	+0.8
3,029,058	-		DZA65_RS14110	0.86	-0.8
3,029,058	-		DZA65_RS14110	0.86	-2.0
3,029,058	-		DZA65_RS14110	0.86	-0.0
3,029,058	-		DZA65_RS14110	0.86	-0.4
3,029,058	-		DZA65_RS14110	0.86	-1.2
3,029,058	-		DZA65_RS14110	0.86	-0.8
3,029,058	-		DZA65_RS14110	0.86	-1.0
3,029,058	-		DZA65_RS14110	0.86	+0.1
3,029,058	-		DZA65_RS14110	0.86	-1.8
3,029,058	-		DZA65_RS14110	0.86	-1.5
3,029,058	-		DZA65_RS14110	0.86	-1.2
3,029,058	-		DZA65_RS14110	0.86	-0.2
3,029,078	+		DZA65_RS14110	0.87	-1.8
3,029,079	-		DZA65_RS14110	0.87	-2.0
3,029,079	-		DZA65_RS14110	0.87	+0.1
3,029,079	-		DZA65_RS14110	0.87	+0.3
3,029,079	-		DZA65_RS14110	0.87	-1.8
3,029,079	-		DZA65_RS14110	0.87	-0.8
3,029,079	-		DZA65_RS14110	0.87	+0.0
3,029,079	-		DZA65_RS14110	0.87	+0.4
3,029,079	-		DZA65_RS14110	0.87	-1.2
3,029,107	-		DZA65_RS14110	0.89	+0.6
3,029,107	-		DZA65_RS14110	0.89	+0.8
3,029,108	+		DZA65_RS14110	0.89	-0.3
3,029,108	+		DZA65_RS14110	0.89	-1.3
3,029,108	+		DZA65_RS14110	0.89	-0.8
3,029,108	+		DZA65_RS14110	0.89	+1.8
3,029,108	+		DZA65_RS14110	0.89	+0.4
3,029,109	-		DZA65_RS14110	0.90	+1.3
3,029,109	-		DZA65_RS14110	0.90	+1.2
3,029,109	-		DZA65_RS14110	0.90	-1.9
3,029,121	-				-0.1
3,029,230	-				-1.8
3,029,237	+				-0.2
3,029,244	-				-1.2
3,029,256	+				+1.4
3,029,282	+				+0.2
3,029,282	+				-1.1
3,029,283	-				-0.8
3,029,283	-				+0.2
3,029,323	+				-2.2
3,029,364	+				-0.2
3,029,364	+				+0.2
3,029,423	-				-0.8
3,029,439	+				+0.4
3,029,439	+				+0.8
3,029,439	+				+0.8
3,029,440	-				+1.0
3,029,440	-				+1.4
3,029,440	-				-0.3
3,029,440	-				+1.8
3,029,440	-				-0.3
3,029,440	-				-1.2
3,029,444	-				+1.8
3,029,444	-				+1.8
3,029,444	-				+2.6
3,029,444	-				+0.4
3,029,444	-				+0.4
3,029,471	-				+0.1
3,029,471	-				-0.4
3,029,471	-				+0.8
3,029,471	-				+0.6
3,029,473	+				+1.3
3,029,473	+				+1.1
3,029,474	-				-0.8
3,029,480	-				+0.1
3,029,480	-				+1.4
3,029,480	-				-0.8
3,029,482	-				-0.5
3,029,482	-				+0.8
3,029,482	-				+0.8
3,029,500	-				-0.2
3,029,503	+				-1.3
3,029,504	-				+0.2
3,029,504	-				+0.8
3,029,504	-				-0.2
3,029,529	+				+1.1
3,029,529	+				+0.2
3,029,529	+				-2.3
3,029,529	+				-1.5
3,029,533	-				-1.0
3,029,533	-				-0.2
3,029,562	+		DZA65_RS14115	0.12	-1.8
3,029,629	+		DZA65_RS14115	0.29	+0.9
3,029,679	-		DZA65_RS14115	0.43	+0.3
3,029,679	-		DZA65_RS14115	0.43	-0.2
3,029,687	+		DZA65_RS14115	0.45	+1.4
3,029,687	+		DZA65_RS14115	0.45	+0.2
3,029,688	-		DZA65_RS14115	0.45	-1.5
3,029,688	-		DZA65_RS14115	0.45	-0.0
3,029,688	-		DZA65_RS14115	0.45	+1.7
3,029,688	-		DZA65_RS14115	0.45	-0.9
3,029,688	-				+0.8
3,029,709	+		DZA65_RS14115	0.51	+0.2
3,029,730	+		DZA65_RS14115	0.56	-1.3
3,029,754	+		DZA65_RS14115	0.62	+0.0
3,029,754	+		DZA65_RS14115	0.62	-1.0
3,029,796	+		DZA65_RS14115	0.74	-1.6
3,029,832	+		DZA65_RS14115	0.83	+0.5
3,029,833	-		DZA65_RS14115	0.83	-1.3
3,029,833	-		DZA65_RS14115	0.83	-0.6
3,029,872	+				+0.2
3,029,877	+				+0.4
3,029,878	-				-0.3
3,029,892	-				+0.8
3,029,923	+				+0.0
3,029,923	+				-2.2
3,029,923	+				-0.8
3,029,924	-				+2.0
3,029,924	-				-1.2
3,029,924	-				-0.6
3,029,927	-				-1.2
3,029,944	-				+0.3
3,029,944	-				+0.8
3,029,967	+				+0.1
3,029,967	+				+0.1
3,029,967	+				+0.1
3,029,968	-				-1.2
3,029,968	-				-0.2
3,030,001	-				+1.3
3,030,001	-				+0.4
3,030,001	-				-0.8
3,030,003	-				+0.4
3,030,003	-				-1.8
3,030,003	-				-0.0
3,030,003	-				-0.4
3,030,003	-				-0.5
3,030,005	-				-0.4
3,030,014	-				-0.6
3,030,014	-				-0.6
3,030,184	-				+0.1
3,030,199	-				-0.4
3,030,207	-				+0.4
3,030,207	-				-2.5
3,030,207	-				-0.1
3,030,326	+				-0.8
3,030,327	-				-1.5
3,030,336	-				-0.2
3,030,337	+				+0.1
3,030,338	-				+0.3
3,030,338	-				+0.3
3,030,338	-				-0.6
3,030,338	-				+0.6
3,030,348	+				+0.8
3,030,349	-				-0.2
3,030,367	-				-1.3
3,030,368	+				-0.0
3,030,369	-				-1.5
3,030,369	-				-0.9
3,030,369	-				-0.2
3,030,371	+				-3.5
3,030,372	-				-0.8
3,030,476	+				-0.2
3,030,477	-				-1.8
3,030,477	-				-0.2
3,030,487	-				-0.8
3,030,491	+				-0.4
3,030,504	-				-0.0
3,030,504	-				+1.9
3,030,506	-				-0.5
3,030,511	-				-0.8
3,030,533	+				+1.4
3,030,582	+				+0.2
3,030,582	+				-0.5
3,030,635	+				+2.1
3,030,635	+				-1.2
3,030,635	+				-1.1
3,030,635	+				-1.0
3,030,636	-				+1.4
3,030,636	-				-1.1
3,030,794	+		DZA65_RS14120	0.12	-0.2
3,030,801	+		DZA65_RS14120	0.13	+0.8
3,030,802	-		DZA65_RS14120	0.13	-0.4
3,030,837	-		DZA65_RS14120	0.16	+1.0
3,030,837	-		DZA65_RS14120	0.16	+1.0
3,030,854	+		DZA65_RS14120	0.17	+0.2