Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14020

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,006,742	-				-3.2
3,006,742	-				-3.9
3,006,766	+				-0.2
3,006,783	+				-2.9
3,006,788	+				-2.6
3,006,788	+				+0.8
3,006,820	+				-2.8
3,006,820	+				-0.4
3,006,821	-				-3.7
3,006,821	-				-2.9
3,006,826	+				-2.0
3,006,826	+				-2.3
3,006,827	-				-1.0
3,006,827	-				-3.1
3,006,827	-				-3.5
3,006,839	+				-1.2
3,006,839	+				-1.5
3,006,839	+				-3.5
3,006,843	+				-0.0
3,006,843	+				-0.8
3,006,843	+				+0.8
3,006,843	+				+0.5
3,006,844	-				-1.8
3,006,844	-				-1.8
3,006,844	-				-2.6
3,006,844	-				-2.3
3,006,844	-				-1.2
3,006,844	-				-1.5
3,006,851	+				-0.1
3,006,851	+				-0.6
3,006,857	+				+0.3
3,006,857	+				+0.1
3,006,857	+				-0.5
3,006,865	+				-0.3
3,006,865	+				-1.3
3,006,865	+				-0.3
3,006,865	+				+1.7
3,006,871	+				+0.9
3,006,871	+				+2.4
3,006,910	+				-1.5
3,006,940	+				-1.5
3,006,940	+				-2.1
3,006,940	+				-1.2
3,006,940	+				-2.0
3,006,941	-				-1.5
3,006,941	-				-2.6
3,006,946	+				-0.8
3,006,956	-				-2.2
3,007,028	+		DZA65_RS14015	0.16	-0.8
3,007,035	-		DZA65_RS14015	0.17	-3.5
3,007,049	+		DZA65_RS14015	0.20	-1.3
3,007,050	-		DZA65_RS14015	0.20	-2.3
3,007,050	-		DZA65_RS14015	0.20	-1.2
3,007,055	+		DZA65_RS14015	0.20	-3.2
3,007,055	+		DZA65_RS14015	0.20	-1.2
3,007,215	+		DZA65_RS14015	0.44	-0.5
3,007,215	+		DZA65_RS14015	0.44	-0.5
3,007,215	+		DZA65_RS14015	0.44	-1.2
3,007,215	+		DZA65_RS14015	0.44	-2.6
3,007,215	+		DZA65_RS14015	0.44	-1.2
3,007,215	+		DZA65_RS14015	0.44	-2.6
3,007,215	+		DZA65_RS14015	0.44	-1.1
3,007,215	+		DZA65_RS14015	0.44	-2.5
3,007,215	+		DZA65_RS14015	0.44	-4.1
3,007,215	+		DZA65_RS14015	0.44	-1.6
3,007,215	+		DZA65_RS14015	0.44	-1.8
3,007,216	-		DZA65_RS14015	0.45	-2.3
3,007,216	-		DZA65_RS14015	0.45	-1.8
3,007,216	-		DZA65_RS14015	0.45	-3.6
3,007,216	-		DZA65_RS14015	0.45	-1.4
3,007,216	-		DZA65_RS14015	0.45	-4.9
3,007,216	-		DZA65_RS14015	0.45	-2.6
3,007,216	-		DZA65_RS14015	0.45	-2.6
3,007,216	-		DZA65_RS14015	0.45	-2.5
3,007,359	-		DZA65_RS14015	0.66	-2.3
3,007,376	+		DZA65_RS14015	0.68	-2.2
3,007,376	+		DZA65_RS14015	0.68	-3.3
3,007,376	+		DZA65_RS14015	0.68	-3.3
3,007,376	+		DZA65_RS14015	0.68	-3.4
3,007,376	+		DZA65_RS14015	0.68	-3.1
3,007,376	+		DZA65_RS14015	0.68	-3.4
3,007,376	+		DZA65_RS14015	0.68	-2.5
3,007,376	+		DZA65_RS14015	0.68	-2.5
3,007,376	+		DZA65_RS14015	0.68	-3.7
3,007,376	+		DZA65_RS14015	0.68	-1.8
3,007,377	-		DZA65_RS14015	0.69	-1.2
3,007,377	-		DZA65_RS14015	0.69	-2.0
3,007,377	-		DZA65_RS14015	0.69	-2.9
3,007,377	-		DZA65_RS14015	0.69	-1.2
3,007,377	-		DZA65_RS14015	0.69	+0.2
3,007,377	-		DZA65_RS14015	0.69	-1.5
3,007,377	-		DZA65_RS14015	0.69	-2.0
3,007,379	+		DZA65_RS14015	0.69	-3.4
3,007,379	+		DZA65_RS14015	0.69	-3.1
3,007,389	-		DZA65_RS14015	0.70	-1.8
3,007,389	-		DZA65_RS14015	0.70	-2.0
3,007,394	+		DZA65_RS14015	0.71	-2.9
3,007,457	+				-2.5
3,007,568	+				-1.8
3,007,568	+				-3.3
3,007,569	-				-1.2
3,007,597	+				-0.8
3,007,597	+				-2.6
3,007,597	+				-1.5
3,007,597	+				-0.2
3,007,623	+				-1.3
3,007,623	+				+2.0
3,007,623	+				-2.0
3,007,623	+				-0.6
3,007,623	+				+0.8
3,007,623	+				+0.5
3,007,623	+				-0.2
3,007,623	+				-0.2
3,007,627	+				-1.2
3,007,627	+				-0.8
3,007,627	+				+0.1
3,007,640	+				+2.1
3,007,688	+				+0.0
3,007,705	-				-1.8
3,007,993	+		DZA65_RS14020	0.87	+1.1
3,008,014	+				+0.3
3,008,034	+				-1.2
3,008,035	-				-4.1
3,008,049	-				-1.5
3,008,114	+		DZA65_RS14025	0.18	-2.3
3,008,114	+		DZA65_RS14025	0.18	-1.5
3,008,114	+		DZA65_RS14025	0.18	-1.2
3,008,115	-		DZA65_RS14025	0.18	-1.2
3,008,115	-		DZA65_RS14025	0.18	-4.7
3,008,115	-		DZA65_RS14025	0.18	-0.8
3,008,115	-		DZA65_RS14025	0.18	-2.2
3,008,161	-		DZA65_RS14025	0.29	+0.8
3,008,234	+		DZA65_RS14025	0.45	-2.0
3,008,251	+		DZA65_RS14025	0.49	-3.2
3,008,256	+		DZA65_RS14025	0.50	+0.8
3,008,256	+		DZA65_RS14025	0.50	-1.5
3,008,257	-		DZA65_RS14025	0.51	+1.4
3,008,264	+		DZA65_RS14025	0.52	-3.2
3,008,264	+		DZA65_RS14025	0.52	-1.5
3,008,264	+		DZA65_RS14025	0.52	-0.2
3,008,290	-		DZA65_RS14025	0.58	-2.2
3,008,290	-		DZA65_RS14025	0.58	-2.3
3,008,331	+		DZA65_RS14025	0.68	+0.8
3,008,331	+		DZA65_RS14025	0.68	-2.0
3,008,331	+		DZA65_RS14025	0.68	-3.4
3,008,332	-		DZA65_RS14025	0.68	-2.2
3,008,332	-				+0.8
3,008,332	-		DZA65_RS14025	0.68	-2.3
3,008,340	-		DZA65_RS14025	0.70	-1.8
3,008,436	+				-1.8
3,008,437	-				-1.3
3,008,467	-				-1.5
3,008,467	-				-0.8
3,008,494	+				-0.8
3,008,495	-				-2.0
3,008,518	+				-0.5
3,008,519	-				+0.1
3,008,530	+				+0.9
3,008,531	-				+1.4
3,008,531	-				-1.5
3,008,531	-				+2.4
3,008,531	-				-1.8
3,008,532	+				+0.0
3,008,532	+				+0.5
3,008,532	+				+0.5
3,008,532	+				-1.2
3,008,532	+				-0.8
3,008,533	-				-1.0
3,008,533	-				+1.0
3,008,533	-				-0.7
3,008,533	-				+1.2
3,008,533	-				+1.4
3,008,533	-				+0.8
3,008,536	+				-0.2
3,008,536	+				+1.6
3,008,536	+				-1.1
3,008,536	+				+0.6
3,008,537	-				-1.2
3,008,537	-				-0.8
3,008,537	-				-1.5
3,008,537	-				-1.2
3,008,539	+				-1.0
3,008,539	+				-1.8
3,008,540	-				+0.5
3,008,545	+				+0.1
3,008,545	+				+0.0
3,008,546	-				-0.6
3,008,546	-				-0.8
3,008,546	-				+1.0
3,008,547	+				+0.8
3,008,547	+				-2.0
3,008,547	+				+0.4
3,008,547	+				+0.8
3,008,547	+				-1.2
3,008,548	-				-2.2
3,008,548	-				-0.3
3,008,550	+				+1.1
3,008,550	+				-1.2
3,008,550	+				+1.4
3,008,550	+				+0.6
3,008,550	+				+2.1
3,008,550	+				+0.1
3,008,551	-				-0.3
3,008,551	-				+0.2
3,008,551	-				-0.6
3,008,551	-				+0.6
3,008,551	-				+0.8
3,008,551	-				-0.3
3,008,551	-				-0.2
3,008,554	+				-2.8
3,008,555	-				+0.8
3,008,555	-				-1.1
3,008,556	+				-0.8
3,008,557	-				-2.6
3,008,622	+				-2.0
3,008,622	+		DZA65_RS14030	0.17	+1.8
3,008,623	-		DZA65_RS14030	0.17	-0.8
3,008,623	-		DZA65_RS14030	0.17	-0.6
3,008,623	-		DZA65_RS14030	0.17	-1.5
3,008,623	-		DZA65_RS14030	0.17	+0.2
3,008,628	-		DZA65_RS14030	0.19	+1.4
3,008,636	-		DZA65_RS14030	0.21	-0.7
3,008,636	-		DZA65_RS14030	0.21	-0.2
3,008,671	-		DZA65_RS14030	0.29	-1.3
3,008,738	+		DZA65_RS14030	0.45	+0.1
3,008,763	+		DZA65_RS14030	0.51	-0.2
3,008,773	-		DZA65_RS14030	0.53	-0.2
3,008,777	+		DZA65_RS14030	0.54	+2.4
3,008,802	-		DZA65_RS14030	0.60	+0.8
3,008,856	+		DZA65_RS14030	0.73	+2.9
3,008,856	+		DZA65_RS14030	0.73	-1.7
3,008,857	-		DZA65_RS14030	0.73	-1.8
3,008,884	+		DZA65_RS14030	0.79	+0.6
3,008,884	+		DZA65_RS14030	0.79	+1.1
3,008,885	-		DZA65_RS14030	0.79	+0.0
3,008,885	-		DZA65_RS14030	0.79	-0.2
3,008,941	+				+0.9
3,008,942	-				-2.6
3,008,942	-				+1.1
3,008,942	-				-0.2