Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13195

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,826,112	-		DZA65_RS13190	0.88	-1.4
2,826,142	-				+0.5
2,826,148	+				-0.5
2,826,153	-				+0.5
2,826,172	+				+0.2
2,826,269	+				+1.7
2,826,349	+				+0.1
2,826,350	-				-1.8
2,826,350	-				+1.6
2,826,353	+				-1.0
2,826,353	+				-0.2
2,826,469	+				-1.5
2,826,469	+				+1.5
2,826,469	+				+1.4
2,826,469	+				+0.8
2,826,469	+				-0.6
2,826,469	+				+1.5
2,826,469	+				+0.6
2,826,469	+				+0.3
2,826,469	+				-0.8
2,826,470	-				+1.2
2,826,508	+				-1.8
2,826,509	-				+0.6
2,826,524	+				-0.5
2,826,524	+				+0.6
2,826,524	+				+3.1
2,826,525	-				-1.8
2,826,525	-				-0.1
2,826,525	-				+1.1
2,826,528	+				-1.5
2,826,528	+				+0.4
2,826,611	+				+0.2
2,826,697	-				-0.5
2,826,879	+		DZA65_RS13195	0.20	+0.2
2,826,916	-		DZA65_RS13195	0.39	-2.8
2,826,956	+		DZA65_RS13195	0.59	+0.3
2,826,956	+		DZA65_RS13195	0.59	-1.2
2,827,001	+		DZA65_RS13195	0.81	+0.8
2,827,001	+		DZA65_RS13195	0.81	-0.4
2,827,002	-		DZA65_RS13195	0.82	-1.5
2,827,009	+		DZA65_RS13195	0.85	-0.8
2,827,009	+		DZA65_RS13195	0.85	+0.8
2,827,009	+		DZA65_RS13195	0.85	+0.4
2,827,009	+		DZA65_RS13195	0.85	-1.2
2,827,010	-		DZA65_RS13195	0.86	-2.8
2,827,032	+				+1.5
2,827,032	+				+1.4
2,827,032	+				+0.8
2,827,032	+				-0.8
2,827,032	+				+0.8
2,827,032	+				+0.5
2,827,032	+				+1.0
2,827,033	-				-0.1
2,827,033	-				-0.2
2,827,033	-				+0.3
2,827,033	-				-0.8
2,827,033	-				-0.8
2,827,093	+				+0.2
2,827,094	-				-0.6
2,827,097	+				+1.1
2,827,098	-				-1.2
2,827,098	-				-0.2
2,827,098	-				-0.8
2,827,098	-				-2.2
2,827,098	-				-1.8
2,827,109	-		DZA65_RS13200	0.10	+0.5
2,827,155	+		DZA65_RS13200	0.16	+0.5
2,827,156	-		DZA65_RS13200	0.16	-1.2
2,827,164	+		DZA65_RS13200	0.18	-0.2
2,827,165	-		DZA65_RS13200	0.18	-0.2
2,827,165	-		DZA65_RS13200	0.18	-0.6
2,827,165	-		DZA65_RS13200	0.18	-1.5
2,827,199	+		DZA65_RS13200	0.22	-0.8
2,827,199	+		DZA65_RS13200	0.22	-2.4
2,827,199	+		DZA65_RS13200	0.22	+0.0
2,827,199	+		DZA65_RS13200	0.22	+0.8
2,827,199	+		DZA65_RS13200	0.22	-1.1
2,827,199	+		DZA65_RS13200	0.22	-0.1
2,827,199	+		DZA65_RS13200	0.22	-3.1
2,827,199	+		DZA65_RS13200	0.22	-0.2
2,827,200	-		DZA65_RS13200	0.22	-0.9
2,827,200	-		DZA65_RS13200	0.22	+1.2
2,827,200	-		DZA65_RS13200	0.22	-0.8
2,827,200	-		DZA65_RS13200	0.22	-0.4
2,827,200	-		DZA65_RS13200	0.22	+0.8
2,827,200	-		DZA65_RS13200	0.22	-1.1
2,827,200	-		DZA65_RS13200	0.22	+0.8
2,827,200	-		DZA65_RS13200	0.22	+0.6
2,827,200	-		DZA65_RS13200	0.22	-0.2
2,827,221	+		DZA65_RS13200	0.25	+0.8
2,827,221	+		DZA65_RS13200	0.25	-0.5
2,827,221	+		DZA65_RS13200	0.25	+1.9
2,827,221	+		DZA65_RS13200	0.25	-0.8
2,827,221	+				+2.5
2,827,222	-		DZA65_RS13200	0.25	+0.4
2,827,222	-		DZA65_RS13200	0.25	+1.4
2,827,246	+		DZA65_RS13200	0.29	+0.6
2,827,246	+		DZA65_RS13200	0.29	-2.5
2,827,247	-		DZA65_RS13200	0.29	+0.1
2,827,247	-		DZA65_RS13200	0.29	-0.8
2,827,247	-		DZA65_RS13200	0.29	-1.6
2,827,247	-		DZA65_RS13200	0.29	+1.1
2,827,247	-		DZA65_RS13200	0.29	-1.4
2,827,247	-		DZA65_RS13200	0.29	-1.5
2,827,254	+		DZA65_RS13200	0.30	-0.2
2,827,254	+		DZA65_RS13200	0.30	+1.3
2,827,254	+		DZA65_RS13200	0.30	-2.5
2,827,254	+		DZA65_RS13200	0.30	+1.0
2,827,254	+		DZA65_RS13200	0.30	+0.8
2,827,254	+		DZA65_RS13200	0.30	-0.2
2,827,254	+		DZA65_RS13200	0.30	+1.5
2,827,254	+		DZA65_RS13200	0.30	+0.7
2,827,254	+		DZA65_RS13200	0.30	+0.4
2,827,254	+		DZA65_RS13200	0.30	+0.5
2,827,254	+		DZA65_RS13200	0.30	+2.4
2,827,254	+		DZA65_RS13200	0.30	-0.5
2,827,254	+		DZA65_RS13200	0.30	-2.8
2,827,254	+		DZA65_RS13200	0.30	+1.2
2,827,254	+		DZA65_RS13200	0.30	+0.0
2,827,254	+		DZA65_RS13200	0.30	-1.2
2,827,255	-		DZA65_RS13200	0.30	-0.2
2,827,255	-		DZA65_RS13200	0.30	+0.8
2,827,255	-		DZA65_RS13200	0.30	+0.8
2,827,255	-		DZA65_RS13200	0.30	-1.8
2,827,255	-		DZA65_RS13200	0.30	-2.5
2,827,255	-		DZA65_RS13200	0.30	-0.2
2,827,255	-		DZA65_RS13200	0.30	-0.0
2,827,255	-		DZA65_RS13200	0.30	-0.5
2,827,255	-		DZA65_RS13200	0.30	-2.4
2,827,310	+		DZA65_RS13200	0.37	-0.8
2,827,352	+		DZA65_RS13200	0.43	-0.7
2,827,352	+		DZA65_RS13200	0.43	-0.2
2,827,352	+		DZA65_RS13200	0.43	+0.6
2,827,352	+		DZA65_RS13200	0.43	-2.4
2,827,352	+				-0.2
2,827,352	+		DZA65_RS13200	0.43	-1.1
2,827,353	-		DZA65_RS13200	0.43	-0.3
2,827,353	-		DZA65_RS13200	0.43	-2.0
2,827,372	+		DZA65_RS13200	0.45	-0.2
2,827,373	-		DZA65_RS13200	0.46	+0.5
2,827,373	-		DZA65_RS13200	0.46	+0.4
2,827,414	+		DZA65_RS13200	0.51	+0.3
2,827,429	+		DZA65_RS13200	0.53	+2.4
2,827,429	+		DZA65_RS13200	0.53	+1.1
2,827,610	-		DZA65_RS13200	0.77	-1.5
2,827,636	+		DZA65_RS13200	0.81	-0.6
2,827,636	+		DZA65_RS13200	0.81	-1.5
2,827,637	-		DZA65_RS13200	0.81	-0.8
2,827,662	+		DZA65_RS13200	0.84	-0.0
2,827,662	+		DZA65_RS13200	0.84	+0.2
2,827,662	+		DZA65_RS13200	0.84	+1.7
2,827,663	-		DZA65_RS13200	0.84	-0.3
2,827,720	-				+1.5
2,827,738	+				+0.8
2,827,739	-				-1.4
2,827,739	-				+0.8
2,827,873	+				+0.8
2,827,873	+				+0.8
2,827,878	+				-0.8
2,827,879	-				-0.5
2,827,879	-				-0.8
2,827,879	-				-1.5
2,827,879	-				-1.2
2,827,896	+				+0.3
2,827,991	-				-0.4
2,827,991	-				+1.2