Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11750

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,506,913	+		DZA65_RS11745	0.45	+0.5
2,506,913	+		DZA65_RS11745	0.45	+1.9
2,506,913	+		DZA65_RS11745	0.45	+0.5
2,506,913	+		DZA65_RS11745	0.45	+0.5
2,506,913	+		DZA65_RS11745	0.45	+0.1
2,506,914	-		DZA65_RS11745	0.46	+0.7
2,506,914	-		DZA65_RS11745	0.46	-1.2
2,506,914	-		DZA65_RS11745	0.46	+3.0
2,506,914	-		DZA65_RS11745	0.46	+0.7
2,506,914	-		DZA65_RS11745	0.46	+0.7
2,506,914	-		DZA65_RS11745	0.46	-0.9
2,506,914	-		DZA65_RS11745	0.46	-0.9
2,506,914	-		DZA65_RS11745	0.46	+0.7
2,506,928	+		DZA65_RS11745	0.47	+0.5
2,506,928	+		DZA65_RS11745	0.47	+0.1
2,506,928	+		DZA65_RS11745	0.47	-1.5
2,506,928	+		DZA65_RS11745	0.47	-0.5
2,506,928	+		DZA65_RS11745	0.47	+0.7
2,506,928	+		DZA65_RS11745	0.47	+0.7
2,506,928	+		DZA65_RS11745	0.47	+1.7
2,506,928	+		DZA65_RS11745	0.47	-0.1
2,506,929	-		DZA65_RS11745	0.47	-0.0
2,506,970	+		DZA65_RS11745	0.50	-0.3
2,506,971	-		DZA65_RS11745	0.50	+1.7
2,507,006	+		DZA65_RS11745	0.53	+1.5
2,507,006	+		DZA65_RS11745	0.53	-0.9
2,507,007	-		DZA65_RS11745	0.53	-1.9
2,507,048	+		DZA65_RS11745	0.56	-1.9
2,507,049	-		DZA65_RS11745	0.56	-0.6
2,507,051	+		DZA65_RS11745	0.56	-0.3
2,507,052	-		DZA65_RS11745	0.56	+0.4
2,507,078	+		DZA65_RS11745	0.58	-2.3
2,507,078	+		DZA65_RS11745	0.58	-2.1
2,507,078	+		DZA65_RS11745	0.58	-0.6
2,507,078	+		DZA65_RS11745	0.58	-0.7
2,507,078	+		DZA65_RS11745	0.58	+0.5
2,507,078	+		DZA65_RS11745	0.58	-0.9
2,507,079	-		DZA65_RS11745	0.58	+2.6
2,507,079	-		DZA65_RS11745	0.58	-0.0
2,507,079	-		DZA65_RS11745	0.58	-2.0
2,507,079	-		DZA65_RS11745	0.58	+1.7
2,507,120	+		DZA65_RS11745	0.61	-0.9
2,507,120	+		DZA65_RS11745	0.61	-0.8
2,507,120	+		DZA65_RS11745	0.61	-1.3
2,507,120	+		DZA65_RS11745	0.61	-0.7
2,507,120	+		DZA65_RS11745	0.61	-0.6
2,507,120	+		DZA65_RS11745	0.61	+0.7
2,507,120	+		DZA65_RS11745	0.61	+0.5
2,507,120	+		DZA65_RS11745	0.61	+0.1
2,507,121	-		DZA65_RS11745	0.62	+0.1
2,507,121	-		DZA65_RS11745	0.62	-1.9
2,507,121	-		DZA65_RS11745	0.62	-0.3
2,507,121	-		DZA65_RS11745	0.62	+0.1
2,507,121	-		DZA65_RS11745	0.62	-0.3
2,507,121	-		DZA65_RS11745	0.62	-0.8
2,507,121	-		DZA65_RS11745	0.62	+0.3
2,507,121	-		DZA65_RS11745	0.62	-1.1
2,507,147	+		DZA65_RS11745	0.64	+0.7
2,507,147	+		DZA65_RS11745	0.64	-0.3
2,507,148	-		DZA65_RS11745	0.64	-0.3
2,507,299	+				+0.1
2,507,299	+		DZA65_RS11745	0.75	-1.6
2,507,299	+		DZA65_RS11745	0.75	+1.1
2,507,299	+		DZA65_RS11745	0.75	+1.9
2,507,299	+		DZA65_RS11745	0.75	-0.9
2,507,299	+		DZA65_RS11745	0.75	+0.7
2,507,300	-		DZA65_RS11745	0.75	+0.4
2,507,300	-		DZA65_RS11745	0.75	-0.9
2,507,303	+		DZA65_RS11745	0.76	+0.7
2,507,303	+		DZA65_RS11745	0.76	+1.1
2,507,303	+		DZA65_RS11745	0.76	+0.6
2,507,303	+		DZA65_RS11745	0.76	-1.6
2,507,303	+		DZA65_RS11745	0.76	+1.7
2,507,303	+		DZA65_RS11745	0.76	+1.0
2,507,304	-		DZA65_RS11745	0.76	-0.3
2,507,304	-		DZA65_RS11745	0.76	-0.3
2,507,304	-		DZA65_RS11745	0.76	+0.9
2,507,304	-		DZA65_RS11745	0.76	+1.3
2,507,304	-		DZA65_RS11745	0.76	+0.5
2,507,525	+				+0.7
2,507,526	-				+0.7
2,507,528	-				-3.1
2,507,591	-				-1.2
2,507,635	-				-1.3
2,507,639	+				-0.7
2,507,790	+				+0.2
2,507,847	-				-1.7
2,507,848	+				-0.5
2,507,928	+				+0.7
2,507,966	-		DZA65_RS11750	0.14	-0.4
2,508,128	+		DZA65_RS11750	0.36	-2.7
2,508,128	+		DZA65_RS11750	0.36	-0.0
2,508,128	+		DZA65_RS11750	0.36	+0.4
2,508,198	-		DZA65_RS11750	0.46	+0.2
2,508,207	-		DZA65_RS11750	0.47	-0.6
2,508,258	-		DZA65_RS11750	0.55	+0.1
2,508,267	-		DZA65_RS11750	0.56	+0.5
2,508,267	-				-0.3
2,508,353	-		DZA65_RS11750	0.68	+0.6
2,508,437	-		DZA65_RS11750	0.79	-1.6
2,508,437	-		DZA65_RS11750	0.79	-0.6
2,508,440	+		DZA65_RS11750	0.80	-1.1
2,508,471	-				+2.1
2,508,638	+				-0.8
2,508,769	+				+0.7
2,508,829	-				+1.2
2,508,832	-				+0.1
2,508,843	-				+3.3
2,508,866	+				-1.3
2,508,866	+				+0.1
2,508,899	+				+0.8
2,508,915	+				-0.9
2,508,915	+				-0.9
2,508,916	-				-0.6
2,508,916	-				-2.3
2,508,916	-				+0.7
2,509,144	+		DZA65_RS11755	0.27	-0.1
2,509,207	+		DZA65_RS11755	0.33	-0.1
2,509,228	+		DZA65_RS11755	0.36	-1.1
2,509,228	+		DZA65_RS11755	0.36	+1.0
2,509,228	+		DZA65_RS11755	0.36	-0.3
2,509,228	+		DZA65_RS11755	0.36	+0.3
2,509,228	+		DZA65_RS11755	0.36	+1.7
2,509,228	+		DZA65_RS11755	0.36	+2.0
2,509,229	-		DZA65_RS11755	0.36	+0.1
2,509,229	-		DZA65_RS11755	0.36	-0.5
2,509,229	-		DZA65_RS11755	0.36	-0.3
2,509,229	-		DZA65_RS11755	0.36	+1.3
2,509,233	+		DZA65_RS11755	0.36	+1.3
2,509,233	+		DZA65_RS11755	0.36	+0.3
2,509,234	-		DZA65_RS11755	0.36	+0.0
2,509,234	-		DZA65_RS11755	0.36	+2.4
2,509,295	+		DZA65_RS11755	0.43	+1.0
2,509,295	+		DZA65_RS11755	0.43	+1.2
2,509,296	-		DZA65_RS11755	0.43	-0.1
2,509,296	-		DZA65_RS11755	0.43	-0.3
2,509,443	+		DZA65_RS11755	0.58	-0.3
2,509,443	+		DZA65_RS11755	0.58	-0.5
2,509,444	-		DZA65_RS11755	0.58	+0.7
2,509,444	-		DZA65_RS11755	0.58	+2.5
2,509,445	+		DZA65_RS11755	0.58	-0.5
2,509,445	+		DZA65_RS11755	0.58	+0.2
2,509,445	+		DZA65_RS11755	0.58	+0.1
2,509,445	+		DZA65_RS11755	0.58	-0.1
2,509,445	+		DZA65_RS11755	0.58	-1.5
2,509,445	+		DZA65_RS11755	0.58	-0.1
2,509,445	+				+1.5
2,509,445	+		DZA65_RS11755	0.58	-1.7
2,509,445	+		DZA65_RS11755	0.58	-0.1
2,509,445	+		DZA65_RS11755	0.58	+0.9
2,509,446	-		DZA65_RS11755	0.58	-0.7
2,509,446	-		DZA65_RS11755	0.58	+1.0
2,509,446	-		DZA65_RS11755	0.58	+0.3
2,509,446	-		DZA65_RS11755	0.58	+0.1
2,509,446	-		DZA65_RS11755	0.58	-1.6
2,509,446	-		DZA65_RS11755	0.58	-0.1
2,509,446	-		DZA65_RS11755	0.58	+0.5
2,509,446	-		DZA65_RS11755	0.58	-0.3
2,509,446	-		DZA65_RS11755	0.58	+0.3
2,509,446	-		DZA65_RS11755	0.58	-1.9
2,509,570	+		DZA65_RS11755	0.71	-0.2
2,509,571	-		DZA65_RS11755	0.71	+0.1