Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09050

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS09045 and DZA65_RS09050 overlap by 4 nucleotidesDZA65_RS09050 and DZA65_RS09055 are separated by 82 nucleotides DZA65_RS09045: DZA65_RS09045 - cardiolipin synthase ClsB, at 1,904,640 to 1,905,848 _RS09045 DZA65_RS09050: DZA65_RS09050 - endonuclease/exonuclease/phosphatase family protein, at 1,905,845 to 1,906,615 _RS09050 DZA65_RS09055: DZA65_RS09055 - ABC transporter permease, at 1,906,698 to 1,907,804 _RS09055 Position (kb) 1905 1906 1907Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1904.877 kb on - strand, within DZA65_RS09045at 1904.940 kb on - strand, within DZA65_RS09045at 1904.940 kb on - strand, within DZA65_RS09045at 1904.940 kb on - strand, within DZA65_RS09045at 1904.993 kb on - strand, within DZA65_RS09045at 1904.998 kb on + strand, within DZA65_RS09045at 1904.998 kb on + strand, within DZA65_RS09045at 1904.998 kb on + strand, within DZA65_RS09045at 1904.998 kb on + strand, within DZA65_RS09045at 1904.998 kb on + strand, within DZA65_RS09045at 1904.998 kb on + strand, within DZA65_RS09045at 1904.999 kb on - strand, within DZA65_RS09045at 1904.999 kb on - strand, within DZA65_RS09045at 1904.999 kb on - strand, within DZA65_RS09045at 1905.003 kb on - strand, within DZA65_RS09045at 1905.003 kb on - strand, within DZA65_RS09045at 1905.031 kb on + strand, within DZA65_RS09045at 1905.032 kb on - strand, within DZA65_RS09045at 1905.136 kb on - strand, within DZA65_RS09045at 1905.157 kb on + strand, within DZA65_RS09045at 1905.157 kb on + strand, within DZA65_RS09045at 1905.157 kb on + strand, within DZA65_RS09045at 1905.157 kb on + strand, within DZA65_RS09045at 1905.157 kb on + strand, within DZA65_RS09045at 1905.157 kb on + strand, within DZA65_RS09045at 1905.158 kb on - strand, within DZA65_RS09045at 1905.158 kb on - strand, within DZA65_RS09045at 1905.158 kb on - strand, within DZA65_RS09045at 1905.158 kb on - strand, within DZA65_RS09045at 1905.208 kb on + strand, within DZA65_RS09045at 1905.209 kb on - strand, within DZA65_RS09045at 1905.367 kb on + strand, within DZA65_RS09045at 1905.367 kb on + strand, within DZA65_RS09045at 1905.367 kb on + strand, within DZA65_RS09045at 1905.393 kb on + strand, within DZA65_RS09045at 1905.393 kb on + strand, within DZA65_RS09045at 1905.393 kb on + strand, within DZA65_RS09045at 1905.394 kb on - strand, within DZA65_RS09045at 1905.406 kb on + strand, within DZA65_RS09045at 1905.407 kb on - strand, within DZA65_RS09045at 1905.454 kb on + strand, within DZA65_RS09045at 1905.455 kb on - strand, within DZA65_RS09045at 1905.455 kb on - strand, within DZA65_RS09045at 1905.479 kb on + strand, within DZA65_RS09045at 1905.489 kb on + strand, within DZA65_RS09045at 1905.489 kb on + strand, within DZA65_RS09045at 1905.489 kb on + strand, within DZA65_RS09045at 1905.490 kb on - strand, within DZA65_RS09045at 1905.490 kb on - strand, within DZA65_RS09045at 1905.498 kb on + strand, within DZA65_RS09045at 1905.498 kb on + strand, within DZA65_RS09045at 1905.498 kb on + strand, within DZA65_RS09045at 1905.499 kb on - strand, within DZA65_RS09045at 1905.499 kb on - strand, within DZA65_RS09045at 1905.499 kb on - strand, within DZA65_RS09045at 1905.499 kb on - strand, within DZA65_RS09045at 1905.499 kb on - strand, within DZA65_RS09045at 1905.566 kb on - strand, within DZA65_RS09045at 1905.566 kb on - strand, within DZA65_RS09045at 1905.787 kb on + strandat 1905.788 kb on - strandat 1905.788 kb on - strandat 1905.788 kb on - strandat 1905.945 kb on + strand, within DZA65_RS09050at 1905.945 kb on + strand, within DZA65_RS09050at 1905.945 kb on + strand, within DZA65_RS09050at 1905.945 kb on + strand, within DZA65_RS09050at 1905.945 kb on + strand, within DZA65_RS09050at 1905.945 kb on + strand, within DZA65_RS09050at 1905.945 kb on + strand, within DZA65_RS09050at 1905.945 kb on + strand, within DZA65_RS09050at 1905.945 kb on + strand, within DZA65_RS09050at 1905.946 kb on - strand, within DZA65_RS09050at 1905.946 kb on - strand, within DZA65_RS09050at 1905.946 kb on - strand, within DZA65_RS09050at 1905.946 kb on - strand, within DZA65_RS09050at 1905.946 kb on - strand, within DZA65_RS09050at 1905.946 kb on - strand, within DZA65_RS09050at 1906.115 kb on + strand, within DZA65_RS09050at 1906.139 kb on + strand, within DZA65_RS09050at 1906.139 kb on + strand, within DZA65_RS09050at 1906.139 kb on + strand, within DZA65_RS09050at 1906.140 kb on - strand, within DZA65_RS09050at 1906.203 kb on + strand, within DZA65_RS09050at 1906.203 kb on + strand, within DZA65_RS09050at 1906.203 kb on + strand, within DZA65_RS09050at 1906.203 kb on + strand, within DZA65_RS09050at 1906.204 kb on - strand, within DZA65_RS09050at 1906.204 kb on - strand, within DZA65_RS09050at 1906.229 kb on + strand, within DZA65_RS09050at 1906.230 kb on - strand, within DZA65_RS09050at 1906.287 kb on + strand, within DZA65_RS09050at 1906.287 kb on + strand, within DZA65_RS09050at 1906.342 kb on - strand, within DZA65_RS09050at 1906.365 kb on + strand, within DZA65_RS09050at 1906.399 kb on - strand, within DZA65_RS09050at 1906.609 kb on + strandat 1906.609 kb on + strandat 1906.636 kb on - strandat 1906.650 kb on + strandat 1906.650 kb on + strandat 1906.650 kb on + strandat 1906.650 kb on + strandat 1906.651 kb on - strandat 1906.651 kb on - strandat 1906.727 kb on - strandat 1906.810 kb on + strand, within DZA65_RS09055at 1906.810 kb on + strand, within DZA65_RS09055at 1906.810 kb on + strand, within DZA65_RS09055at 1906.810 kb on + strand, within DZA65_RS09055at 1906.810 kb on + strand, within DZA65_RS09055at 1906.810 kb on + strand, within DZA65_RS09055at 1906.810 kb on + strand, within DZA65_RS09055at 1906.810 kb on + strand, within DZA65_RS09055at 1906.811 kb on - strand, within DZA65_RS09055at 1906.811 kb on - strand, within DZA65_RS09055at 1906.811 kb on - strand, within DZA65_RS09055at 1906.811 kb on - strand, within DZA65_RS09055at 1906.811 kb on - strand, within DZA65_RS09055at 1906.811 kb on - strand, within DZA65_RS09055at 1906.811 kb on - strand, within DZA65_RS09055at 1906.811 kb on - strand, within DZA65_RS09055at 1906.812 kb on + strand, within DZA65_RS09055at 1906.812 kb on + strand, within DZA65_RS09055at 1906.812 kb on + strand, within DZA65_RS09055at 1906.812 kb on + strand, within DZA65_RS09055at 1906.812 kb on + strand, within DZA65_RS09055at 1906.812 kb on + strand, within DZA65_RS09055at 1906.812 kb on + strand, within DZA65_RS09055at 1906.812 kb on + strand, within DZA65_RS09055at 1906.812 kb on + strand, within DZA65_RS09055at 1906.813 kb on - strand, within DZA65_RS09055at 1906.813 kb on - strand, within DZA65_RS09055at 1906.813 kb on - strand, within DZA65_RS09055at 1906.813 kb on - strand, within DZA65_RS09055at 1906.813 kb on - strand, within DZA65_RS09055at 1906.813 kb on - strand, within DZA65_RS09055at 1906.813 kb on - strand, within DZA65_RS09055at 1906.813 kb on - strand, within DZA65_RS09055at 1906.813 kb on - strand, within DZA65_RS09055at 1906.813 kb on - strand, within DZA65_RS09055at 1906.860 kb on + strand, within DZA65_RS09055at 1906.883 kb on + strand, within DZA65_RS09055at 1906.883 kb on + strandat 1906.883 kb on + strand, within DZA65_RS09055at 1906.884 kb on - strand, within DZA65_RS09055at 1906.903 kb on + strand, within DZA65_RS09055at 1906.928 kb on + strand, within DZA65_RS09055at 1906.942 kb on - strand, within DZA65_RS09055at 1907.017 kb on + strand, within DZA65_RS09055at 1907.017 kb on + strand, within DZA65_RS09055at 1907.018 kb on - strand, within DZA65_RS09055at 1907.025 kb on + strand, within DZA65_RS09055at 1907.025 kb on + strand, within DZA65_RS09055at 1907.026 kb on - strand, within DZA65_RS09055at 1907.026 kb on - strand, within DZA65_RS09055at 1907.026 kb on - strand, within DZA65_RS09055at 1907.035 kb on + strand, within DZA65_RS09055at 1907.099 kb on + strand, within DZA65_RS09055at 1907.099 kb on + strand, within DZA65_RS09055at 1907.293 kb on + strand, within DZA65_RS09055at 1907.294 kb on - strand, within DZA65_RS09055at 1907.309 kb on + strand, within DZA65_RS09055at 1907.310 kb on - strand, within DZA65_RS09055at 1907.310 kb on - strand, within DZA65_RS09055at 1907.311 kb on + strand, within DZA65_RS09055at 1907.311 kb on + strand, within DZA65_RS09055at 1907.311 kb on + strand, within DZA65_RS09055at 1907.311 kb on + strandat 1907.311 kb on + strand, within DZA65_RS09055at 1907.311 kb on + strand, within DZA65_RS09055at 1907.311 kb on + strand, within DZA65_RS09055at 1907.311 kb on + strand, within DZA65_RS09055at 1907.311 kb on + strand, within DZA65_RS09055at 1907.311 kb on + strand, within DZA65_RS09055at 1907.311 kb on + strand, within DZA65_RS09055at 1907.312 kb on - strand, within DZA65_RS09055at 1907.312 kb on - strand, within DZA65_RS09055at 1907.312 kb on - strand, within DZA65_RS09055at 1907.312 kb on - strand, within DZA65_RS09055at 1907.312 kb on - strand, within DZA65_RS09055at 1907.312 kb on - strand, within DZA65_RS09055at 1907.312 kb on - strand, within DZA65_RS09055at 1907.312 kb on - strand, within DZA65_RS09055at 1907.312 kb on - strand, within DZA65_RS09055at 1907.312 kb on - strand, within DZA65_RS09055at 1907.378 kb on - strand, within DZA65_RS09055at 1907.402 kb on - strand, within DZA65_RS09055at 1907.402 kb on - strand, within DZA65_RS09055

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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1,904,877 - DZA65_RS09045 0.20 -3.4
1,904,940 - DZA65_RS09045 0.25 -0.6
1,904,940 - DZA65_RS09045 0.25 -0.5
1,904,940 - DZA65_RS09045 0.25 -0.2
1,904,993 - DZA65_RS09045 0.29 +1.3
1,904,998 + DZA65_RS09045 0.30 +1.8
1,904,998 + DZA65_RS09045 0.30 -1.1
1,904,998 + DZA65_RS09045 0.30 -0.8
1,904,998 + DZA65_RS09045 0.30 +1.2
1,904,998 + DZA65_RS09045 0.30 +2.0
1,904,998 + DZA65_RS09045 0.30 -0.2
1,904,999 - DZA65_RS09045 0.30 +2.1
1,904,999 - DZA65_RS09045 0.30 -2.1
1,904,999 - DZA65_RS09045 0.30 +1.5
1,905,003 - DZA65_RS09045 0.30 +1.6
1,905,003 - DZA65_RS09045 0.30 -1.2
1,905,031 + DZA65_RS09045 0.32 +0.8
1,905,032 - DZA65_RS09045 0.32 +0.5
1,905,136 - DZA65_RS09045 0.41 -1.2
1,905,157 + DZA65_RS09045 0.43 -0.2
1,905,157 + DZA65_RS09045 0.43 +1.1
1,905,157 + DZA65_RS09045 0.43 -0.9
1,905,157 + DZA65_RS09045 0.43 -2.1
1,905,157 + DZA65_RS09045 0.43 +1.6
1,905,157 + DZA65_RS09045 0.43 -0.8
1,905,158 - DZA65_RS09045 0.43 -1.2
1,905,158 - DZA65_RS09045 0.43 -0.5
1,905,158 - DZA65_RS09045 0.43 -1.2
1,905,158 - DZA65_RS09045 0.43 -1.0
1,905,208 + DZA65_RS09045 0.47 -2.4
1,905,209 - DZA65_RS09045 0.47 -1.2
1,905,367 + DZA65_RS09045 0.60 -1.1
1,905,367 + DZA65_RS09045 0.60 -0.4
1,905,367 + DZA65_RS09045 0.60 -0.8
1,905,393 + DZA65_RS09045 0.62 -1.2
1,905,393 + DZA65_RS09045 0.62 -0.2
1,905,393 + DZA65_RS09045 0.62 +0.6
1,905,394 - DZA65_RS09045 0.62 -0.2
1,905,406 + DZA65_RS09045 0.63 -0.5
1,905,407 - DZA65_RS09045 0.63 +0.5
1,905,454 + DZA65_RS09045 0.67 -1.8
1,905,455 - DZA65_RS09045 0.67 -0.2
1,905,455 - DZA65_RS09045 0.67 -0.4
1,905,479 + DZA65_RS09045 0.69 -0.8
1,905,489 + DZA65_RS09045 0.70 +0.8
1,905,489 + DZA65_RS09045 0.70 -0.2
1,905,489 + DZA65_RS09045 0.70 -1.4
1,905,490 - DZA65_RS09045 0.70 -1.2
1,905,490 - DZA65_RS09045 0.70 +1.3
1,905,498 + DZA65_RS09045 0.71 +1.8
1,905,498 + DZA65_RS09045 0.71 -0.6
1,905,498 + DZA65_RS09045 0.71 -0.5
1,905,499 - DZA65_RS09045 0.71 +0.3
1,905,499 - DZA65_RS09045 0.71 -0.7
1,905,499 - DZA65_RS09045 0.71 +1.3
1,905,499 - DZA65_RS09045 0.71 +0.8
1,905,499 - DZA65_RS09045 0.71 +0.0
1,905,566 - DZA65_RS09045 0.77 +0.8
1,905,566 - DZA65_RS09045 0.77 -2.8
1,905,787 + -1.2
1,905,788 - +0.4
1,905,788 - +0.9
1,905,788 - -2.8
1,905,945 + DZA65_RS09050 0.13 +1.0
1,905,945 + DZA65_RS09050 0.13 -1.2
1,905,945 + DZA65_RS09050 0.13 -0.8
1,905,945 + DZA65_RS09050 0.13 +0.6
1,905,945 + DZA65_RS09050 0.13 -0.2
1,905,945 + DZA65_RS09050 0.13 -0.8
1,905,945 + DZA65_RS09050 0.13 -2.4
1,905,945 + DZA65_RS09050 0.13 -0.7
1,905,945 + DZA65_RS09050 0.13 +0.3
1,905,946 - DZA65_RS09050 0.13 +1.1
1,905,946 - DZA65_RS09050 0.13 +0.1
1,905,946 - DZA65_RS09050 0.13 -0.2
1,905,946 - DZA65_RS09050 0.13 -0.4
1,905,946 - DZA65_RS09050 0.13 -1.5
1,905,946 - DZA65_RS09050 0.13 +1.8
1,906,115 + DZA65_RS09050 0.35 +1.3
1,906,139 + DZA65_RS09050 0.38 +0.8
1,906,139 + DZA65_RS09050 0.38 -0.9
1,906,139 + DZA65_RS09050 0.38 +1.8
1,906,140 - DZA65_RS09050 0.38 -1.1
1,906,203 + DZA65_RS09050 0.46 -0.4
1,906,203 + DZA65_RS09050 0.46 -2.6
1,906,203 + DZA65_RS09050 0.46 -0.1
1,906,203 + DZA65_RS09050 0.46 -0.4
1,906,204 - DZA65_RS09050 0.47 +0.2
1,906,204 - DZA65_RS09050 0.47 -0.8
1,906,229 + DZA65_RS09050 0.50 -0.2
1,906,230 - DZA65_RS09050 0.50 +0.2
1,906,287 + DZA65_RS09050 0.57 +1.2
1,906,287 + DZA65_RS09050 0.57 -0.2
1,906,342 - DZA65_RS09050 0.64 -0.3
1,906,365 + DZA65_RS09050 0.67 +0.4
1,906,399 - DZA65_RS09050 0.72 -1.1
1,906,609 + -0.2
1,906,609 + +2.3
1,906,636 - -2.6
1,906,650 + +0.2
1,906,650 + +2.1
1,906,650 + -1.0
1,906,650 + -0.7
1,906,651 - -0.0
1,906,651 - -0.3
1,906,727 - -0.6
1,906,810 + DZA65_RS09055 0.10 +0.0
1,906,810 + DZA65_RS09055 0.10 +1.1
1,906,810 + DZA65_RS09055 0.10 +0.8
1,906,810 + DZA65_RS09055 0.10 -0.7
1,906,810 + DZA65_RS09055 0.10 +0.2
1,906,810 + DZA65_RS09055 0.10 -0.1
1,906,810 + DZA65_RS09055 0.10 +0.5
1,906,810 + DZA65_RS09055 0.10 +0.7
1,906,811 - DZA65_RS09055 0.10 -1.4
1,906,811 - DZA65_RS09055 0.10 -0.8
1,906,811 - DZA65_RS09055 0.10 +0.4
1,906,811 - DZA65_RS09055 0.10 +0.5
1,906,811 - DZA65_RS09055 0.10 +0.8
1,906,811 - DZA65_RS09055 0.10 -0.5
1,906,811 - DZA65_RS09055 0.10 -2.1
1,906,811 - DZA65_RS09055 0.10 +0.0
1,906,812 + DZA65_RS09055 0.10 +0.2
1,906,812 + DZA65_RS09055 0.10 -1.2
1,906,812 + DZA65_RS09055 0.10 +0.4
1,906,812 + DZA65_RS09055 0.10 -0.8
1,906,812 + DZA65_RS09055 0.10 -0.8
1,906,812 + DZA65_RS09055 0.10 +0.3
1,906,812 + DZA65_RS09055 0.10 -0.4
1,906,812 + DZA65_RS09055 0.10 +0.8
1,906,812 + DZA65_RS09055 0.10 -2.2
1,906,813 - DZA65_RS09055 0.10 +2.0
1,906,813 - DZA65_RS09055 0.10 -0.7
1,906,813 - DZA65_RS09055 0.10 -0.5
1,906,813 - DZA65_RS09055 0.10 +0.8
1,906,813 - DZA65_RS09055 0.10 -1.3
1,906,813 - DZA65_RS09055 0.10 +0.8
1,906,813 - DZA65_RS09055 0.10 -0.8
1,906,813 - DZA65_RS09055 0.10 +1.1
1,906,813 - DZA65_RS09055 0.10 +0.5
1,906,813 - DZA65_RS09055 0.10 +0.0
1,906,860 + DZA65_RS09055 0.15 -0.8
1,906,883 + DZA65_RS09055 0.17 +0.4
1,906,883 + -2.4
1,906,883 + DZA65_RS09055 0.17 +0.1
1,906,884 - DZA65_RS09055 0.17 -0.2
1,906,903 + DZA65_RS09055 0.19 -1.8
1,906,928 + DZA65_RS09055 0.21 +1.3
1,906,942 - DZA65_RS09055 0.22 +0.3
1,907,017 + DZA65_RS09055 0.29 +0.2
1,907,017 + DZA65_RS09055 0.29 -0.2
1,907,018 - DZA65_RS09055 0.29 -0.0
1,907,025 + DZA65_RS09055 0.30 -0.7
1,907,025 + DZA65_RS09055 0.30 +0.3
1,907,026 - DZA65_RS09055 0.30 +0.0
1,907,026 - DZA65_RS09055 0.30 +0.6
1,907,026 - DZA65_RS09055 0.30 -2.1
1,907,035 + DZA65_RS09055 0.30 +2.2
1,907,099 + DZA65_RS09055 0.36 +1.8
1,907,099 + DZA65_RS09055 0.36 -0.3
1,907,293 + DZA65_RS09055 0.54 -2.2
1,907,294 - DZA65_RS09055 0.54 -0.5
1,907,309 + DZA65_RS09055 0.55 -0.1
1,907,310 - DZA65_RS09055 0.55 +0.3
1,907,310 - DZA65_RS09055 0.55 +0.4
1,907,311 + DZA65_RS09055 0.55 +1.1
1,907,311 + DZA65_RS09055 0.55 +0.6
1,907,311 + DZA65_RS09055 0.55 +1.8
1,907,311 + +0.3
1,907,311 + DZA65_RS09055 0.55 +0.8
1,907,311 + DZA65_RS09055 0.55 -0.0
1,907,311 + DZA65_RS09055 0.55 -1.8
1,907,311 + DZA65_RS09055 0.55 +0.5
1,907,311 + DZA65_RS09055 0.55 +0.0
1,907,311 + DZA65_RS09055 0.55 -0.8
1,907,311 + DZA65_RS09055 0.55 -0.0
1,907,312 - DZA65_RS09055 0.55 +1.0
1,907,312 - DZA65_RS09055 0.55 +0.8
1,907,312 - DZA65_RS09055 0.55 -0.7
1,907,312 - DZA65_RS09055 0.55 +1.8
1,907,312 - DZA65_RS09055 0.55 -0.2
1,907,312 - DZA65_RS09055 0.55 -0.2
1,907,312 - DZA65_RS09055 0.55 -2.2
1,907,312 - DZA65_RS09055 0.55 -0.2
1,907,312 - DZA65_RS09055 0.55 +0.5
1,907,312 - DZA65_RS09055 0.55 +0.8
1,907,378 - DZA65_RS09055 0.61 -0.8
1,907,402 - DZA65_RS09055 0.64 -1.2
1,907,402 - DZA65_RS09055 0.64 +0.0

Or see this region's nucleotide sequence