Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08270

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS08265 and DZA65_RS08270 are separated by 15 nucleotidesDZA65_RS08270 and DZA65_RS08275 are separated by 2 nucleotidesDZA65_RS08275 and DZA65_RS08280 are separated by 13 nucleotides DZA65_RS08265: DZA65_RS08265 - ABC transporter permease, at 1,739,498 to 1,741,081 _RS08265 DZA65_RS08270: DZA65_RS08270 - biopolymer transporter ExbD, at 1,741,097 to 1,741,498 _RS08270 DZA65_RS08275: DZA65_RS08275 - MotA/TolQ/ExbB proton channel family protein, at 1,741,501 to 1,742,199 _RS08275 DZA65_RS08280: DZA65_RS08280 - energy transducer TonB, at 1,742,213 to 1,743,052 _RS08280 Position (kb) 1741 1742Strain fitness (log2 ratio) -2 -1 0 1 2at 1740.180 kb on + strand, within DZA65_RS08265at 1740.180 kb on + strand, within DZA65_RS08265at 1740.180 kb on + strand, within DZA65_RS08265at 1740.180 kb on + strand, within DZA65_RS08265at 1740.209 kb on + strand, within DZA65_RS08265at 1740.209 kb on + strand, within DZA65_RS08265at 1740.210 kb on - strand, within DZA65_RS08265at 1740.364 kb on + strand, within DZA65_RS08265at 1740.364 kb on + strand, within DZA65_RS08265at 1740.364 kb on + strand, within DZA65_RS08265at 1740.365 kb on - strand, within DZA65_RS08265at 1740.365 kb on - strandat 1740.365 kb on - strand, within DZA65_RS08265at 1740.365 kb on - strand, within DZA65_RS08265at 1740.365 kb on - strand, within DZA65_RS08265at 1740.365 kb on - strand, within DZA65_RS08265at 1740.365 kb on - strand, within DZA65_RS08265at 1740.365 kb on - strand, within DZA65_RS08265at 1740.365 kb on - strand, within DZA65_RS08265at 1740.365 kb on - strand, within DZA65_RS08265at 1740.388 kb on + strand, within DZA65_RS08265at 1740.389 kb on - strand, within DZA65_RS08265at 1740.389 kb on - strand, within DZA65_RS08265at 1740.418 kb on - strand, within DZA65_RS08265at 1740.418 kb on - strand, within DZA65_RS08265at 1740.418 kb on - strand, within DZA65_RS08265at 1740.455 kb on + strand, within DZA65_RS08265at 1740.455 kb on + strand, within DZA65_RS08265at 1740.456 kb on - strand, within DZA65_RS08265at 1740.456 kb on - strand, within DZA65_RS08265at 1740.456 kb on - strand, within DZA65_RS08265at 1740.456 kb on - strand, within DZA65_RS08265at 1740.507 kb on + strand, within DZA65_RS08265at 1740.508 kb on - strand, within DZA65_RS08265at 1740.582 kb on + strand, within DZA65_RS08265at 1740.583 kb on - strand, within DZA65_RS08265at 1740.583 kb on - strand, within DZA65_RS08265at 1740.583 kb on - strand, within DZA65_RS08265at 1740.656 kb on + strand, within DZA65_RS08265at 1740.657 kb on - strand, within DZA65_RS08265at 1740.657 kb on - strand, within DZA65_RS08265at 1740.754 kb on + strand, within DZA65_RS08265at 1740.754 kb on + strand, within DZA65_RS08265at 1740.755 kb on - strand, within DZA65_RS08265at 1740.951 kb on + strandat 1741.098 kb on + strandat 1741.098 kb on + strandat 1741.098 kb on + strandat 1741.098 kb on + strandat 1741.173 kb on + strand, within DZA65_RS08270at 1741.174 kb on - strand, within DZA65_RS08270at 1741.174 kb on - strand, within DZA65_RS08270at 1741.310 kb on + strandat 1741.314 kb on - strand, within DZA65_RS08270at 1741.314 kb on - strand, within DZA65_RS08270at 1741.406 kb on - strand, within DZA65_RS08270at 1741.466 kb on + strandat 1741.467 kb on - strandat 1741.467 kb on - strandat 1741.467 kb on - strandat 1741.502 kb on + strandat 1741.502 kb on + strandat 1741.502 kb on + strandat 1741.502 kb on + strandat 1741.502 kb on + strandat 1741.503 kb on - strandat 1741.503 kb on - strandat 1741.503 kb on - strandat 1741.503 kb on - strandat 1741.589 kb on + strand, within DZA65_RS08275at 1741.589 kb on + strand, within DZA65_RS08275at 1741.589 kb on + strand, within DZA65_RS08275at 1741.589 kb on + strand, within DZA65_RS08275at 1741.589 kb on + strand, within DZA65_RS08275at 1741.590 kb on - strand, within DZA65_RS08275at 1741.590 kb on - strand, within DZA65_RS08275at 1741.590 kb on - strand, within DZA65_RS08275at 1741.649 kb on + strand, within DZA65_RS08275at 1741.649 kb on + strand, within DZA65_RS08275at 1741.649 kb on + strand, within DZA65_RS08275at 1741.650 kb on - strand, within DZA65_RS08275at 1741.650 kb on - strand, within DZA65_RS08275at 1741.655 kb on + strand, within DZA65_RS08275at 1741.655 kb on + strand, within DZA65_RS08275at 1742.070 kb on + strand, within DZA65_RS08275at 1742.090 kb on + strand, within DZA65_RS08275at 1742.090 kb on + strand, within DZA65_RS08275at 1742.091 kb on - strand, within DZA65_RS08275at 1742.091 kb on - strand, within DZA65_RS08275at 1742.184 kb on + strandat 1742.185 kb on - strandat 1742.199 kb on + strandat 1742.199 kb on + strandat 1742.199 kb on + strandat 1742.200 kb on - strandat 1742.200 kb on - strandat 1742.203 kb on - strandat 1742.203 kb on - strandat 1742.203 kb on - strandat 1742.214 kb on + strandat 1742.214 kb on + strandat 1742.215 kb on - strandat 1742.215 kb on - strandat 1742.369 kb on + strand, within DZA65_RS08280at 1742.369 kb on + strand, within DZA65_RS08280at 1742.369 kb on + strand, within DZA65_RS08280at 1742.369 kb on + strand, within DZA65_RS08280at 1742.370 kb on - strand, within DZA65_RS08280at 1742.398 kb on + strand, within DZA65_RS08280at 1742.398 kb on + strand, within DZA65_RS08280at 1742.399 kb on - strand, within DZA65_RS08280at 1742.399 kb on - strand, within DZA65_RS08280at 1742.399 kb on - strand, within DZA65_RS08280at 1742.399 kb on - strand, within DZA65_RS08280at 1742.431 kb on + strand, within DZA65_RS08280at 1742.469 kb on + strand, within DZA65_RS08280at 1742.470 kb on - strand, within DZA65_RS08280

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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1,740,180 + DZA65_RS08265 0.43 -0.2
1,740,180 + DZA65_RS08265 0.43 +0.4
1,740,180 + DZA65_RS08265 0.43 -1.6
1,740,180 + DZA65_RS08265 0.43 -0.8
1,740,209 + DZA65_RS08265 0.45 -0.1
1,740,209 + DZA65_RS08265 0.45 -1.0
1,740,210 - DZA65_RS08265 0.45 -0.2
1,740,364 + DZA65_RS08265 0.55 -0.6
1,740,364 + DZA65_RS08265 0.55 -0.0
1,740,364 + DZA65_RS08265 0.55 -0.7
1,740,365 - DZA65_RS08265 0.55 +2.2
1,740,365 - -0.8
1,740,365 - DZA65_RS08265 0.55 +0.3
1,740,365 - DZA65_RS08265 0.55 -0.6
1,740,365 - DZA65_RS08265 0.55 -0.5
1,740,365 - DZA65_RS08265 0.55 +0.8
1,740,365 - DZA65_RS08265 0.55 +1.6
1,740,365 - DZA65_RS08265 0.55 -0.7
1,740,365 - DZA65_RS08265 0.55 +1.1
1,740,365 - DZA65_RS08265 0.55 -0.1
1,740,388 + DZA65_RS08265 0.56 -1.6
1,740,389 - DZA65_RS08265 0.56 -0.0
1,740,389 - DZA65_RS08265 0.56 +0.3
1,740,418 - DZA65_RS08265 0.58 -1.8
1,740,418 - DZA65_RS08265 0.58 +0.3
1,740,418 - DZA65_RS08265 0.58 -0.1
1,740,455 + DZA65_RS08265 0.60 -0.2
1,740,455 + DZA65_RS08265 0.60 -1.0
1,740,456 - DZA65_RS08265 0.60 +0.9
1,740,456 - DZA65_RS08265 0.60 +0.4
1,740,456 - DZA65_RS08265 0.60 +0.4
1,740,456 - DZA65_RS08265 0.60 +1.8
1,740,507 + DZA65_RS08265 0.64 +0.5
1,740,508 - DZA65_RS08265 0.64 +0.6
1,740,582 + DZA65_RS08265 0.68 -0.2
1,740,583 - DZA65_RS08265 0.68 -0.8
1,740,583 - DZA65_RS08265 0.68 +0.8
1,740,583 - DZA65_RS08265 0.68 +0.8
1,740,656 + DZA65_RS08265 0.73 +0.5
1,740,657 - DZA65_RS08265 0.73 -0.7
1,740,657 - DZA65_RS08265 0.73 +0.1
1,740,754 + DZA65_RS08265 0.79 +0.5
1,740,754 + DZA65_RS08265 0.79 +0.4
1,740,755 - DZA65_RS08265 0.79 -0.6
1,740,951 + -0.0
1,741,098 + +0.2
1,741,098 + -0.8
1,741,098 + -1.5
1,741,098 + +0.8
1,741,173 + DZA65_RS08270 0.19 -0.8
1,741,174 - DZA65_RS08270 0.19 -0.7
1,741,174 - DZA65_RS08270 0.19 +0.5
1,741,310 + +1.1
1,741,314 - DZA65_RS08270 0.54 -2.0
1,741,314 - DZA65_RS08270 0.54 +0.3
1,741,406 - DZA65_RS08270 0.77 -0.2
1,741,466 + -1.5
1,741,467 - +0.4
1,741,467 - -1.2
1,741,467 - -0.2
1,741,502 + -0.8
1,741,502 + +0.0
1,741,502 + -2.0
1,741,502 + -0.8
1,741,502 + -0.5
1,741,503 - +1.0
1,741,503 - -0.5
1,741,503 - -2.0
1,741,503 - +0.2
1,741,589 + DZA65_RS08275 0.13 -2.0
1,741,589 + DZA65_RS08275 0.13 +0.8
1,741,589 + DZA65_RS08275 0.13 -1.2
1,741,589 + DZA65_RS08275 0.13 -0.8
1,741,589 + DZA65_RS08275 0.13 -0.2
1,741,590 - DZA65_RS08275 0.13 +0.2
1,741,590 - DZA65_RS08275 0.13 +2.5
1,741,590 - DZA65_RS08275 0.13 +0.5
1,741,649 + DZA65_RS08275 0.21 -0.5
1,741,649 + DZA65_RS08275 0.21 +0.2
1,741,649 + DZA65_RS08275 0.21 -0.0
1,741,650 - DZA65_RS08275 0.21 -0.1
1,741,650 - DZA65_RS08275 0.21 +0.5
1,741,655 + DZA65_RS08275 0.22 -0.8
1,741,655 + DZA65_RS08275 0.22 -0.0
1,742,070 + DZA65_RS08275 0.81 -0.2
1,742,090 + DZA65_RS08275 0.84 +0.4
1,742,090 + DZA65_RS08275 0.84 +1.2
1,742,091 - DZA65_RS08275 0.84 -0.5
1,742,091 - DZA65_RS08275 0.84 +2.0
1,742,184 + +0.8
1,742,185 - +0.8
1,742,199 + +0.8
1,742,199 + -2.2
1,742,199 + -0.5
1,742,200 - -0.5
1,742,200 - -0.4
1,742,203 - +0.5
1,742,203 - +0.2
1,742,203 - -0.4
1,742,214 + -2.4
1,742,214 + +0.8
1,742,215 - +0.2
1,742,215 - -0.0
1,742,369 + DZA65_RS08280 0.19 +0.0
1,742,369 + DZA65_RS08280 0.19 -1.8
1,742,369 + DZA65_RS08280 0.19 +0.4
1,742,369 + DZA65_RS08280 0.19 +0.2
1,742,370 - DZA65_RS08280 0.19 +0.3
1,742,398 + DZA65_RS08280 0.22 +0.1
1,742,398 + DZA65_RS08280 0.22 +0.4
1,742,399 - DZA65_RS08280 0.22 +2.0
1,742,399 - DZA65_RS08280 0.22 -0.5
1,742,399 - DZA65_RS08280 0.22 +0.8
1,742,399 - DZA65_RS08280 0.22 +1.0
1,742,431 + DZA65_RS08280 0.26 +1.8
1,742,469 + DZA65_RS08280 0.30 -1.6
1,742,470 - DZA65_RS08280 0.31 -0.6

Or see this region's nucleotide sequence