Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03300

Experiment: Stem-Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS03290 and DZA65_RS03295 overlap by 7 nucleotidesDZA65_RS03295 and DZA65_RS03300 overlap by 14 nucleotidesDZA65_RS03300 and DZA65_RS03305 are separated by 425 nucleotides DZA65_RS03290: DZA65_RS03290 - SCP2 domain-containing protein, at 698,221 to 698,745 _RS03290 DZA65_RS03295: DZA65_RS03295 - N-acetyltransferase, at 698,739 to 699,242 _RS03295 DZA65_RS03300: DZA65_RS03300 - GIY-YIG nuclease family protein, at 699,229 to 699,531 _RS03300 DZA65_RS03305: DZA65_RS03305 - deoxyribose-phosphate aldolase, at 699,957 to 700,736 _RS03305 Position (kb) 699 700Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 698.234 kb on + strandat 698.267 kb on + strandat 698.267 kb on + strandat 698.275 kb on - strand, within DZA65_RS03290at 698.413 kb on - strand, within DZA65_RS03290at 698.467 kb on - strand, within DZA65_RS03290at 698.467 kb on - strand, within DZA65_RS03290at 698.467 kb on - strand, within DZA65_RS03290at 698.467 kb on - strand, within DZA65_RS03290at 698.544 kb on + strand, within DZA65_RS03290at 698.549 kb on + strand, within DZA65_RS03290at 698.549 kb on + strand, within DZA65_RS03290at 698.571 kb on + strand, within DZA65_RS03290at 698.572 kb on - strand, within DZA65_RS03290at 698.572 kb on - strand, within DZA65_RS03290at 698.599 kb on + strand, within DZA65_RS03290at 698.599 kb on + strand, within DZA65_RS03290at 698.600 kb on - strand, within DZA65_RS03290at 698.600 kb on - strand, within DZA65_RS03290at 698.637 kb on + strand, within DZA65_RS03290at 698.637 kb on + strand, within DZA65_RS03290at 698.637 kb on + strand, within DZA65_RS03290at 698.638 kb on - strand, within DZA65_RS03290at 698.638 kb on - strand, within DZA65_RS03290at 698.638 kb on - strand, within DZA65_RS03290at 698.696 kb on + strandat 698.736 kb on - strandat 698.827 kb on + strand, within DZA65_RS03295at 698.828 kb on - strand, within DZA65_RS03295at 698.828 kb on - strand, within DZA65_RS03295at 698.899 kb on + strand, within DZA65_RS03295at 698.899 kb on + strand, within DZA65_RS03295at 698.899 kb on + strand, within DZA65_RS03295at 698.899 kb on + strand, within DZA65_RS03295at 698.899 kb on + strand, within DZA65_RS03295at 698.899 kb on + strand, within DZA65_RS03295at 698.900 kb on - strand, within DZA65_RS03295at 698.900 kb on - strand, within DZA65_RS03295at 698.904 kb on + strand, within DZA65_RS03295at 698.905 kb on - strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strandat 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.018 kb on + strand, within DZA65_RS03295at 699.019 kb on - strand, within DZA65_RS03295at 699.019 kb on - strand, within DZA65_RS03295at 699.019 kb on - strand, within DZA65_RS03295at 699.019 kb on - strand, within DZA65_RS03295at 699.019 kb on - strand, within DZA65_RS03295at 699.064 kb on + strand, within DZA65_RS03295at 699.084 kb on + strand, within DZA65_RS03295at 699.084 kb on + strand, within DZA65_RS03295at 699.084 kb on + strand, within DZA65_RS03295at 699.084 kb on + strand, within DZA65_RS03295at 699.085 kb on - strand, within DZA65_RS03295at 699.085 kb on - strand, within DZA65_RS03295at 699.088 kb on - strand, within DZA65_RS03295at 699.088 kb on - strand, within DZA65_RS03295at 699.088 kb on - strand, within DZA65_RS03295at 699.088 kb on - strand, within DZA65_RS03295at 699.129 kb on + strand, within DZA65_RS03295at 699.129 kb on + strand, within DZA65_RS03295at 699.130 kb on - strand, within DZA65_RS03295at 699.130 kb on - strand, within DZA65_RS03295at 699.130 kb on - strand, within DZA65_RS03295at 699.168 kb on + strand, within DZA65_RS03295at 699.326 kb on + strand, within DZA65_RS03300at 699.327 kb on - strand, within DZA65_RS03300at 699.371 kb on + strand, within DZA65_RS03300at 699.371 kb on + strand, within DZA65_RS03300at 699.371 kb on + strand, within DZA65_RS03300at 699.371 kb on + strand, within DZA65_RS03300at 699.371 kb on + strand, within DZA65_RS03300at 699.371 kb on + strand, within DZA65_RS03300at 699.371 kb on + strand, within DZA65_RS03300at 699.371 kb on + strand, within DZA65_RS03300at 699.372 kb on - strand, within DZA65_RS03300at 699.372 kb on - strand, within DZA65_RS03300at 699.372 kb on - strand, within DZA65_RS03300at 699.372 kb on - strand, within DZA65_RS03300at 699.372 kb on - strand, within DZA65_RS03300at 699.372 kb on - strand, within DZA65_RS03300at 699.470 kb on + strand, within DZA65_RS03300at 699.470 kb on + strand, within DZA65_RS03300at 699.470 kb on + strand, within DZA65_RS03300at 699.471 kb on - strand, within DZA65_RS03300at 699.471 kb on - strand, within DZA65_RS03300at 699.501 kb on - strandat 699.561 kb on - strandat 699.565 kb on + strandat 699.565 kb on + strandat 699.565 kb on + strandat 699.566 kb on - strandat 699.573 kb on + strandat 699.573 kb on + strandat 699.574 kb on - strandat 699.574 kb on - strandat 699.641 kb on + strandat 699.646 kb on - strandat 699.695 kb on - strandat 699.712 kb on + strandat 699.723 kb on + strandat 699.727 kb on + strandat 699.783 kb on - strandat 699.783 kb on - strandat 699.820 kb on + strandat 699.821 kb on - strandat 699.830 kb on + strandat 699.830 kb on + strandat 699.831 kb on - strandat 699.831 kb on - strandat 699.840 kb on + strandat 699.841 kb on - strandat 699.841 kb on - strandat 699.841 kb on - strandat 699.841 kb on - strandat 699.841 kb on - strandat 699.848 kb on + strandat 699.848 kb on + strandat 699.862 kb on + strandat 699.871 kb on - strandat 699.871 kb on - strandat 699.890 kb on + strandat 699.890 kb on + strandat 699.891 kb on - strandat 699.891 kb on - strandat 699.891 kb on - strandat 699.891 kb on - strandat 699.906 kb on + strandat 699.906 kb on + strandat 699.906 kb on + strandat 699.906 kb on + strandat 699.907 kb on - strandat 699.912 kb on + strandat 699.912 kb on + strandat 699.912 kb on + strandat 699.912 kb on + strandat 699.913 kb on - strandat 699.913 kb on - strandat 699.956 kb on + strandat 699.956 kb on + strandat 699.956 kb on + strandat 699.956 kb on + strandat 699.956 kb on + strandat 699.957 kb on - strandat 699.957 kb on - strandat 699.957 kb on - strandat 699.967 kb on + strandat 699.967 kb on + strandat 699.968 kb on - strandat 699.968 kb on - strandat 700.006 kb on + strandat 700.006 kb on + strandat 700.065 kb on - strand, within DZA65_RS03305at 700.097 kb on + strand, within DZA65_RS03305at 700.097 kb on + strand, within DZA65_RS03305at 700.097 kb on + strand, within DZA65_RS03305at 700.098 kb on - strand, within DZA65_RS03305at 700.098 kb on - strand, within DZA65_RS03305at 700.098 kb on - strand, within DZA65_RS03305at 700.098 kb on - strand, within DZA65_RS03305at 700.098 kb on - strand, within DZA65_RS03305at 700.098 kb on - strand, within DZA65_RS03305at 700.098 kb on - strand, within DZA65_RS03305at 700.098 kb on - strand, within DZA65_RS03305at 700.101 kb on + strand, within DZA65_RS03305at 700.242 kb on + strand, within DZA65_RS03305at 700.242 kb on + strand, within DZA65_RS03305at 700.243 kb on - strand, within DZA65_RS03305

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
remove
698,234 + +0.8
698,267 + +0.2
698,267 + +0.3
698,275 - DZA65_RS03290 0.10 +0.5
698,413 - DZA65_RS03290 0.37 -0.8
698,467 - DZA65_RS03290 0.47 -2.5
698,467 - DZA65_RS03290 0.47 +0.5
698,467 - DZA65_RS03290 0.47 -0.0
698,467 - DZA65_RS03290 0.47 +1.0
698,544 + DZA65_RS03290 0.62 +1.5
698,549 + DZA65_RS03290 0.62 +0.9
698,549 + DZA65_RS03290 0.62 +0.5
698,571 + DZA65_RS03290 0.67 +0.4
698,572 - DZA65_RS03290 0.67 +0.7
698,572 - DZA65_RS03290 0.67 +1.4
698,599 + DZA65_RS03290 0.72 +1.4
698,599 + DZA65_RS03290 0.72 +0.4
698,600 - DZA65_RS03290 0.72 +0.1
698,600 - DZA65_RS03290 0.72 +0.2
698,637 + DZA65_RS03290 0.79 +1.6
698,637 + DZA65_RS03290 0.79 +2.4
698,637 + DZA65_RS03290 0.79 +1.2
698,638 - DZA65_RS03290 0.79 -0.9
698,638 - DZA65_RS03290 0.79 +0.1
698,638 - DZA65_RS03290 0.79 +0.1
698,696 + -1.3
698,736 - +2.1
698,827 + DZA65_RS03295 0.17 +1.1
698,828 - DZA65_RS03295 0.18 +2.3
698,828 - DZA65_RS03295 0.18 +0.1
698,899 + DZA65_RS03295 0.32 +0.6
698,899 + DZA65_RS03295 0.32 +0.4
698,899 + DZA65_RS03295 0.32 +0.7
698,899 + DZA65_RS03295 0.32 +0.9
698,899 + DZA65_RS03295 0.32 -1.7
698,899 + DZA65_RS03295 0.32 -0.0
698,900 - DZA65_RS03295 0.32 -1.1
698,900 - DZA65_RS03295 0.32 +0.6
698,904 + DZA65_RS03295 0.33 -2.4
698,905 - DZA65_RS03295 0.33 -0.4
699,018 + DZA65_RS03295 0.55 -0.4
699,018 + -0.7
699,018 + DZA65_RS03295 0.55 +1.1
699,018 + DZA65_RS03295 0.55 +0.3
699,018 + DZA65_RS03295 0.55 +1.5
699,018 + DZA65_RS03295 0.55 +1.0
699,018 + DZA65_RS03295 0.55 +1.6
699,018 + DZA65_RS03295 0.55 +0.8
699,018 + DZA65_RS03295 0.55 +1.7
699,018 + DZA65_RS03295 0.55 -0.3
699,018 + DZA65_RS03295 0.55 +1.0
699,018 + DZA65_RS03295 0.55 +0.4
699,018 + DZA65_RS03295 0.55 +1.4
699,018 + DZA65_RS03295 0.55 +0.1
699,018 + DZA65_RS03295 0.55 -0.9
699,018 + DZA65_RS03295 0.55 +0.3
699,019 - DZA65_RS03295 0.56 -0.2
699,019 - DZA65_RS03295 0.56 -0.0
699,019 - DZA65_RS03295 0.56 -1.5
699,019 - DZA65_RS03295 0.56 +3.6
699,019 - DZA65_RS03295 0.56 +2.5
699,064 + DZA65_RS03295 0.64 +0.9
699,084 + DZA65_RS03295 0.68 -0.7
699,084 + DZA65_RS03295 0.68 +0.5
699,084 + DZA65_RS03295 0.68 +1.1
699,084 + DZA65_RS03295 0.68 +0.3
699,085 - DZA65_RS03295 0.69 +0.7
699,085 - DZA65_RS03295 0.69 +0.1
699,088 - DZA65_RS03295 0.69 +0.4
699,088 - DZA65_RS03295 0.69 +2.6
699,088 - DZA65_RS03295 0.69 +0.8
699,088 - DZA65_RS03295 0.69 -0.9
699,129 + DZA65_RS03295 0.77 +0.6
699,129 + DZA65_RS03295 0.77 -0.3
699,130 - DZA65_RS03295 0.78 -0.5
699,130 - DZA65_RS03295 0.78 +2.1
699,130 - DZA65_RS03295 0.78 -2.8
699,168 + DZA65_RS03295 0.85 -0.3
699,326 + DZA65_RS03300 0.32 +0.5
699,327 - DZA65_RS03300 0.32 +1.2
699,371 + DZA65_RS03300 0.47 -0.9
699,371 + DZA65_RS03300 0.47 +0.3
699,371 + DZA65_RS03300 0.47 -1.5
699,371 + DZA65_RS03300 0.47 +0.3
699,371 + DZA65_RS03300 0.47 -1.3
699,371 + DZA65_RS03300 0.47 +0.1
699,371 + DZA65_RS03300 0.47 -0.3
699,371 + DZA65_RS03300 0.47 +0.5
699,372 - DZA65_RS03300 0.47 -0.4
699,372 - DZA65_RS03300 0.47 +0.3
699,372 - DZA65_RS03300 0.47 -0.6
699,372 - DZA65_RS03300 0.47 +0.8
699,372 - DZA65_RS03300 0.47 +1.7
699,372 - DZA65_RS03300 0.47 +0.5
699,470 + DZA65_RS03300 0.80 -0.8
699,470 + DZA65_RS03300 0.80 +0.1
699,470 + DZA65_RS03300 0.80 -0.0
699,471 - DZA65_RS03300 0.80 +0.6
699,471 - DZA65_RS03300 0.80 +0.3
699,501 - -0.5
699,561 - +0.1
699,565 + +0.6
699,565 + -0.5
699,565 + -0.3
699,566 - +0.7
699,573 + -0.3
699,573 + +0.1
699,574 - +0.4
699,574 - +0.7
699,641 + -0.5
699,646 - +0.3
699,695 - -1.1
699,712 + -1.3
699,723 + -0.5
699,727 + +0.1
699,783 - -1.7
699,783 - -1.0
699,820 + -0.2
699,821 - +0.3
699,830 + +0.2
699,830 + -2.3
699,831 - -0.1
699,831 - +0.2
699,840 + -1.5
699,841 - +0.1
699,841 - -0.5
699,841 - -0.7
699,841 - +1.3
699,841 - +0.9
699,848 + +0.3
699,848 + -0.6
699,862 + -0.3
699,871 - -0.7
699,871 - -1.0
699,890 + -1.3
699,890 + +0.1
699,891 - +1.1
699,891 - -0.9
699,891 - +1.2
699,891 - +1.1
699,906 + +1.1
699,906 + -1.1
699,906 + -0.0
699,906 + -0.9
699,907 - -0.5
699,912 + +0.1
699,912 + +0.1
699,912 + -0.5
699,912 + -0.5
699,913 - -2.4
699,913 - -1.3
699,956 + -0.5
699,956 + -1.9
699,956 + -1.1
699,956 + -0.9
699,956 + -0.4
699,957 - +4.2
699,957 - -0.8
699,957 - +0.8
699,967 + +2.3
699,967 + -1.2
699,968 - -1.0
699,968 - +1.1
700,006 + +0.6
700,006 + -1.7
700,065 - DZA65_RS03305 0.14 +1.6
700,097 + DZA65_RS03305 0.18 -0.3
700,097 + DZA65_RS03305 0.18 -1.0
700,097 + DZA65_RS03305 0.18 +1.3
700,098 - DZA65_RS03305 0.18 -0.3
700,098 - DZA65_RS03305 0.18 -0.9
700,098 - DZA65_RS03305 0.18 +0.5
700,098 - DZA65_RS03305 0.18 -0.3
700,098 - DZA65_RS03305 0.18 +1.1
700,098 - DZA65_RS03305 0.18 -0.1
700,098 - DZA65_RS03305 0.18 -0.3
700,098 - DZA65_RS03305 0.18 -1.5
700,101 + DZA65_RS03305 0.18 +2.1
700,242 + DZA65_RS03305 0.37 -0.2
700,242 + DZA65_RS03305 0.37 +0.9
700,243 - DZA65_RS03305 0.37 -0.2

Or see this region's nucleotide sequence