Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02175 and DZA65_RS02180 are separated by 11 nucleotides DZA65_RS02180 and DZA65_RS02185 are separated by 51 nucleotides DZA65_RS02185 and DZA65_RS02195 are separated by 297 nucleotides
DZA65_RS02175: DZA65_RS02175 - DUF4102 domain-containing protein, at 475,094 to 475,517
_RS02175
DZA65_RS02180: DZA65_RS02180 - IS5 family transposase, at 475,529 to 476,373
_RS02180
DZA65_RS02185: DZA65_RS02185 - DUF1778 domain-containing protein, at 476,425 to 476,646
_RS02185
DZA65_RS02195: DZA65_RS02195 - hypothetical protein, at 476,944 to 478,332
_RS02195
Position (kb) 476
477 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 475.457 kb on + strand, within DZA65_RS02175 at 475.457 kb on + strand, within DZA65_RS02175 at 475.474 kb on + strand, within DZA65_RS02175 at 475.474 kb on + strand, within DZA65_RS02175 at 475.499 kb on + strand at 475.500 kb on - strand at 475.500 kb on - strand at 475.531 kb on - strand at 475.535 kb on + strand at 475.536 kb on - strand at 475.536 kb on - strand at 475.574 kb on + strand at 475.574 kb on + strand at 475.574 kb on + strand at 475.575 kb on - strand at 475.575 kb on - strand at 475.575 kb on - strand at 475.579 kb on + strand at 475.580 kb on - strand at 475.580 kb on - strand at 475.587 kb on + strand at 475.732 kb on + strand, within DZA65_RS02180 at 475.751 kb on + strand, within DZA65_RS02180 at 475.751 kb on + strand, within DZA65_RS02180 at 475.761 kb on - strand, within DZA65_RS02180 at 475.770 kb on + strand, within DZA65_RS02180 at 475.771 kb on - strand, within DZA65_RS02180 at 476.251 kb on + strand, within DZA65_RS02180 at 476.282 kb on + strand, within DZA65_RS02180 at 476.282 kb on + strand, within DZA65_RS02180 at 476.376 kb on + strand at 476.423 kb on - strand at 476.426 kb on + strand at 476.427 kb on - strand at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.568 kb on + strand, within DZA65_RS02185 at 476.569 kb on - strand, within DZA65_RS02185 at 476.569 kb on - strand, within DZA65_RS02185 at 476.646 kb on + strand at 476.646 kb on + strand at 476.646 kb on + strand at 476.647 kb on - strand at 476.647 kb on - strand at 476.647 kb on - strand at 476.647 kb on - strand at 476.647 kb on - strand at 476.647 kb on - strand at 476.650 kb on - strand at 476.662 kb on + strand at 476.670 kb on - strand at 476.674 kb on - strand at 476.675 kb on + strand at 476.689 kb on + strand at 476.713 kb on + strand at 476.714 kb on - strand at 476.766 kb on + strand at 476.766 kb on + strand at 476.767 kb on - strand at 476.781 kb on + strand at 476.781 kb on + strand at 476.781 kb on + strand at 476.782 kb on - strand at 476.782 kb on - strand at 476.804 kb on + strand at 476.805 kb on - strand at 476.805 kb on - strand at 476.805 kb on - strand at 476.805 kb on - strand at 476.805 kb on - strand at 476.805 kb on - strand at 476.805 kb on - strand at 476.833 kb on + strand at 476.833 kb on + strand at 476.834 kb on - strand at 476.834 kb on - strand at 476.834 kb on - strand at 476.836 kb on + strand at 476.836 kb on + strand at 476.837 kb on - strand at 476.887 kb on + strand at 476.887 kb on + strand at 476.887 kb on + strand at 476.888 kb on - strand at 476.888 kb on - strand at 476.888 kb on - strand at 476.901 kb on + strand at 476.909 kb on + strand at 476.910 kb on - strand at 476.936 kb on + strand at 476.937 kb on - strand at 477.008 kb on + strand at 477.008 kb on + strand at 477.008 kb on + strand at 477.009 kb on - strand at 477.017 kb on + strand at 477.017 kb on + strand at 477.017 kb on + strand at 477.017 kb on + strand at 477.017 kb on + strand at 477.017 kb on + strand at 477.017 kb on + strand at 477.018 kb on - strand at 477.018 kb on - strand at 477.018 kb on - strand at 477.018 kb on - strand at 477.018 kb on - strand at 477.018 kb on - strand at 477.018 kb on - strand at 477.020 kb on + strand at 477.021 kb on - strand at 477.021 kb on - strand at 477.039 kb on + strand at 477.040 kb on - strand at 477.040 kb on - strand at 477.095 kb on + strand, within DZA65_RS02195 at 477.095 kb on + strand, within DZA65_RS02195 at 477.095 kb on + strand, within DZA65_RS02195 at 477.115 kb on + strand, within DZA65_RS02195 at 477.115 kb on + strand, within DZA65_RS02195 at 477.116 kb on - strand, within DZA65_RS02195 at 477.116 kb on - strand, within DZA65_RS02195 at 477.116 kb on - strand, within DZA65_RS02195 at 477.117 kb on + strand, within DZA65_RS02195 at 477.117 kb on + strand, within DZA65_RS02195 at 477.118 kb on - strand, within DZA65_RS02195 at 477.145 kb on + strand, within DZA65_RS02195 at 477.146 kb on - strand, within DZA65_RS02195 at 477.151 kb on + strand, within DZA65_RS02195 at 477.151 kb on + strand, within DZA65_RS02195 at 477.151 kb on + strand, within DZA65_RS02195 at 477.151 kb on + strand, within DZA65_RS02195 at 477.151 kb on + strand, within DZA65_RS02195 at 477.151 kb on + strand, within DZA65_RS02195 at 477.151 kb on + strand at 477.151 kb on + strand, within DZA65_RS02195 at 477.152 kb on - strand, within DZA65_RS02195 at 477.152 kb on - strand, within DZA65_RS02195 at 477.152 kb on - strand, within DZA65_RS02195 at 477.152 kb on - strand, within DZA65_RS02195 at 477.152 kb on - strand, within DZA65_RS02195 at 477.152 kb on - strand, within DZA65_RS02195 at 477.152 kb on - strand, within DZA65_RS02195 at 477.154 kb on + strand, within DZA65_RS02195 at 477.193 kb on - strand, within DZA65_RS02195 at 477.297 kb on + strand, within DZA65_RS02195 at 477.297 kb on + strand, within DZA65_RS02195 at 477.323 kb on - strand, within DZA65_RS02195 at 477.406 kb on + strand, within DZA65_RS02195 at 477.406 kb on + strand, within DZA65_RS02195 at 477.407 kb on - strand, within DZA65_RS02195 at 477.407 kb on - strand, within DZA65_RS02195 at 477.407 kb on - strand, within DZA65_RS02195 at 477.504 kb on - strand, within DZA65_RS02195 at 477.504 kb on - strand, within DZA65_RS02195 at 477.539 kb on + strand, within DZA65_RS02195 at 477.540 kb on - strand, within DZA65_RS02195
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 475,457 + DZA65_RS02175 0.86 -0.0 475,457 + DZA65_RS02175 0.86 -0.2 475,474 + DZA65_RS02175 0.90 -1.4 475,474 + DZA65_RS02175 0.90 -0.5 475,499 + -0.5 475,500 - -0.7 475,500 - +0.4 475,531 - -0.5 475,535 + -0.9 475,536 - +1.4 475,536 - -1.5 475,574 + +0.0 475,574 + +0.4 475,574 + -0.3 475,575 - +0.6 475,575 - -1.9 475,575 - +0.6 475,579 + -1.5 475,580 - +1.1 475,580 - -0.2 475,587 + -1.2 475,732 + DZA65_RS02180 0.24 +0.3 475,751 + DZA65_RS02180 0.26 +0.9 475,751 + DZA65_RS02180 0.26 +1.5 475,761 - DZA65_RS02180 0.27 -0.8 475,770 + DZA65_RS02180 0.29 -0.9 475,771 - DZA65_RS02180 0.29 +2.1 476,251 + DZA65_RS02180 0.85 -0.5 476,282 + DZA65_RS02180 0.89 -0.4 476,282 + DZA65_RS02180 0.89 -0.5 476,376 + -1.6 476,423 - +1.4 476,426 + +2.7 476,427 - +0.8 476,463 - DZA65_RS02185 0.17 +1.1 476,463 - DZA65_RS02185 0.17 -0.9 476,463 - DZA65_RS02185 0.17 +1.1 476,463 - DZA65_RS02185 0.17 -0.5 476,463 - DZA65_RS02185 0.17 -1.0 476,463 - DZA65_RS02185 0.17 +2.1 476,463 - DZA65_RS02185 0.17 +0.5 476,463 - DZA65_RS02185 0.17 -0.1 476,463 - DZA65_RS02185 0.17 +0.3 476,463 - DZA65_RS02185 0.17 +2.7 476,463 - DZA65_RS02185 0.17 +1.5 476,463 - DZA65_RS02185 0.17 +0.3 476,463 - DZA65_RS02185 0.17 -0.3 476,463 - DZA65_RS02185 0.17 -1.7 476,463 - DZA65_RS02185 0.17 +0.4 476,568 + DZA65_RS02185 0.64 +1.5 476,569 - DZA65_RS02185 0.65 +1.1 476,569 - DZA65_RS02185 0.65 +1.7 476,646 + +1.5 476,646 + +0.3 476,646 + -0.6 476,647 - +1.5 476,647 - -1.7 476,647 - -0.2 476,647 - -0.9 476,647 - +1.3 476,647 - +1.3 476,650 - -0.3 476,662 + -1.2 476,670 - +0.1 476,674 - -1.4 476,675 + +0.1 476,689 + +1.1 476,713 + -1.5 476,714 - -0.3 476,766 + -0.1 476,766 + -1.1 476,767 - -1.5 476,781 + +1.0 476,781 + +0.1 476,781 + -1.7 476,782 - -0.5 476,782 - +0.4 476,804 + -1.2 476,805 - -1.2 476,805 - -0.4 476,805 - +3.1 476,805 - +1.1 476,805 - -1.1 476,805 - -1.5 476,805 - +0.5 476,833 + -0.9 476,833 + -0.5 476,834 - +1.3 476,834 - -0.5 476,834 - +2.3 476,836 + -0.3 476,836 + +1.0 476,837 - -0.3 476,887 + +0.2 476,887 + +0.1 476,887 + -0.2 476,888 - +1.1 476,888 - -1.7 476,888 - +1.1 476,901 + +0.1 476,909 + -0.7 476,910 - -1.7 476,936 + +1.0 476,937 - -0.4 477,008 + +1.9 477,008 + -1.6 477,008 + -0.3 477,009 - +1.5 477,017 + -1.9 477,017 + -2.9 477,017 + -0.8 477,017 + -0.5 477,017 + -1.5 477,017 + -1.7 477,017 + -1.0 477,018 - +1.2 477,018 - -0.2 477,018 - -0.1 477,018 - -0.1 477,018 - +0.7 477,018 - -1.4 477,018 - -0.5 477,020 + +0.4 477,021 - -1.5 477,021 - -0.5 477,039 + +0.5 477,040 - +0.5 477,040 - +1.7 477,095 + DZA65_RS02195 0.11 -0.1 477,095 + DZA65_RS02195 0.11 -1.1 477,095 + DZA65_RS02195 0.11 +1.1 477,115 + DZA65_RS02195 0.12 +0.9 477,115 + DZA65_RS02195 0.12 +0.1 477,116 - DZA65_RS02195 0.12 +1.6 477,116 - DZA65_RS02195 0.12 -1.5 477,116 - DZA65_RS02195 0.12 +0.4 477,117 + DZA65_RS02195 0.12 +0.5 477,117 + DZA65_RS02195 0.12 +1.5 477,118 - DZA65_RS02195 0.13 -1.2 477,145 + DZA65_RS02195 0.14 +1.1 477,146 - DZA65_RS02195 0.15 -0.9 477,151 + DZA65_RS02195 0.15 -1.5 477,151 + DZA65_RS02195 0.15 -0.3 477,151 + DZA65_RS02195 0.15 +1.9 477,151 + DZA65_RS02195 0.15 +1.3 477,151 + DZA65_RS02195 0.15 +0.1 477,151 + DZA65_RS02195 0.15 +0.1 477,151 + +0.4 477,151 + DZA65_RS02195 0.15 -1.5 477,152 - DZA65_RS02195 0.15 +1.4 477,152 - DZA65_RS02195 0.15 +0.4 477,152 - DZA65_RS02195 0.15 +1.1 477,152 - DZA65_RS02195 0.15 +1.8 477,152 - DZA65_RS02195 0.15 +0.5 477,152 - DZA65_RS02195 0.15 -0.1 477,152 - DZA65_RS02195 0.15 +1.5 477,154 + DZA65_RS02195 0.15 -0.4 477,193 - DZA65_RS02195 0.18 -0.5 477,297 + DZA65_RS02195 0.25 +0.7 477,297 + DZA65_RS02195 0.25 -1.2 477,323 - DZA65_RS02195 0.27 +0.9 477,406 + DZA65_RS02195 0.33 -1.0 477,406 + DZA65_RS02195 0.33 -0.6 477,407 - DZA65_RS02195 0.33 +0.7 477,407 - DZA65_RS02195 0.33 +0.9 477,407 - DZA65_RS02195 0.33 +0.2 477,504 - DZA65_RS02195 0.40 -0.5 477,504 - DZA65_RS02195 0.40 -0.8 477,539 + DZA65_RS02195 0.43 +0.2 477,540 - DZA65_RS02195 0.43 -0.5
Or see this region's nucleotide sequence