Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02070 and DZA65_RS02075 are separated by 221 nucleotides DZA65_RS02075 and DZA65_RS02080 are separated by 219 nucleotides DZA65_RS02080 and DZA65_RS02085 are separated by 99 nucleotides
DZA65_RS02070: DZA65_RS02070 - LPS export ABC transporter permease LptG, at 457,265 to 458,335
_RS02070
DZA65_RS02075: DZA65_RS02075 - tRNA-Leu, at 458,557 to 458,641
_RS02075
DZA65_RS02080: DZA65_RS02080 - tyrosine-type recombinase/integrase, at 458,861 to 460,129
_RS02080
DZA65_RS02085: DZA65_RS02085 - dNTP triphosphohydrolase, at 460,229 to 461,446
_RS02085
Position (kb) 458
459
460
461 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 458.392 kb on - strand at 458.392 kb on - strand at 458.419 kb on + strand at 458.419 kb on + strand at 458.433 kb on - strand at 458.520 kb on + strand at 458.822 kb on - strand at 458.842 kb on + strand at 458.843 kb on - strand at 458.860 kb on + strand at 458.912 kb on + strand at 458.913 kb on - strand at 458.913 kb on - strand at 458.914 kb on + strand at 458.914 kb on + strand at 458.915 kb on - strand at 458.915 kb on - strand at 458.915 kb on - strand at 458.915 kb on - strand at 458.915 kb on - strand at 458.915 kb on - strand at 458.940 kb on - strand at 458.940 kb on - strand at 458.940 kb on - strand at 458.940 kb on - strand at 458.965 kb on + strand at 458.965 kb on + strand at 458.965 kb on + strand at 458.965 kb on + strand at 458.965 kb on + strand at 458.975 kb on + strand at 458.976 kb on - strand at 458.976 kb on - strand at 458.976 kb on - strand at 458.984 kb on + strand at 458.999 kb on - strand, within DZA65_RS02080 at 459.078 kb on + strand, within DZA65_RS02080 at 459.079 kb on - strand, within DZA65_RS02080 at 459.248 kb on - strand, within DZA65_RS02080 at 459.248 kb on - strand, within DZA65_RS02080 at 459.248 kb on - strand, within DZA65_RS02080 at 459.248 kb on - strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.251 kb on - strand, within DZA65_RS02080 at 459.251 kb on - strand, within DZA65_RS02080 at 459.251 kb on - strand at 459.251 kb on - strand, within DZA65_RS02080 at 459.251 kb on - strand, within DZA65_RS02080 at 459.491 kb on - strand, within DZA65_RS02080 at 459.525 kb on - strand, within DZA65_RS02080 at 459.525 kb on - strand, within DZA65_RS02080 at 459.525 kb on - strand, within DZA65_RS02080 at 459.555 kb on + strand, within DZA65_RS02080 at 459.555 kb on + strand, within DZA65_RS02080 at 459.556 kb on - strand, within DZA65_RS02080 at 459.563 kb on - strand, within DZA65_RS02080 at 459.563 kb on - strand, within DZA65_RS02080 at 459.563 kb on - strand, within DZA65_RS02080 at 459.563 kb on - strand, within DZA65_RS02080 at 459.578 kb on - strand, within DZA65_RS02080 at 459.594 kb on + strand, within DZA65_RS02080 at 459.594 kb on + strand, within DZA65_RS02080 at 459.594 kb on + strand, within DZA65_RS02080 at 459.595 kb on - strand, within DZA65_RS02080 at 459.595 kb on - strand, within DZA65_RS02080 at 459.626 kb on - strand, within DZA65_RS02080 at 459.626 kb on - strand, within DZA65_RS02080 at 459.664 kb on + strand, within DZA65_RS02080 at 459.665 kb on - strand, within DZA65_RS02080 at 459.726 kb on + strand, within DZA65_RS02080 at 459.741 kb on + strand, within DZA65_RS02080 at 459.741 kb on + strand, within DZA65_RS02080 at 459.742 kb on - strand, within DZA65_RS02080 at 459.760 kb on + strand, within DZA65_RS02080 at 459.863 kb on + strand, within DZA65_RS02080 at 459.863 kb on + strand, within DZA65_RS02080 at 459.864 kb on - strand, within DZA65_RS02080 at 459.882 kb on + strand, within DZA65_RS02080 at 459.882 kb on + strand, within DZA65_RS02080 at 459.882 kb on + strand, within DZA65_RS02080 at 459.882 kb on + strand, within DZA65_RS02080 at 459.882 kb on + strand, within DZA65_RS02080 at 459.883 kb on - strand, within DZA65_RS02080 at 459.883 kb on - strand, within DZA65_RS02080 at 459.883 kb on - strand, within DZA65_RS02080 at 459.901 kb on + strand, within DZA65_RS02080 at 459.904 kb on + strand, within DZA65_RS02080 at 459.905 kb on - strand, within DZA65_RS02080 at 459.921 kb on + strand, within DZA65_RS02080 at 459.921 kb on + strand, within DZA65_RS02080 at 459.921 kb on + strand, within DZA65_RS02080 at 459.922 kb on - strand, within DZA65_RS02080 at 459.922 kb on - strand, within DZA65_RS02080 at 459.954 kb on + strand, within DZA65_RS02080 at 459.955 kb on - strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.003 kb on + strand at 460.003 kb on + strand at 460.062 kb on - strand at 460.108 kb on - strand at 460.119 kb on + strand at 460.120 kb on - strand at 460.151 kb on - strand at 460.191 kb on - strand at 460.201 kb on + strand at 460.204 kb on + strand at 460.207 kb on + strand at 460.221 kb on + strand at 460.228 kb on + strand at 460.233 kb on - strand at 460.233 kb on - strand at 460.279 kb on - strand at 460.281 kb on + strand at 460.342 kb on + strand at 460.342 kb on + strand at 460.343 kb on - strand at 460.353 kb on - strand, within DZA65_RS02085 at 460.353 kb on - strand, within DZA65_RS02085 at 460.415 kb on - strand, within DZA65_RS02085 at 460.416 kb on + strand, within DZA65_RS02085 at 460.417 kb on - strand, within DZA65_RS02085 at 460.442 kb on - strand, within DZA65_RS02085 at 460.454 kb on - strand, within DZA65_RS02085 at 460.454 kb on - strand, within DZA65_RS02085 at 460.458 kb on + strand, within DZA65_RS02085 at 460.485 kb on + strand, within DZA65_RS02085 at 460.485 kb on + strand, within DZA65_RS02085 at 460.486 kb on - strand, within DZA65_RS02085 at 460.503 kb on + strand, within DZA65_RS02085 at 460.536 kb on + strand, within DZA65_RS02085 at 460.812 kb on + strand, within DZA65_RS02085 at 460.813 kb on - strand, within DZA65_RS02085 at 460.907 kb on + strand, within DZA65_RS02085 at 460.908 kb on - strand, within DZA65_RS02085 at 460.908 kb on - strand, within DZA65_RS02085 at 460.978 kb on - strand, within DZA65_RS02085 at 460.978 kb on - strand, within DZA65_RS02085 at 460.986 kb on + strand, within DZA65_RS02085 at 460.987 kb on - strand, within DZA65_RS02085 at 461.083 kb on - strand, within DZA65_RS02085 at 461.083 kb on - strand, within DZA65_RS02085 at 461.105 kb on - strand, within DZA65_RS02085 at 461.112 kb on + strand, within DZA65_RS02085
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 458,392 - +1.0 458,392 - -0.2 458,419 + -1.2 458,419 + -1.8 458,433 - -1.5 458,520 + -0.9 458,822 - +1.4 458,842 + +0.2 458,843 - -0.9 458,860 + +0.4 458,912 + +1.1 458,913 - -0.2 458,913 - +0.5 458,914 + -0.1 458,914 + -2.1 458,915 - -1.2 458,915 - -0.5 458,915 - +0.5 458,915 - +0.1 458,915 - +1.7 458,915 - -2.1 458,940 - -0.5 458,940 - +0.5 458,940 - +1.0 458,940 - +0.4 458,965 + +0.2 458,965 + +1.1 458,965 + -0.2 458,965 + -0.5 458,965 + -0.2 458,975 + -0.7 458,976 - +0.4 458,976 - +1.1 458,976 - +0.8 458,984 + -1.2 458,999 - DZA65_RS02080 0.11 +1.7 459,078 + DZA65_RS02080 0.17 +1.2 459,079 - DZA65_RS02080 0.17 -0.5 459,248 - DZA65_RS02080 0.30 -0.3 459,248 - DZA65_RS02080 0.30 -0.2 459,248 - DZA65_RS02080 0.30 +0.7 459,248 - DZA65_RS02080 0.30 -1.3 459,250 + DZA65_RS02080 0.31 +0.1 459,250 + DZA65_RS02080 0.31 +1.1 459,250 + DZA65_RS02080 0.31 +1.1 459,250 + DZA65_RS02080 0.31 +0.4 459,250 + DZA65_RS02080 0.31 -0.5 459,251 - DZA65_RS02080 0.31 -0.5 459,251 - DZA65_RS02080 0.31 -1.7 459,251 - -0.9 459,251 - DZA65_RS02080 0.31 +0.6 459,251 - DZA65_RS02080 0.31 +0.7 459,491 - DZA65_RS02080 0.50 +0.6 459,525 - DZA65_RS02080 0.52 -0.2 459,525 - DZA65_RS02080 0.52 +0.1 459,525 - DZA65_RS02080 0.52 -0.5 459,555 + DZA65_RS02080 0.55 +0.4 459,555 + DZA65_RS02080 0.55 +0.1 459,556 - DZA65_RS02080 0.55 +1.1 459,563 - DZA65_RS02080 0.55 +0.8 459,563 - DZA65_RS02080 0.55 +0.2 459,563 - DZA65_RS02080 0.55 +1.1 459,563 - DZA65_RS02080 0.55 +0.7 459,578 - DZA65_RS02080 0.57 +0.4 459,594 + DZA65_RS02080 0.58 -0.4 459,594 + DZA65_RS02080 0.58 -0.1 459,594 + DZA65_RS02080 0.58 -0.5 459,595 - DZA65_RS02080 0.58 -0.2 459,595 - DZA65_RS02080 0.58 +1.1 459,626 - DZA65_RS02080 0.60 -0.2 459,626 - DZA65_RS02080 0.60 -0.4 459,664 + DZA65_RS02080 0.63 -2.5 459,665 - DZA65_RS02080 0.63 -2.6 459,726 + DZA65_RS02080 0.68 -0.2 459,741 + DZA65_RS02080 0.69 +0.5 459,741 + DZA65_RS02080 0.69 -0.6 459,742 - DZA65_RS02080 0.69 +1.1 459,760 + DZA65_RS02080 0.71 -0.1 459,863 + DZA65_RS02080 0.79 +1.1 459,863 + DZA65_RS02080 0.79 -0.3 459,864 - DZA65_RS02080 0.79 -0.5 459,882 + DZA65_RS02080 0.80 +0.1 459,882 + DZA65_RS02080 0.80 +0.2 459,882 + DZA65_RS02080 0.80 +1.1 459,882 + DZA65_RS02080 0.80 -0.7 459,882 + DZA65_RS02080 0.80 +0.2 459,883 - DZA65_RS02080 0.81 +0.6 459,883 - DZA65_RS02080 0.81 +0.1 459,883 - DZA65_RS02080 0.81 +0.1 459,901 + DZA65_RS02080 0.82 -1.5 459,904 + DZA65_RS02080 0.82 -0.4 459,905 - DZA65_RS02080 0.82 +0.3 459,921 + DZA65_RS02080 0.84 +0.4 459,921 + DZA65_RS02080 0.84 -1.0 459,921 + DZA65_RS02080 0.84 +0.1 459,922 - DZA65_RS02080 0.84 -1.1 459,922 - DZA65_RS02080 0.84 +0.2 459,954 + DZA65_RS02080 0.86 -1.1 459,955 - DZA65_RS02080 0.86 -2.1 460,001 + DZA65_RS02080 0.90 -1.5 460,001 + DZA65_RS02080 0.90 -0.9 460,001 + DZA65_RS02080 0.90 -0.5 460,001 + DZA65_RS02080 0.90 +1.8 460,001 + DZA65_RS02080 0.90 -3.4 460,001 + DZA65_RS02080 0.90 -0.6 460,001 + DZA65_RS02080 0.90 -1.9 460,001 + DZA65_RS02080 0.90 -0.5 460,001 + DZA65_RS02080 0.90 +0.1 460,002 - DZA65_RS02080 0.90 -1.5 460,002 - DZA65_RS02080 0.90 -0.1 460,002 - DZA65_RS02080 0.90 -1.2 460,002 - DZA65_RS02080 0.90 -1.2 460,002 - DZA65_RS02080 0.90 +0.4 460,002 - DZA65_RS02080 0.90 -0.1 460,002 - DZA65_RS02080 0.90 +0.9 460,002 - DZA65_RS02080 0.90 -0.6 460,002 - DZA65_RS02080 0.90 +0.3 460,002 - DZA65_RS02080 0.90 -1.3 460,002 - DZA65_RS02080 0.90 +1.2 460,003 + +0.8 460,003 + +0.3 460,062 - +1.8 460,108 - +0.1 460,119 + -0.8 460,120 - -1.0 460,151 - -0.2 460,191 - +0.7 460,201 + +2.1 460,204 + -0.1 460,207 + +0.1 460,221 + -0.9 460,228 + +0.5 460,233 - -1.2 460,233 - -0.3 460,279 - -1.9 460,281 + +0.5 460,342 + -0.9 460,342 + +0.1 460,343 - -0.9 460,353 - DZA65_RS02085 0.10 +0.1 460,353 - DZA65_RS02085 0.10 -2.2 460,415 - DZA65_RS02085 0.15 +1.7 460,416 + DZA65_RS02085 0.15 +1.3 460,417 - DZA65_RS02085 0.15 -1.2 460,442 - DZA65_RS02085 0.17 +0.4 460,454 - DZA65_RS02085 0.18 -0.5 460,454 - DZA65_RS02085 0.18 +0.5 460,458 + DZA65_RS02085 0.19 +1.5 460,485 + DZA65_RS02085 0.21 +1.6 460,485 + DZA65_RS02085 0.21 -1.2 460,486 - DZA65_RS02085 0.21 -0.5 460,503 + DZA65_RS02085 0.22 -0.2 460,536 + DZA65_RS02085 0.25 -0.2 460,812 + DZA65_RS02085 0.48 +0.2 460,813 - DZA65_RS02085 0.48 -0.4 460,907 + DZA65_RS02085 0.56 +0.5 460,908 - DZA65_RS02085 0.56 -2.6 460,908 - DZA65_RS02085 0.56 -0.8 460,978 - DZA65_RS02085 0.61 +1.1 460,978 - DZA65_RS02085 0.61 +2.1 460,986 + DZA65_RS02085 0.62 +0.7 460,987 - DZA65_RS02085 0.62 +0.1 461,083 - DZA65_RS02085 0.70 +0.7 461,083 - DZA65_RS02085 0.70 -0.9 461,105 - DZA65_RS02085 0.72 +1.1 461,112 + DZA65_RS02085 0.72 -0.5
Or see this region's nucleotide sequence