Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00565

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00560 and DZA65_RS00565 are separated by 157 nucleotidesDZA65_RS00565 and DZA65_RS00570 are separated by 182 nucleotides DZA65_RS00560: DZA65_RS00560 - hypothetical protein, at 128,600 to 130,171 _RS00560 DZA65_RS00565: DZA65_RS00565 - hypothetical protein, at 130,329 to 131,759 _RS00565 DZA65_RS00570: DZA65_RS00570 - IS3 family transposase, at 131,942 to 133,050 _RS00570 Position (kb) 130 131 132Strain fitness (log2 ratio) -2 -1 0 1 2at 129.368 kb on - strand, within DZA65_RS00560at 129.414 kb on + strand, within DZA65_RS00560at 129.415 kb on - strand, within DZA65_RS00560at 129.525 kb on + strand, within DZA65_RS00560at 129.610 kb on + strand, within DZA65_RS00560at 129.746 kb on - strand, within DZA65_RS00560at 129.799 kb on - strand, within DZA65_RS00560at 129.856 kb on - strand, within DZA65_RS00560at 129.859 kb on - strand, within DZA65_RS00560at 129.921 kb on - strand, within DZA65_RS00560at 129.929 kb on + strand, within DZA65_RS00560at 129.962 kb on - strand, within DZA65_RS00560at 130.005 kb on - strand, within DZA65_RS00560at 130.009 kb on - strand, within DZA65_RS00560at 130.009 kb on - strand, within DZA65_RS00560at 130.009 kb on - strand, within DZA65_RS00560at 130.012 kb on + strand, within DZA65_RS00560at 130.036 kb on + strandat 130.036 kb on + strandat 130.037 kb on - strandat 130.055 kb on - strandat 130.065 kb on + strandat 130.065 kb on + strandat 130.066 kb on - strandat 130.138 kb on - strandat 130.138 kb on - strandat 130.181 kb on + strandat 130.182 kb on - strandat 130.211 kb on - strandat 130.211 kb on - strandat 130.238 kb on + strandat 130.239 kb on - strandat 130.239 kb on - strandat 130.239 kb on - strandat 130.270 kb on + strandat 130.329 kb on - strandat 130.343 kb on - strandat 130.358 kb on + strandat 130.368 kb on - strandat 130.369 kb on + strandat 130.369 kb on + strandat 130.528 kb on + strand, within DZA65_RS00565at 130.603 kb on + strand, within DZA65_RS00565at 130.603 kb on + strand, within DZA65_RS00565at 130.769 kb on + strand, within DZA65_RS00565at 130.792 kb on + strand, within DZA65_RS00565at 130.793 kb on - strand, within DZA65_RS00565at 130.796 kb on - strand, within DZA65_RS00565at 130.880 kb on + strand, within DZA65_RS00565at 130.880 kb on + strand, within DZA65_RS00565at 130.938 kb on - strand, within DZA65_RS00565at 131.038 kb on + strand, within DZA65_RS00565at 131.039 kb on - strand, within DZA65_RS00565at 131.148 kb on - strand, within DZA65_RS00565at 131.151 kb on + strand, within DZA65_RS00565at 131.184 kb on - strand, within DZA65_RS00565at 131.456 kb on - strand, within DZA65_RS00565at 131.497 kb on - strand, within DZA65_RS00565at 131.581 kb on + strand, within DZA65_RS00565at 131.582 kb on - strand, within DZA65_RS00565at 131.593 kb on + strand, within DZA65_RS00565at 131.598 kb on - strand, within DZA65_RS00565at 131.668 kb on + strandat 131.668 kb on + strandat 131.865 kb on + strandat 131.865 kb on + strandat 131.869 kb on + strandat 131.872 kb on + strandat 131.873 kb on - strandat 131.928 kb on - strandat 131.989 kb on - strandat 132.481 kb on + strand, within DZA65_RS00570at 132.485 kb on + strand, within DZA65_RS00570at 132.485 kb on + strand, within DZA65_RS00570

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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129,368 - DZA65_RS00560 0.49 +0.1
129,414 + DZA65_RS00560 0.52 +0.3
129,415 - DZA65_RS00560 0.52 +0.7
129,525 + DZA65_RS00560 0.59 -1.4
129,610 + DZA65_RS00560 0.64 -0.4
129,746 - DZA65_RS00560 0.73 -0.8
129,799 - DZA65_RS00560 0.76 -0.8
129,856 - DZA65_RS00560 0.80 -0.6
129,859 - DZA65_RS00560 0.80 -0.0
129,921 - DZA65_RS00560 0.84 -0.4
129,929 + DZA65_RS00560 0.85 +0.2
129,962 - DZA65_RS00560 0.87 +1.2
130,005 - DZA65_RS00560 0.89 +1.5
130,009 - DZA65_RS00560 0.90 +0.1
130,009 - DZA65_RS00560 0.90 -0.9
130,009 - DZA65_RS00560 0.90 -0.1
130,012 + DZA65_RS00560 0.90 -0.3
130,036 + +0.0
130,036 + +0.5
130,037 - -0.4
130,055 - +0.7
130,065 + -1.2
130,065 + +0.6
130,066 - -0.6
130,138 - +2.2
130,138 - -0.4
130,181 + +1.7
130,182 - +0.6
130,211 - -0.2
130,211 - -1.0
130,238 + +0.9
130,239 - +0.0
130,239 - +1.2
130,239 - -1.1
130,270 + +0.8
130,329 - +0.6
130,343 - +1.4
130,358 + -0.6
130,368 - -0.0
130,369 + +0.2
130,369 + +1.2
130,528 + DZA65_RS00565 0.14 +1.5
130,603 + DZA65_RS00565 0.19 +0.0
130,603 + DZA65_RS00565 0.19 +0.2
130,769 + DZA65_RS00565 0.31 -0.8
130,792 + DZA65_RS00565 0.32 +1.4
130,793 - DZA65_RS00565 0.32 +1.2
130,796 - DZA65_RS00565 0.33 -1.7
130,880 + DZA65_RS00565 0.39 -0.2
130,880 + DZA65_RS00565 0.39 -0.4
130,938 - DZA65_RS00565 0.43 +1.0
131,038 + DZA65_RS00565 0.50 +1.0
131,039 - DZA65_RS00565 0.50 +0.6
131,148 - DZA65_RS00565 0.57 -0.3
131,151 + DZA65_RS00565 0.57 -1.4
131,184 - DZA65_RS00565 0.60 +0.8
131,456 - DZA65_RS00565 0.79 +0.3
131,497 - DZA65_RS00565 0.82 +1.5
131,581 + DZA65_RS00565 0.87 -2.3
131,582 - DZA65_RS00565 0.88 +0.2
131,593 + DZA65_RS00565 0.88 +0.6
131,598 - DZA65_RS00565 0.89 +0.9
131,668 + -0.1
131,668 + -0.0
131,865 + +1.7
131,865 + -0.4
131,869 + -0.1
131,872 + +1.8
131,873 - +0.4
131,928 - +1.5
131,989 - +0.6
132,481 + DZA65_RS00570 0.49 +0.3
132,485 + DZA65_RS00570 0.49 +0.4
132,485 + DZA65_RS00570 0.49 +0.9

Or see this region's nucleotide sequence