Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20810

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
4,490,585	-		DZA65_RS20805	0.78	+0.6
4,490,987	-				-0.3
4,491,034	+				+0.3
4,491,034	+				-1.3
4,491,035	-				-2.2
4,491,035	-				-3.1
4,491,035	-				-0.5
4,491,035	-				-0.7
4,491,043	+				-0.2
4,491,043	+				-0.3
4,491,044	-				-0.3
4,491,044	-				-0.3
4,491,044	-				+0.2
4,491,044	-				+1.3
4,491,044	-				-0.4
4,491,044	-				-1.5
4,491,044	-				+0.5
4,491,044	-				-1.3
4,491,044	-				-0.1
4,491,045	+				-2.1
4,491,045	+				+0.3
4,491,045	+				-0.3
4,491,045	+				-0.7
4,491,045	+				+0.3
4,491,045	+				-1.5
4,491,045	+				-1.7
4,491,045	+				-1.3
4,491,045	+				-1.1
4,491,046	-				-1.8
4,491,046	-				-1.7
4,491,046	-				-1.7
4,491,046	-				-0.8
4,491,046	-				-0.3
4,491,046	-				-0.7
4,491,046	-				-0.1
4,491,046	-				-0.1
4,491,046	-				+1.3
4,491,046	-				+0.3
4,491,046	-				-1.1
4,491,046	-				-0.7
4,491,046	-				-0.4
4,491,084	-				+0.7
4,491,098	+				-0.3
4,491,099	-				-1.1
4,491,167	-				-0.2
4,491,171	+				+0.7
4,491,171	+				+0.3
4,491,171	+				-1.3
4,491,171	+				-0.1
4,491,171	+				-0.2
4,491,172	-				+0.3
4,491,172	-				+0.5
4,491,172	-				+0.9
4,491,172	-				+0.3
4,491,172	-				-1.5
4,491,172	-				-0.1
4,491,179	+				-0.0
4,491,180	-				+0.4
4,491,180	-				+0.3
4,491,222	+				+0.6
4,491,222	+				-0.3
4,491,222	+				-0.3
4,491,222	+				+1.3
4,491,222	+				-1.5
4,491,222	+				-0.5
4,491,223	-				+0.7
4,491,223	-				-0.7
4,491,223	-				-0.3
4,491,223	-				-0.5
4,491,223	-				+0.7
4,491,223	-				+1.3
4,491,223	-				-2.3
4,491,223	-				-0.7
4,491,223	-				-0.3
4,491,223	-				+1.3
4,491,271	+				+0.8
4,491,323	+		DZA65_RS20810	0.12	+0.9
4,491,323	+		DZA65_RS20810	0.12	+0.3
4,491,323	+		DZA65_RS20810	0.12	+0.7
4,491,323	+		DZA65_RS20810	0.12	-1.1
4,491,323	+		DZA65_RS20810	0.12	-0.3
4,491,324	-		DZA65_RS20810	0.12	+0.4
4,491,324	-		DZA65_RS20810	0.12	-0.3
4,491,324	-		DZA65_RS20810	0.12	-1.1
4,491,324	-		DZA65_RS20810	0.12	-1.2
4,491,367	+		DZA65_RS20810	0.18	-0.2
4,491,367	+		DZA65_RS20810	0.18	+0.3
4,491,367	+		DZA65_RS20810	0.18	+0.0
4,491,368	-		DZA65_RS20810	0.18	-1.3
4,491,368	-		DZA65_RS20810	0.18	+0.4
4,491,368	-		DZA65_RS20810	0.18	+0.3
4,491,410	+		DZA65_RS20810	0.24	+1.1
4,491,427	+		DZA65_RS20810	0.27	+0.5
4,491,441	-		DZA65_RS20810	0.29	+0.5
4,491,441	-		DZA65_RS20810	0.29	-1.0
4,491,453	-		DZA65_RS20810	0.30	+3.3
4,491,478	+		DZA65_RS20810	0.34	+0.3
4,491,478	+		DZA65_RS20810	0.34	+0.5
4,491,479	-		DZA65_RS20810	0.34	-1.5
4,491,482	+		DZA65_RS20810	0.34	-0.8
4,491,482	+				-0.7
4,491,483	-		DZA65_RS20810	0.35	-0.3
4,491,483	-		DZA65_RS20810	0.35	-3.0
4,491,530	-		DZA65_RS20810	0.41	-1.1
4,491,574	+		DZA65_RS20810	0.48	+2.6
4,491,574	+		DZA65_RS20810	0.48	-0.2
4,491,575	-		DZA65_RS20810	0.48	+1.3
4,491,575	-		DZA65_RS20810	0.48	+0.5
4,491,575	-		DZA65_RS20810	0.48	+1.3
4,491,580	-		DZA65_RS20810	0.48	-0.3
4,491,580	-		DZA65_RS20810	0.48	-0.6
4,491,618	+		DZA65_RS20810	0.54	+0.0
4,491,618	+		DZA65_RS20810	0.54	+1.3
4,491,618	+		DZA65_RS20810	0.54	+0.8
4,491,619	-		DZA65_RS20810	0.54	-0.3
4,491,651	+		DZA65_RS20810	0.58	-1.3
4,491,652	-		DZA65_RS20810	0.59	-0.3
4,491,652	-		DZA65_RS20810	0.59	+0.1
4,491,667	+		DZA65_RS20810	0.61	+0.5
4,491,667	+		DZA65_RS20810	0.61	+0.0
4,491,667	+		DZA65_RS20810	0.61	+0.5
4,491,667	+		DZA65_RS20810	0.61	+0.5
4,491,667	+		DZA65_RS20810	0.61	-0.1
4,491,667	+		DZA65_RS20810	0.61	-1.5
4,491,667	+		DZA65_RS20810	0.61	+0.5
4,491,667	+		DZA65_RS20810	0.61	+0.2
4,491,667	+		DZA65_RS20810	0.61	+0.3
4,491,667	+		DZA65_RS20810	0.61	-1.0
4,491,667	+		DZA65_RS20810	0.61	-1.2
4,491,668	-		DZA65_RS20810	0.61	-0.7
4,491,668	-		DZA65_RS20810	0.61	-0.3
4,491,668	-		DZA65_RS20810	0.61	+0.3
4,491,668	-		DZA65_RS20810	0.61	-0.9
4,491,668	-		DZA65_RS20810	0.61	-1.3
4,491,668	-		DZA65_RS20810	0.61	-0.3
4,491,668	-		DZA65_RS20810	0.61	+1.3
4,491,668	-		DZA65_RS20810	0.61	+0.3
4,491,668	-		DZA65_RS20810	0.61	+0.0
4,491,668	-		DZA65_RS20810	0.61	+0.0
4,491,671	+		DZA65_RS20810	0.61	-1.2
4,491,671	+		DZA65_RS20810	0.61	+0.3
4,491,671	+		DZA65_RS20810	0.61	+0.3
4,491,671	+		DZA65_RS20810	0.61	-2.2
4,491,671	+		DZA65_RS20810	0.61	+0.4
4,491,671	+		DZA65_RS20810	0.61	-0.7
4,491,671	+		DZA65_RS20810	0.61	-0.5
4,491,671	+		DZA65_RS20810	0.61	-0.1
4,491,671	+		DZA65_RS20810	0.61	-0.8
4,491,671	+		DZA65_RS20810	0.61	-0.3
4,491,671	+		DZA65_RS20810	0.61	-0.3
4,491,672	-		DZA65_RS20810	0.61	-1.0
4,491,672	-		DZA65_RS20810	0.61	-2.1
4,491,672	-		DZA65_RS20810	0.61	-1.1
4,491,672	-		DZA65_RS20810	0.61	+0.1
4,491,672	-		DZA65_RS20810	0.61	-0.3
4,491,672	-		DZA65_RS20810	0.61	-0.2
4,491,672	-		DZA65_RS20810	0.61	-0.9
4,491,672	-		DZA65_RS20810	0.61	-0.3
4,491,672	-		DZA65_RS20810	0.61	+0.8
4,491,672	-		DZA65_RS20810	0.61	-2.2
4,491,672	-		DZA65_RS20810	0.61	-1.4
4,491,672	-		DZA65_RS20810	0.61	-0.1
4,491,672	-		DZA65_RS20810	0.61	+0.3
4,491,731	-		DZA65_RS20810	0.70	+0.5
4,491,742	+		DZA65_RS20810	0.71	+0.2
4,491,771	+		DZA65_RS20810	0.75	-0.4
4,491,803	+		DZA65_RS20810	0.80	-0.2
4,491,881	+				+0.8
4,491,935	+				+1.5
4,491,935	+				+0.3
4,491,935	+				-1.1
4,491,935	+				+0.7
4,491,935	+				+0.0
4,491,935	+				-1.1
4,491,935	+				-1.7
4,491,936	-				-0.7
4,491,936	-				-0.0
4,491,936	-				+1.3
4,491,936	-				-2.3
4,491,936	-				-0.3
4,491,936	-				-2.0
4,491,936	-				+1.3
4,491,936	-				+0.8
4,491,936	-				+0.6
4,491,936	-				-0.1
4,492,012	+		DZA65_RS20815	0.17	+0.0
4,492,058	+		DZA65_RS20815	0.29	+0.1
4,492,058	+		DZA65_RS20815	0.29	-1.2
4,492,058	+		DZA65_RS20815	0.29	-0.6
4,492,058	+		DZA65_RS20815	0.29	-0.2
4,492,058	+		DZA65_RS20815	0.29	+0.0
4,492,058	+		DZA65_RS20815	0.29	+0.7
4,492,058	+		DZA65_RS20815	0.29	+2.6
4,492,058	+		DZA65_RS20815	0.29	+1.3
4,492,058	+		DZA65_RS20815	0.29	-1.7
4,492,058	+		DZA65_RS20815	0.29	+0.3
4,492,058	+		DZA65_RS20815	0.29	-0.3
4,492,059	-		DZA65_RS20815	0.29	-0.3
4,492,059	-		DZA65_RS20815	0.29	-1.6
4,492,059	-		DZA65_RS20815	0.29	-0.5
4,492,059	-		DZA65_RS20815	0.29	+0.0
4,492,059	-		DZA65_RS20815	0.29	-0.7
4,492,059	-		DZA65_RS20815	0.29	-0.3
4,492,059	-		DZA65_RS20815	0.29	+2.3
4,492,059	-		DZA65_RS20815	0.29	-1.7
4,492,063	+		DZA65_RS20815	0.30	+1.7
4,492,063	+		DZA65_RS20815	0.30	-1.5
4,492,063	+		DZA65_RS20815	0.30	-1.1
4,492,063	+		DZA65_RS20815	0.30	-0.9
4,492,063	+		DZA65_RS20815	0.30	+0.3
4,492,063	+		DZA65_RS20815	0.30	+2.3
4,492,063	+		DZA65_RS20815	0.30	+2.3
4,492,063	+		DZA65_RS20815	0.30	-1.5
4,492,063	+		DZA65_RS20815	0.30	-1.2
4,492,063	+		DZA65_RS20815	0.30	-0.7
4,492,064	-		DZA65_RS20815	0.30	+0.3
4,492,064	-		DZA65_RS20815	0.30	+2.7
4,492,064	-		DZA65_RS20815	0.30	+1.5
4,492,064	-		DZA65_RS20815	0.30	-3.5
4,492,081	-		DZA65_RS20815	0.34	-0.3
4,492,143	+		DZA65_RS20815	0.49	+1.3
4,492,143	+		DZA65_RS20815	0.49	+0.9
4,492,143	+		DZA65_RS20815	0.49	-1.7
4,492,204	+		DZA65_RS20815	0.64	+1.0
4,492,205	-		DZA65_RS20815	0.64	-1.1
4,492,322	+				+1.7
4,492,322	+				-1.2
4,492,336	+				-0.2
4,492,336	+				-0.5
4,492,336	+				+0.8
4,492,336	+				+0.0
4,492,336	+				-0.4
4,492,337	-				-1.3
4,492,351	+				-2.0
4,492,351	+				+0.7
4,492,351	+				-1.4
4,492,352	-				+0.8
4,492,374	-				+3.2
4,492,374	-				+0.8
4,492,374	-				+1.6
4,492,499	-				+1.0
4,492,508	+				-0.0
4,492,508	+				-0.5
4,492,511	+				-0.9
4,492,511	+				-0.0
4,492,511	+				+0.3
4,492,511	+				-0.7
4,492,511	+				+1.3
4,492,511	+				-1.8
4,492,511	+				-0.9
4,492,553	+				-2.7
4,492,553	+				+0.7
4,492,553	+				-0.9
4,492,554	-				-1.1
4,492,554	-				+1.3
4,492,558	+				-0.7
4,492,558	+				+0.5
4,492,559	-				+1.1
4,492,579	+				-1.1
4,492,580	-				-0.1
4,492,580	-				+0.2
4,492,580	-				+1.6
4,492,580	-				-1.1
4,492,606	+				-1.0
4,492,606	+				+1.5
4,492,607	-				-0.9
4,492,607	-				-1.1
4,492,607	-				-1.1
4,492,607	-				-0.5
4,492,607	-				+0.3
4,492,607	-				+0.3
4,492,635	-				+0.3
4,492,685	-				-1.9