Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20530

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS20525 and DZA65_RS20530 are separated by 68 nucleotidesDZA65_RS20530 and DZA65_RS20535 are separated by 90 nucleotidesDZA65_RS20535 and DZA65_RS20540 are separated by 96 nucleotides DZA65_RS20525: DZA65_RS20525 - elongation factor Tu, at 4,429,899 to 4,431,083 _RS20525 DZA65_RS20530: DZA65_RS20530 - elongation factor G, at 4,431,152 to 4,433,266 _RS20530 DZA65_RS20535: DZA65_RS20535 - 30S ribosomal protein S7, at 4,433,357 to 4,433,827 _RS20535 DZA65_RS20540: DZA65_RS20540 - 30S ribosomal protein S12, at 4,433,924 to 4,434,298 _RS20540 Position (kb) 4431 4432 4433 4434Strain fitness (log2 ratio) -2 -1 0 1at 4430.821 kb on + strand, within DZA65_RS20525at 4431.153 kb on + strandat 4433.298 kb on - strandat 4433.298 kb on - strandat 4433.298 kb on - strandat 4433.298 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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4,430,821 + DZA65_RS20525 0.78 -1.8
4,431,153 + +0.6
4,433,298 - -0.3
4,433,298 - -2.3
4,433,298 - -1.1
4,433,298 - -1.3

Or see this region's nucleotide sequence