Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20115

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
4,357,635	-		DZA65_RS20110	0.59	-1.1
4,357,635	-		DZA65_RS20110	0.59	+0.1
4,357,663	-		DZA65_RS20110	0.61	+0.9
4,357,671	+		DZA65_RS20110	0.62	+1.6
4,357,672	-		DZA65_RS20110	0.62	-0.8
4,357,706	+		DZA65_RS20110	0.64	+0.5
4,357,707	-		DZA65_RS20110	0.64	+0.6
4,357,707	-		DZA65_RS20110	0.64	+0.4
4,357,728	-		DZA65_RS20110	0.65	+0.2
4,357,781	-		DZA65_RS20110	0.69	-0.8
4,357,791	+		DZA65_RS20110	0.70	+1.2
4,357,791	+		DZA65_RS20110	0.70	-0.6
4,357,791	+		DZA65_RS20110	0.70	-0.6
4,357,791	+		DZA65_RS20110	0.70	-1.3
4,357,791	+		DZA65_RS20110	0.70	-1.8
4,357,791	+		DZA65_RS20110	0.70	-0.3
4,357,791	+		DZA65_RS20110	0.70	+0.3
4,357,792	-		DZA65_RS20110	0.70	-2.2
4,357,792	-		DZA65_RS20110	0.70	+0.2
4,357,795	+		DZA65_RS20110	0.70	-1.4
4,357,795	+		DZA65_RS20110	0.70	+1.3
4,357,795	+		DZA65_RS20110	0.70	-2.1
4,357,798	+		DZA65_RS20110	0.70	-0.1
4,357,798	+		DZA65_RS20110	0.70	-0.2
4,357,798	+		DZA65_RS20110	0.70	+1.2
4,357,799	-		DZA65_RS20110	0.70	+0.6
4,357,799	-		DZA65_RS20110	0.70	-1.6
4,357,799	-		DZA65_RS20110	0.70	-1.8
4,357,800	+		DZA65_RS20110	0.70	-0.4
4,357,800	+		DZA65_RS20110	0.70	-0.4
4,357,800	+		DZA65_RS20110	0.70	-0.5
4,357,800	+		DZA65_RS20110	0.70	-0.4
4,357,801	-		DZA65_RS20110	0.70	-2.1
4,357,801	-		DZA65_RS20110	0.70	+2.5
4,357,801	-		DZA65_RS20110	0.70	-0.6
4,357,808	-		DZA65_RS20110	0.71	-1.9
4,357,810	+		DZA65_RS20110	0.71	-1.6
4,357,811	-		DZA65_RS20110	0.71	+0.6
4,357,811	-		DZA65_RS20110	0.71	-0.5
4,357,887	+		DZA65_RS20110	0.76	-0.1
4,357,888	-		DZA65_RS20110	0.76	-1.5
4,357,888	-		DZA65_RS20110	0.76	-0.2
4,357,888	-		DZA65_RS20110	0.76	+0.2
4,357,888	-		DZA65_RS20110	0.76	-0.9
4,357,888	-		DZA65_RS20110	0.76	-1.2
4,357,891	-		DZA65_RS20110	0.76	-0.4
4,357,901	+		DZA65_RS20110	0.77	-0.2
4,357,901	+		DZA65_RS20110	0.77	+0.8
4,357,901	+		DZA65_RS20110	0.77	+1.7
4,357,901	+		DZA65_RS20110	0.77	+1.2
4,357,901	+		DZA65_RS20110	0.77	+0.8
4,357,901	+				+1.0
4,357,901	+		DZA65_RS20110	0.77	-1.6
4,357,901	+		DZA65_RS20110	0.77	+2.1
4,357,902	-		DZA65_RS20110	0.77	+1.7
4,357,902	-		DZA65_RS20110	0.77	-1.8
4,357,902	-		DZA65_RS20110	0.77	+0.5
4,357,902	-		DZA65_RS20110	0.77	+0.6
4,357,902	-		DZA65_RS20110	0.77	+0.6
4,357,902	-		DZA65_RS20110	0.77	+1.2
4,357,902	-		DZA65_RS20110	0.77	-2.1
4,357,902	-		DZA65_RS20110	0.77	-0.4
4,357,933	+		DZA65_RS20110	0.79	+0.3
4,357,934	-		DZA65_RS20110	0.79	-1.1
4,357,934	-		DZA65_RS20110	0.79	-0.5
4,357,978	+		DZA65_RS20110	0.82	+0.3
4,357,992	+		DZA65_RS20110	0.83	+0.1
4,357,992	+		DZA65_RS20110	0.83	-3.9
4,357,992	+		DZA65_RS20110	0.83	+0.8
4,357,992	+		DZA65_RS20110	0.83	+0.2
4,357,992	+		DZA65_RS20110	0.83	+1.8
4,357,992	+		DZA65_RS20110	0.83	-1.1
4,357,992	+		DZA65_RS20110	0.83	-1.1
4,357,992	+		DZA65_RS20110	0.83	+1.2
4,357,992	+		DZA65_RS20110	0.83	-2.1
4,357,993	-		DZA65_RS20110	0.83	+3.7
4,357,993	-		DZA65_RS20110	0.83	+0.8
4,357,993	-		DZA65_RS20110	0.83	-2.6
4,357,993	-		DZA65_RS20110	0.83	-0.4
4,358,007	+		DZA65_RS20110	0.84	+1.2
4,358,007	+		DZA65_RS20110	0.84	+0.2
4,358,007	+		DZA65_RS20110	0.84	-1.4
4,358,007	+		DZA65_RS20110	0.84	-0.1
4,358,008	-		DZA65_RS20110	0.84	+0.6
4,358,008	-		DZA65_RS20110	0.84	-0.0
4,358,008	-				-0.4
4,358,008	-		DZA65_RS20110	0.84	-0.1
4,358,096	+		DZA65_RS20110	0.89	+1.4
4,358,132	+				+1.2
4,358,132	+				+0.6
4,358,132	+				-0.4
4,358,132	+				-2.2
4,358,132	+				-0.8
4,358,132	+				+3.2
4,358,132	+				+0.1
4,358,132	+				+0.3
4,358,132	+				+1.3
4,358,133	-				-0.7
4,358,133	-				-0.1
4,358,133	-				+1.0
4,358,133	-				+0.6
4,358,133	-				+0.4
4,358,133	-				-0.8
4,358,133	-				-2.2
4,358,133	-				+1.2
4,358,133	-				-0.6
4,358,139	+				-2.1
4,358,139	+				-0.2
4,358,140	-				+0.9
4,358,140	-				+1.3
4,358,140	-				+0.4
4,358,140	-				-0.9
4,358,140	-				+0.2
4,358,140	-				-0.1
4,358,140	-				+0.7
4,358,140	-				-0.1
4,358,140	-				-1.8
4,358,140	-				+1.3
4,358,140	-				+0.6
4,358,140	-				+1.2
4,358,173	+				+0.7
4,358,174	-				+0.2
4,358,174	-				+1.1
4,358,174	-				+0.1
4,358,201	+				+0.8
4,358,202	-				-0.2
4,358,231	+				-0.4
4,358,311	+				-1.4
4,358,340	+				+2.5
4,358,362	+				-1.1
4,358,387	+				+2.5
4,358,399	-				-1.4
4,358,399	-				+2.2
4,358,452	+				+1.0
4,358,453	-				+1.5
4,358,453	-				+0.1
4,358,453	-				-2.2
4,358,453	-				+0.4
4,358,453	-				+2.5
4,358,453	-				+1.2
4,358,453	-				+0.4
4,358,453	-				-2.2
4,358,453	-				-0.6
4,358,453	-				-0.1
4,358,510	+				-0.8
4,358,510	+				+4.2
4,358,511	-				-2.1
4,358,601	+				+0.1
4,358,675	-				-2.1
4,358,796	+		DZA65_RS20115	0.21	-2.4
4,358,796	+		DZA65_RS20115	0.21	-2.2
4,358,797	-		DZA65_RS20115	0.21	+0.9
4,358,797	-		DZA65_RS20115	0.21	-0.8
4,358,836	+		DZA65_RS20115	0.25	+0.2
4,358,836	+		DZA65_RS20115	0.25	+0.2
4,358,836	+		DZA65_RS20115	0.25	-0.7
4,358,836	+		DZA65_RS20115	0.25	+1.8
4,358,837	-		DZA65_RS20115	0.25	+0.2
4,358,837	-		DZA65_RS20115	0.25	-0.4
4,358,848	+		DZA65_RS20115	0.26	-0.8
4,358,848	+		DZA65_RS20115	0.26	-0.4
4,358,848	+		DZA65_RS20115	0.26	-1.1
4,358,848	+		DZA65_RS20115	0.26	+0.8
4,358,848	+		DZA65_RS20115	0.26	-2.6
4,358,848	+		DZA65_RS20115	0.26	+0.2
4,358,848	+		DZA65_RS20115	0.26	+0.6
4,358,849	-		DZA65_RS20115	0.26	+1.2
4,358,849	-		DZA65_RS20115	0.26	+0.7
4,358,849	-		DZA65_RS20115	0.26	-1.1
4,358,849	-		DZA65_RS20115	0.26	-0.4
4,358,849	-		DZA65_RS20115	0.26	-0.9
4,358,849	-		DZA65_RS20115	0.26	+0.2
4,358,852	+		DZA65_RS20115	0.27	+1.2
4,358,852	+		DZA65_RS20115	0.27	-0.3
4,358,868	+		DZA65_RS20115	0.28	-1.5
4,358,868	+		DZA65_RS20115	0.28	+0.4
4,358,883	+		DZA65_RS20115	0.30	+1.4
4,358,883	+		DZA65_RS20115	0.30	-1.4
4,358,883	+		DZA65_RS20115	0.30	+1.8
4,358,883	+		DZA65_RS20115	0.30	-0.2
4,358,883	+		DZA65_RS20115	0.30	+0.4
4,358,883	+		DZA65_RS20115	0.30	-0.9
4,358,884	-		DZA65_RS20115	0.30	-0.4
4,358,884	-		DZA65_RS20115	0.30	+0.2
4,358,884	-		DZA65_RS20115	0.30	-1.4
4,358,884	-		DZA65_RS20115	0.30	-0.6
4,358,884	-		DZA65_RS20115	0.30	-0.1
4,358,884	-		DZA65_RS20115	0.30	+1.2
4,358,904	+		DZA65_RS20115	0.32	+0.8
4,358,904	+		DZA65_RS20115	0.32	-2.4
4,358,904	+		DZA65_RS20115	0.32	-0.8
4,358,905	-		DZA65_RS20115	0.32	-0.8
4,358,905	-		DZA65_RS20115	0.32	+1.2
4,358,905	-		DZA65_RS20115	0.32	+0.5
4,358,914	+		DZA65_RS20115	0.33	+0.1
4,359,115	+		DZA65_RS20115	0.54	-1.6
4,359,135	+		DZA65_RS20115	0.56	+1.1
4,359,161	+		DZA65_RS20115	0.59	+0.2
4,359,162	-		DZA65_RS20115	0.59	-1.1
4,359,162	-		DZA65_RS20115	0.59	+2.2
4,359,180	+		DZA65_RS20115	0.61	+1.4
4,359,180	+		DZA65_RS20115	0.61	-0.2
4,359,181	-		DZA65_RS20115	0.61	-1.2
4,359,181	-		DZA65_RS20115	0.61	-1.5
4,359,181	-		DZA65_RS20115	0.61	-1.1
4,359,181	-		DZA65_RS20115	0.61	-2.7
4,359,181	-		DZA65_RS20115	0.61	-0.1
4,359,199	+		DZA65_RS20115	0.63	+1.4
4,359,199	+		DZA65_RS20115	0.63	+0.2
4,359,259	+		DZA65_RS20115	0.70	+0.0
4,359,260	-		DZA65_RS20115	0.70	-0.8
4,359,260	-		DZA65_RS20115	0.70	+0.6
4,359,322	+		DZA65_RS20115	0.76	-0.9
4,359,322	+		DZA65_RS20115	0.76	-1.0
4,359,323	-		DZA65_RS20115	0.76	+3.4
4,359,323	-		DZA65_RS20115	0.76	+1.1
4,359,372	+		DZA65_RS20115	0.81	-0.1
4,359,518	+				+2.2
4,359,518	+				-1.0
4,359,518	+				-2.9
4,359,518	+				-1.4
4,359,518	+				+0.2
4,359,518	+				-1.8
4,359,518	+				-2.4
4,359,519	-				+1.8
4,359,519	-				-1.4
4,359,519	-				+2.5
4,359,519	-				+1.3
4,359,519	-				+0.2
4,359,519	-				-0.8
4,359,519	-				-0.8
4,359,519	-				+1.2
4,359,519	-				-0.2
4,359,532	+				+0.2
4,359,533	-				+0.8
4,359,548	+				-1.6
4,359,548	+				+0.5
4,359,549	-				+0.2
4,359,549	-				-0.0
4,359,549	-				-0.4
4,359,549	-				-0.9
4,359,549	-				+0.1
4,359,551	+				+2.2
4,359,551	+				+0.1
4,359,551	+				-1.4
4,359,551	+				+1.8
4,359,552	-				-2.6
4,359,552	-				-1.6
4,359,625	-				-0.4
4,359,632	+				+0.2
4,359,632	+				+1.1
4,359,633	-				-1.4
4,359,633	-				-1.0
4,359,633	-				+0.2
4,359,633	-				+0.1
4,359,633	-				-2.1
4,359,633	-				-1.1
4,359,633	-				-0.5
4,359,633	-				+0.6
4,359,662	+				+0.2
4,359,662	+				+0.3
4,359,663	-				-1.4
4,359,663	-				-1.9
4,359,743	+		DZA65_RS20120	0.13	-0.4
4,359,743	+		DZA65_RS20120	0.13	+1.2
4,359,744	-		DZA65_RS20120	0.13	-0.6
4,359,806	+		DZA65_RS20120	0.17	+1.2
4,359,807	-		DZA65_RS20120	0.17	-0.9
4,359,807	-		DZA65_RS20120	0.17	-0.7
4,359,887	+		DZA65_RS20120	0.22	+0.4
4,359,887	+		DZA65_RS20120	0.22	-0.4
4,359,888	-		DZA65_RS20120	0.22	-0.8
4,359,888	-		DZA65_RS20120	0.22	-1.1
4,359,888	-		DZA65_RS20120	0.22	+0.9
4,359,893	+		DZA65_RS20120	0.22	-1.4
4,359,893	+		DZA65_RS20120	0.22	-0.6
4,359,893	+		DZA65_RS20120	0.22	-0.0
4,359,893	+		DZA65_RS20120	0.22	+0.5
4,359,893	+		DZA65_RS20120	0.22	+0.2
4,359,894	-		DZA65_RS20120	0.22	+2.0
4,359,894	-		DZA65_RS20120	0.22	-1.4
4,359,894	-		DZA65_RS20120	0.22	+1.8
4,359,894	-		DZA65_RS20120	0.22	+0.7
4,359,894	-		DZA65_RS20120	0.22	+0.2
4,359,894	-		DZA65_RS20120	0.22	-1.8
4,359,950	+		DZA65_RS20120	0.26	-1.5
4,359,950	+		DZA65_RS20120	0.26	+1.6
4,359,950	+		DZA65_RS20120	0.26	-0.6
4,359,951	-		DZA65_RS20120	0.26	+1.2
4,359,951	-		DZA65_RS20120	0.26	+1.4
4,360,024	+		DZA65_RS20120	0.31	+1.7
4,360,025	-		DZA65_RS20120	0.31	-0.7
4,360,025	-		DZA65_RS20120	0.31	+1.2
4,360,026	+		DZA65_RS20120	0.31	+2.3
4,360,027	-		DZA65_RS20120	0.31	-0.6
4,360,038	+		DZA65_RS20120	0.32	-0.2
4,360,038	+		DZA65_RS20120	0.32	-1.4
4,360,039	-		DZA65_RS20120	0.32	+0.9
4,360,078	+		DZA65_RS20120	0.34	-1.9
4,360,078	+		DZA65_RS20120	0.34	+4.4
4,360,078	+		DZA65_RS20120	0.34	+3.2
4,360,078	+		DZA65_RS20120	0.34	-0.8
4,360,079	-		DZA65_RS20120	0.34	-1.9
4,360,079	-		DZA65_RS20120	0.34	+2.4
4,360,084	+		DZA65_RS20120	0.35	-1.8
4,360,085	-		DZA65_RS20120	0.35	-0.8
4,360,085	-		DZA65_RS20120	0.35	+0.1
4,360,087	+		DZA65_RS20120	0.35	+0.2
4,360,088	-		DZA65_RS20120	0.35	+0.3
4,360,143	+		DZA65_RS20120	0.38	-1.1
4,360,143	+		DZA65_RS20120	0.38	+1.4
4,360,144	-		DZA65_RS20120	0.39	-1.1
4,360,144	-		DZA65_RS20120	0.39	+1.2
4,360,144	-		DZA65_RS20120	0.39	-1.4
4,360,185	-		DZA65_RS20120	0.41	-1.9
4,360,185	-		DZA65_RS20120	0.41	+2.8
4,360,304	+		DZA65_RS20120	0.49	+1.2
4,360,304	+		DZA65_RS20120	0.49	-1.6
4,360,304	+		DZA65_RS20120	0.49	+0.2
4,360,304	+		DZA65_RS20120	0.49	+0.6
4,360,304	+		DZA65_RS20120	0.49	-1.4
4,360,305	-		DZA65_RS20120	0.49	-0.4
4,360,322	+		DZA65_RS20120	0.50	+0.6
4,360,322	+		DZA65_RS20120	0.50	-0.4
4,360,322	+		DZA65_RS20120	0.50	-0.8
4,360,322	+		DZA65_RS20120	0.50	+0.8
4,360,323	-		DZA65_RS20120	0.50	+0.6
4,360,323	-		DZA65_RS20120	0.50	+3.2
4,360,379	+		DZA65_RS20120	0.54	+0.2
4,360,379	+		DZA65_RS20120	0.54	-0.6
4,360,379	+		DZA65_RS20120	0.54	-0.7
4,360,379	+		DZA65_RS20120	0.54	-2.2
4,360,379	+		DZA65_RS20120	0.54	-1.8
4,360,380	-		DZA65_RS20120	0.54	-1.8
4,360,380	-		DZA65_RS20120	0.54	-0.4
4,360,380	-		DZA65_RS20120	0.54	+0.1
4,360,380	-		DZA65_RS20120	0.54	-1.4
4,360,476	-		DZA65_RS20120	0.60	+0.3
4,360,530	+		DZA65_RS20120	0.64	+0.4
4,360,530	+		DZA65_RS20120	0.64	-0.4
4,360,531	-		DZA65_RS20120	0.64	+1.0
4,360,531	-		DZA65_RS20120	0.64	-2.7
4,360,531	-		DZA65_RS20120	0.64	-2.1