Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18945

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
4,091,192	+		DZA65_RS18940	0.32	+0.1
4,091,192	+		DZA65_RS18940	0.32	+0.5
4,091,193	-		DZA65_RS18940	0.32	+1.1
4,091,193	-		DZA65_RS18940	0.32	-0.0
4,091,193	-		DZA65_RS18940	0.32	+0.4
4,091,241	+		DZA65_RS18940	0.35	-1.9
4,091,241	+		DZA65_RS18940	0.35	+0.1
4,091,242	-		DZA65_RS18940	0.35	+0.3
4,091,242	-		DZA65_RS18940	0.35	-1.6
4,091,248	+		DZA65_RS18940	0.35	+1.1
4,091,248	+		DZA65_RS18940	0.35	-2.2
4,091,248	+		DZA65_RS18940	0.35	-0.5
4,091,248	+		DZA65_RS18940	0.35	-0.3
4,091,248	+		DZA65_RS18940	0.35	-1.0
4,091,248	+		DZA65_RS18940	0.35	+0.1
4,091,249	-		DZA65_RS18940	0.36	+1.7
4,091,249	-		DZA65_RS18940	0.36	-1.2
4,091,254	+		DZA65_RS18940	0.36	-0.5
4,091,254	+		DZA65_RS18940	0.36	+0.1
4,091,255	-		DZA65_RS18940	0.36	-0.9
4,091,281	+		DZA65_RS18940	0.38	-0.1
4,091,281	+		DZA65_RS18940	0.38	+0.6
4,091,281	+		DZA65_RS18940	0.38	-0.5
4,091,281	+		DZA65_RS18940	0.38	-0.5
4,091,281	+		DZA65_RS18940	0.38	+0.5
4,091,282	-		DZA65_RS18940	0.38	+0.4
4,091,282	-		DZA65_RS18940	0.38	-0.0
4,091,282	-		DZA65_RS18940	0.38	+0.1
4,091,311	+		DZA65_RS18940	0.40	-0.5
4,091,311	+		DZA65_RS18940	0.40	-0.5
4,091,311	+		DZA65_RS18940	0.40	+0.2
4,091,312	-		DZA65_RS18940	0.40	-0.1
4,091,312	-		DZA65_RS18940	0.40	-0.5
4,091,335	+		DZA65_RS18940	0.42	+0.5
4,091,335	+		DZA65_RS18940	0.42	-0.9
4,091,336	-		DZA65_RS18940	0.42	-1.0
4,091,336	-		DZA65_RS18940	0.42	+0.4
4,091,336	-		DZA65_RS18940	0.42	-0.6
4,091,336	-				-1.7
4,091,336	-		DZA65_RS18940	0.42	+0.5
4,091,336	-		DZA65_RS18940	0.42	-0.2
4,091,336	-		DZA65_RS18940	0.42	-0.5
4,091,336	-		DZA65_RS18940	0.42	+0.1
4,091,383	-		DZA65_RS18940	0.45	+2.7
4,091,392	+		DZA65_RS18940	0.46	-0.2
4,091,392	+		DZA65_RS18940	0.46	-0.3
4,091,392	+		DZA65_RS18940	0.46	+2.7
4,091,392	+		DZA65_RS18940	0.46	+0.9
4,091,392	+		DZA65_RS18940	0.46	+0.6
4,091,392	+		DZA65_RS18940	0.46	+0.1
4,091,392	+		DZA65_RS18940	0.46	-1.2
4,091,392	+		DZA65_RS18940	0.46	-2.7
4,091,392	+		DZA65_RS18940	0.46	+1.7
4,091,393	-		DZA65_RS18940	0.46	-0.1
4,091,393	-		DZA65_RS18940	0.46	+0.6
4,091,393	-		DZA65_RS18940	0.46	+1.1
4,091,393	-		DZA65_RS18940	0.46	-0.5
4,091,393	-		DZA65_RS18940	0.46	-0.5
4,091,393	-		DZA65_RS18940	0.46	+1.1
4,091,395	+		DZA65_RS18940	0.46	-2.0
4,091,395	+		DZA65_RS18940	0.46	-1.4
4,091,395	+		DZA65_RS18940	0.46	+1.1
4,091,396	-		DZA65_RS18940	0.46	-0.5
4,091,396	-		DZA65_RS18940	0.46	-1.5
4,091,396	-		DZA65_RS18940	0.46	+0.5
4,091,396	-		DZA65_RS18940	0.46	+1.7
4,091,396	-		DZA65_RS18940	0.46	-2.5
4,091,533	-		DZA65_RS18940	0.55	-1.8
4,091,533	-		DZA65_RS18940	0.55	+0.6
4,091,556	+		DZA65_RS18940	0.57	-0.7
4,091,557	-		DZA65_RS18940	0.57	+0.1
4,091,557	-		DZA65_RS18940	0.57	-0.5
4,091,629	+		DZA65_RS18940	0.62	+0.5
4,091,630	-		DZA65_RS18940	0.62	-0.0
4,091,703	+		DZA65_RS18940	0.67	-1.5
4,091,703	+		DZA65_RS18940	0.67	-2.2
4,091,703	+		DZA65_RS18940	0.67	+1.1
4,091,703	+		DZA65_RS18940	0.67	-0.6
4,091,703	+		DZA65_RS18940	0.67	+0.3
4,091,703	+		DZA65_RS18940	0.67	+0.4
4,091,704	-		DZA65_RS18940	0.68	+0.8
4,091,704	-		DZA65_RS18940	0.68	-0.5
4,091,704	-		DZA65_RS18940	0.68	+1.7
4,091,764	+		DZA65_RS18940	0.72	+0.8
4,091,773	+		DZA65_RS18940	0.72	-1.2
4,091,773	+		DZA65_RS18940	0.72	-0.2
4,091,773	+		DZA65_RS18940	0.72	+0.5
4,091,773	+		DZA65_RS18940	0.72	-3.1
4,091,773	+		DZA65_RS18940	0.72	+1.5
4,091,774	-		DZA65_RS18940	0.72	+1.7
4,091,774	-		DZA65_RS18940	0.72	+2.4
4,091,774	-		DZA65_RS18940	0.72	+0.0
4,091,774	-		DZA65_RS18940	0.72	-1.6
4,091,776	+		DZA65_RS18940	0.73	+1.5
4,091,776	+		DZA65_RS18940	0.73	+1.1
4,091,776	+		DZA65_RS18940	0.73	-0.9
4,091,776	+		DZA65_RS18940	0.73	-1.7
4,091,776	+		DZA65_RS18940	0.73	+0.1
4,091,776	+		DZA65_RS18940	0.73	-0.2
4,091,777	-		DZA65_RS18940	0.73	-0.2
4,091,777	-		DZA65_RS18940	0.73	+0.1
4,091,893	-		DZA65_RS18940	0.81	-1.3
4,091,941	+		DZA65_RS18940	0.84	-0.3
4,091,941	+		DZA65_RS18940	0.84	-0.2
4,091,941	+		DZA65_RS18940	0.84	+0.2
4,091,941	+		DZA65_RS18940	0.84	-0.4
4,092,016	+		DZA65_RS18940	0.89	-2.2
4,092,016	+		DZA65_RS18940	0.89	+0.8
4,092,016	+		DZA65_RS18940	0.89	-1.5
4,092,016	+		DZA65_RS18940	0.89	+0.1
4,092,016	+		DZA65_RS18940	0.89	+1.5
4,092,016	+		DZA65_RS18940	0.89	-2.1
4,092,016	+		DZA65_RS18940	0.89	+0.9
4,092,016	+		DZA65_RS18940	0.89	+0.1
4,092,016	+		DZA65_RS18940	0.89	+0.1
4,092,016	+		DZA65_RS18940	0.89	-1.5
4,092,016	+		DZA65_RS18940	0.89	-1.0
4,092,016	+		DZA65_RS18940	0.89	-1.1
4,092,017	-				-0.5
4,092,017	-		DZA65_RS18940	0.90	+1.5
4,092,017	-		DZA65_RS18940	0.90	-0.5
4,092,017	-		DZA65_RS18940	0.90	+0.3
4,092,017	-		DZA65_RS18940	0.90	+0.8
4,092,048	+				-1.2
4,092,048	+				+0.8
4,092,048	+				+0.1
4,092,048	+				+1.1
4,092,048	+				-1.9
4,092,048	+				+2.1
4,092,048	+				+0.1
4,092,048	+				-2.0
4,092,048	+				-0.6
4,092,048	+				-0.6
4,092,048	+				-0.0
4,092,048	+				+0.8
4,092,048	+				+0.5
4,092,049	-				+0.3
4,092,049	-				+1.4
4,092,049	-				+0.5
4,092,049	-				-2.9
4,092,049	-				-0.7
4,092,049	-				+2.5
4,092,049	-				-0.5
4,092,049	-				-0.6
4,092,049	-				-0.7
4,092,052	+				-0.9
4,092,052	+				+0.3
4,092,052	+				-0.1
4,092,052	+				+1.8
4,092,052	+				-0.3
4,092,052	+				+0.3
4,092,052	+				-0.7
4,092,052	+				+1.5
4,092,052	+				+1.1
4,092,052	+				-0.5
4,092,052	+				+0.5
4,092,053	-				+1.1
4,092,053	-				-1.9
4,092,053	-				+0.3
4,092,053	-				-0.3
4,092,053	-				+1.9
4,092,053	-				-1.5
4,092,053	-				-1.2
4,092,053	-				-1.2
4,092,053	-				+1.5
4,092,053	-				-2.6
4,092,053	-				-0.5
4,092,053	-				+0.1
4,092,053	-				+0.8
4,092,053	-				-0.2
4,092,053	-				+1.9
4,092,053	-				-1.7
4,092,053	-				+0.0
4,092,099	+				+0.7
4,092,146	+				-0.2
4,092,163	+				-0.9
4,092,163	+				+0.8
4,092,163	+				+2.5
4,092,163	+				-0.1
4,092,163	+				-0.7
4,092,163	+				+0.5
4,092,163	+				-1.5
4,092,163	+				+0.2
4,092,163	+				-2.2
4,092,163	+				-0.1
4,092,163	+				-0.7
4,092,163	+				+0.7
4,092,163	+				+2.0
4,092,163	+				+0.5
4,092,163	+				-0.0
4,092,163	+				+0.3
4,092,163	+				-1.7
4,092,164	-				-1.2
4,092,164	-				-0.3
4,092,164	-				+0.2
4,092,164	-				+1.1
4,092,164	-				-1.0
4,092,164	-				+0.4
4,092,164	-				+0.7
4,092,167	+				+1.1
4,092,167	+				+0.9
4,092,167	+				+0.7
4,092,167	+				-2.6
4,092,167	+				+0.1
4,092,167	+				-1.7
4,092,167	+				-0.5
4,092,168	-				+0.2
4,092,168	-				-1.0
4,092,168	-				-1.2
4,092,190	-				-0.5
4,092,240	+				+1.3
4,092,240	+				+0.8
4,092,250	+				-0.9
4,092,250	+				+1.1
4,092,250	+				+1.0
4,092,250	+				-2.6
4,092,250	+				-2.7
4,092,250	+				-0.5
4,092,250	+				-1.5
4,092,250	+				-1.5
4,092,250	+				-0.2
4,092,250	+				+1.0
4,092,250	+				+0.1
4,092,250	+				-0.5
4,092,250	+				+2.9
4,092,251	-				-1.5
4,092,251	-				+1.4
4,092,251	-				+0.1
4,092,251	-				+0.9
4,092,251	-				-1.1
4,092,303	+		DZA65_RS18945	0.11	+1.1
4,092,359	+		DZA65_RS18945	0.16	-0.7
4,092,359	+		DZA65_RS18945	0.16	+1.8
4,092,359	+		DZA65_RS18945	0.16	+1.1
4,092,360	-		DZA65_RS18945	0.16	-2.7
4,092,360	-		DZA65_RS18945	0.16	+0.1
4,092,360	-		DZA65_RS18945	0.16	-0.7
4,092,360	-		DZA65_RS18945	0.16	+1.1
4,092,367	+		DZA65_RS18945	0.17	+0.4
4,092,367	+		DZA65_RS18945	0.17	-1.5
4,092,367	+		DZA65_RS18945	0.17	+1.5
4,092,368	-		DZA65_RS18945	0.17	+1.1
4,092,493	+		DZA65_RS18945	0.27	+0.1
4,092,493	+		DZA65_RS18945	0.27	-1.5
4,092,493	+		DZA65_RS18945	0.27	-0.2
4,092,494	-		DZA65_RS18945	0.27	-1.3
4,092,494	-		DZA65_RS18945	0.27	-1.3
4,092,562	+		DZA65_RS18945	0.33	+1.0
4,092,562	+		DZA65_RS18945	0.33	-2.0
4,092,562	+		DZA65_RS18945	0.33	+2.1
4,092,562	+		DZA65_RS18945	0.33	-0.5
4,092,563	-		DZA65_RS18945	0.33	-2.9
4,092,664	+		DZA65_RS18945	0.42	-0.7
4,092,664	+		DZA65_RS18945	0.42	-1.1
4,092,664	+		DZA65_RS18945	0.42	+0.1
4,092,664	+		DZA65_RS18945	0.42	-0.3
4,092,741	+		DZA65_RS18945	0.48	-0.0
4,092,785	+		DZA65_RS18945	0.52	+2.0
4,092,785	+		DZA65_RS18945	0.52	-0.9
4,092,785	+		DZA65_RS18945	0.52	-0.5
4,092,786	-		DZA65_RS18945	0.52	+0.1
4,092,786	-		DZA65_RS18945	0.52	+0.1
4,092,786	-		DZA65_RS18945	0.52	+2.0
4,092,786	-		DZA65_RS18945	0.52	-1.5
4,092,798	+		DZA65_RS18945	0.53	-1.2
4,092,798	+		DZA65_RS18945	0.53	-1.2
4,092,799	-		DZA65_RS18945	0.53	-0.9
4,092,799	-		DZA65_RS18945	0.53	-1.3
4,092,799	-		DZA65_RS18945	0.53	-1.5
4,092,859	+		DZA65_RS18945	0.58	-1.2
4,093,027	+		DZA65_RS18945	0.73	-0.5
4,093,027	+		DZA65_RS18945	0.73	-1.5
4,093,028	-		DZA65_RS18945	0.73	-0.4
4,093,028	-		DZA65_RS18945	0.73	+1.3
4,093,241	-				-0.3
4,093,287	+				+0.2
4,093,287	+				-0.6
4,093,287	+				+1.5
4,093,287	+				-1.9
4,093,291	+				-0.2
4,093,291	+				-0.0
4,093,291	+				+1.0
4,093,291	+				-0.9
4,093,292	-				-1.2
4,093,292	-				-1.0
4,093,292	-				-0.5
4,093,312	+				-1.2
4,093,312	+				+0.9
4,093,312	+				+0.1
4,093,312	+				+1.5
4,093,312	+				-2.9
4,093,312	+				-1.2
4,093,313	-				+1.3
4,093,313	-				-1.7
4,093,313	-				-1.5
4,093,313	-				+0.3
4,093,430	+				+0.0
4,093,430	+				+0.1
4,093,430	+				+2.7
4,093,431	-				-1.2
4,093,431	-				-2.3
4,093,431	-				-0.8
4,093,431	-				-1.5
4,093,431	-				+0.1
4,093,431	-				+2.3
4,093,439	+				-1.7
4,093,440	-				-0.5
4,093,448	+				-0.5
4,093,472	-				+1.5
4,093,488	+				+1.1
4,093,488	+				-0.9
4,093,489	-				+0.4
4,093,489	-				+0.5
4,093,489	-				+1.0
4,093,507	+				+0.3
4,093,507	+				+0.4
4,093,507	+				+3.1
4,093,508	-				-3.3
4,093,508	-				-0.5
4,093,519	+				+0.5
4,093,519	+				-1.2
4,093,520	-				-0.0
4,093,520	-				-1.9
4,093,567	+		DZA65_RS18950	0.12	-1.0
4,093,567	+		DZA65_RS18950	0.12	+0.5
4,093,567	+		DZA65_RS18950	0.12	+0.7
4,093,567	+		DZA65_RS18950	0.12	-1.7
4,093,568	-		DZA65_RS18950	0.13	+1.1
4,093,597	-		DZA65_RS18950	0.19	+1.2
4,093,597	-		DZA65_RS18950	0.19	+0.8
4,093,619	+		DZA65_RS18950	0.23	-1.5
4,093,619	+		DZA65_RS18950	0.23	-0.5
4,093,619	+		DZA65_RS18950	0.23	-1.0
4,093,619	+		DZA65_RS18950	0.23	-1.2
4,093,620	-		DZA65_RS18950	0.24	-0.4
4,093,620	-		DZA65_RS18950	0.24	+0.3
4,093,620	-		DZA65_RS18950	0.24	+2.0
4,093,620	-		DZA65_RS18950	0.24	-2.2
4,093,620	-		DZA65_RS18950	0.24	-1.0
4,093,620	-		DZA65_RS18950	0.24	+0.5
4,093,620	-		DZA65_RS18950	0.24	-1.8
4,093,647	-		DZA65_RS18950	0.29	-0.3
4,093,647	-		DZA65_RS18950	0.29	-0.1
4,093,647	-		DZA65_RS18950	0.29	-2.9
4,093,647	-		DZA65_RS18950	0.29	-3.0
4,093,691	-		DZA65_RS18950	0.39	+0.3
4,093,747	-		DZA65_RS18950	0.50	-1.6
4,093,806	+		DZA65_RS18950	0.63	-1.5
4,093,806	+		DZA65_RS18950	0.63	+1.1
4,093,806	+		DZA65_RS18950	0.63	-0.5
4,093,807	-		DZA65_RS18950	0.63	-0.5
4,093,807	-		DZA65_RS18950	0.63	-1.5
4,093,807	-		DZA65_RS18950	0.63	-0.2
4,093,807	-		DZA65_RS18950	0.63	+3.5
4,093,807	-		DZA65_RS18950	0.63	-1.9
4,093,907	-		DZA65_RS18950	0.84	+0.8
4,093,963	-				-1.9
4,093,963	-				+1.7
4,093,963	-				+0.1
4,093,963	-				+0.8
4,093,987	+				-0.7
4,093,987	+				+0.1
4,093,987	+				+0.5
4,093,987	+				+1.6
4,093,987	+				-1.1
4,093,987	+				+0.1
4,093,988	-				-1.0
4,094,284	+		DZA65_RS18955	0.43	+1.1
4,094,284	+				-2.2
4,094,285	-		DZA65_RS18955	0.43	+1.3