Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14050

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,012,105	+				+0.2
3,012,105	+				-2.3
3,012,105	+				-1.8
3,012,105	+				-1.7
3,012,106	-				-2.1
3,012,106	-				-0.8
3,012,106	-				-2.0
3,012,106	-				-3.3
3,012,106	-				-1.6
3,012,106	-				-0.8
3,012,106	-				-0.8
3,012,218	-				-2.4
3,012,247	+				-3.1
3,012,247	+				-2.1
3,012,247	+				-2.0
3,012,247	+				-1.8
3,012,247	+				-2.0
3,012,247	+				-3.5
3,012,248	-				-2.6
3,012,248	-				-1.4
3,012,253	+				-1.8
3,012,253	+				-0.6
3,012,253	+				-1.8
3,012,253	+				-4.2
3,012,254	-				-1.9
3,012,254	-				-1.2
3,012,254	-				-1.4
3,012,254	-				-0.4
3,012,255	+				-1.9
3,012,255	+				-2.1
3,012,255	+				-0.8
3,012,256	-				-1.6
3,012,256	-				-0.4
3,012,263	+				+0.4
3,012,263	+				-0.8
3,012,263	+				-2.1
3,012,263	+				-1.8
3,012,263	+				-0.6
3,012,263	+				+0.8
3,012,264	-				+0.2
3,012,264	-				-2.9
3,012,264	-				-0.6
3,012,264	-				-1.6
3,012,311	+				-2.2
3,012,319	+				-2.9
3,012,319	+				-1.0
3,012,320	-				+0.5
3,012,323	+				-2.2
3,012,324	-				-0.1
3,012,324	-				+0.3
3,012,324	-				-1.0
3,012,328	+				+0.2
3,012,329	-				+0.6
3,012,356	-				+1.8
3,012,379	-				-0.0
3,012,390	+				-1.2
3,012,390	+				-1.6
3,012,390	+				+0.5
3,012,390	+				-1.2
3,012,390	+				-0.2
3,012,391	-				+0.6
3,012,391	-				-0.4
3,012,391	-				-3.6
3,012,391	-				-0.2
3,012,391	-				-0.0
3,012,391	-				-1.0
3,012,391	-				-2.6
3,012,396	-				-0.8
3,012,487	-				-2.2
3,012,495	+				-1.6
3,012,496	-				-1.8
3,012,496	-				-2.4
3,012,496	-				-3.0
3,012,510	+		DZA65_RS14045	0.11	-1.8
3,012,511	-		DZA65_RS14045	0.11	-1.4
3,012,528	+		DZA65_RS14045	0.13	-1.6
3,012,640	-		DZA65_RS14045	0.31	-2.0
3,012,640	-		DZA65_RS14045	0.31	-1.3
3,012,691	+		DZA65_RS14045	0.39	-1.7
3,012,692	-		DZA65_RS14045	0.39	-2.2
3,012,714	+		DZA65_RS14045	0.42	-0.8
3,012,714	+		DZA65_RS14045	0.42	-0.7
3,012,714	+		DZA65_RS14045	0.42	-0.8
3,012,714	+		DZA65_RS14045	0.42	-1.6
3,012,714	+		DZA65_RS14045	0.42	-2.7
3,012,714	+				-0.2
3,012,737	+		DZA65_RS14045	0.46	-1.2
3,012,738	-		DZA65_RS14045	0.46	+0.8
3,012,775	+		DZA65_RS14045	0.52	-1.2
3,012,775	+		DZA65_RS14045	0.52	-1.0
3,012,775	+		DZA65_RS14045	0.52	-3.3
3,012,776	-		DZA65_RS14045	0.52	-2.2
3,012,776	-		DZA65_RS14045	0.52	-3.6
3,012,776	-		DZA65_RS14045	0.52	-1.8
3,012,913	+		DZA65_RS14045	0.73	-0.8
3,012,913	+		DZA65_RS14045	0.73	-0.8
3,012,913	+		DZA65_RS14045	0.73	-1.6
3,012,914	-		DZA65_RS14045	0.73	-3.0
3,012,914	-		DZA65_RS14045	0.73	-2.2
3,012,914	-		DZA65_RS14045	0.73	-1.8
3,012,914	-		DZA65_RS14045	0.73	-1.9
3,012,917	+		DZA65_RS14045	0.74	+0.8
3,012,917	+		DZA65_RS14045	0.74	-2.4
3,012,917	+		DZA65_RS14045	0.74	-0.8
3,012,917	+		DZA65_RS14045	0.74	-0.2
3,012,917	+		DZA65_RS14045	0.74	-2.6
3,012,917	+		DZA65_RS14045	0.74	-1.0
3,012,918	-		DZA65_RS14045	0.74	-2.1
3,012,918	-		DZA65_RS14045	0.74	-2.2
3,012,918	-		DZA65_RS14045	0.74	-2.6
3,012,918	-		DZA65_RS14045	0.74	-0.2
3,012,918	-		DZA65_RS14045	0.74	-3.6
3,012,918	-		DZA65_RS14045	0.74	-2.0
3,012,918	-		DZA65_RS14045	0.74	-1.6
3,012,918	-		DZA65_RS14045	0.74	+1.6
3,012,918	-		DZA65_RS14045	0.74	-3.5
3,012,918	-		DZA65_RS14045	0.74	-0.6
3,012,977	-		DZA65_RS14045	0.83	-0.8
3,013,036	-				-2.2
3,013,036	-				-2.4
3,013,036	-				-2.8
3,013,036	-				-1.2
3,013,097	+				-1.8
3,013,097	+				-2.0
3,013,097	+				-3.1
3,013,097	+				-0.5
3,013,097	+				-1.3
3,013,097	+				-1.9
3,013,097	+				-3.4
3,013,097	+				-1.8
3,013,097	+				-4.1
3,013,098	-				-2.8
3,013,098	-				-1.4
3,013,098	-				-0.4
3,013,098	-				-0.8
3,013,098	-				-1.2
3,013,098	-				-1.8
3,013,098	-				+0.3
3,013,098	-				-1.6
3,013,098	-				-1.8
3,013,098	-				-0.2
3,013,098	-				-0.8
3,013,098	-				-0.6
3,013,098	-				+1.2
3,013,101	+				-1.4
3,013,102	-				-1.6
3,013,102	-				-0.0
3,013,102	-				-0.6
3,013,102	-				-0.2
3,013,102	-				-1.8
3,013,102	-				-1.6
3,013,102	-				+0.8
3,013,123	-				-2.2
3,013,152	+		DZA65_RS14050	0.14	-0.6
3,013,153	-		DZA65_RS14050	0.15	-0.0
3,013,162	-		DZA65_RS14050	0.17	-1.2
3,013,169	+		DZA65_RS14050	0.19	-2.7
3,013,169	+		DZA65_RS14050	0.19	-2.2
3,013,200	+		DZA65_RS14050	0.27	-2.0
3,013,200	+		DZA65_RS14050	0.27	-0.6
3,013,200	+		DZA65_RS14050	0.27	-1.1
3,013,200	+		DZA65_RS14050	0.27	-1.6
3,013,201	-		DZA65_RS14050	0.27	-1.1
3,013,201	-		DZA65_RS14050	0.27	-2.8
3,013,201	-		DZA65_RS14050	0.27	-1.0
3,013,203	+		DZA65_RS14050	0.27	-3.0
3,013,203	+		DZA65_RS14050	0.27	-0.8
3,013,204	-		DZA65_RS14050	0.28	-1.8
3,013,204	-		DZA65_RS14050	0.28	-0.8
3,013,282	+		DZA65_RS14050	0.48	-2.2
3,013,282	+		DZA65_RS14050	0.48	-2.6
3,013,282	+		DZA65_RS14050	0.48	-1.2
3,013,282	+		DZA65_RS14050	0.48	+0.0
3,013,282	+		DZA65_RS14050	0.48	-1.2
3,013,282	+		DZA65_RS14050	0.48	-1.8
3,013,282	+		DZA65_RS14050	0.48	-1.9
3,013,283	-		DZA65_RS14050	0.48	+0.5
3,013,283	-		DZA65_RS14050	0.48	-2.1
3,013,283	-		DZA65_RS14050	0.48	-1.2
3,013,300	-		DZA65_RS14050	0.52	-3.0
3,013,392	+		DZA65_RS14050	0.76	-0.8
3,013,393	-		DZA65_RS14050	0.76	-2.0
3,013,429	-		DZA65_RS14050	0.85	-1.8
3,013,429	-		DZA65_RS14050	0.85	-1.2
3,013,429	-		DZA65_RS14050	0.85	-1.6
3,013,456	+				-0.2
3,013,457	-				-1.4
3,013,460	-				-1.4
3,013,485	+				-0.8
3,013,485	+				-2.8
3,013,485	+				-2.7
3,013,485	+				-2.7
3,013,486	-				-1.6
3,013,486	-				-1.6
3,013,489	+				-1.1
3,013,489	+				-3.8
3,013,489	+				-0.8
3,013,490	-				-2.7
3,013,490	-				-2.6
3,013,490	-				-0.0
3,013,490	-				+0.8
3,013,495	+				-1.5
3,013,496	-				-3.2
3,013,498	+				-1.0
3,013,498	+				-2.3
3,013,498	+				-1.8
3,013,498	+				-1.4
3,013,498	+				-1.0
3,013,499	-				-2.6
3,013,499	-				+0.2
3,013,499	-				-1.8
3,013,499	-				-1.8
3,013,499	-				-0.8
3,013,499	-				-2.0
3,013,499	-				-2.4
3,013,501	+				-2.4
3,013,502	-				+0.9
3,013,521	+				+0.3
3,013,521	+				-2.3
3,013,521	+				-1.8
3,013,521	+				-0.5
3,013,521	+				-2.2
3,013,521	+				-0.2
3,013,521	+				-0.7
3,013,521	+				+0.9
3,013,522	-				-1.8
3,013,522	-				-1.8
3,013,522	-				-1.4
3,013,522	-				-3.0
3,013,522	-				-2.7
3,013,522	-				-2.9
3,013,522	-				-1.8
3,013,523	+				-3.0
3,013,523	+				-1.6
3,013,524	-				-1.2
3,013,524	-				-2.6
3,013,524	-				-2.0
3,013,525	+				-2.8
3,013,525	+				+1.2
3,013,525	+				-1.1
3,013,525	+				-1.2
3,013,525	+				-0.8
3,013,525	+				+0.2
3,013,525	+				-1.8
3,013,525	+				-3.2
3,013,525	+				-2.7
3,013,525	+				-1.8
3,013,525	+				-0.1
3,013,525	+				-2.4
3,013,525	+				-1.8
3,013,525	+				-1.6
3,013,526	-				-0.2
3,013,526	-				-1.9
3,013,526	-				-2.4
3,013,526	-				-1.2
3,013,526	-				+0.8
3,013,526	-				-1.7
3,013,526	-				-3.4
3,013,526	-				-2.0
3,013,526	-				-1.6
3,013,526	-				-0.6
3,013,526	-				-1.3
3,013,526	-				-1.2
3,013,526	-				-0.8
3,013,526	-				-1.0
3,013,526	-				-0.8
3,013,526	-				-1.2
3,013,526	-				-1.4
3,013,526	-				-2.0
3,013,526	-				-2.0
3,013,526	-				-0.8
3,013,526	-				-1.2
3,013,526	-				-1.0
3,013,526	-				-2.3
3,013,526	-				-1.8
3,013,529	+				+0.3
3,013,529	+				-1.0
3,013,529	+				-2.7
3,013,529	+				-0.6
3,013,530	-				-0.8
3,013,530	-				-0.4
3,013,530	-				-2.6
3,013,530	-				-1.0
3,013,530	-				-1.4
3,013,616	-				-1.5
3,013,669	+		DZA65_RS14055	0.14	-2.0
3,013,669	+		DZA65_RS14055	0.14	+1.2
3,013,669	+		DZA65_RS14055	0.14	-0.3
3,013,670	-		DZA65_RS14055	0.14	-2.2
3,013,670	-		DZA65_RS14055	0.14	-2.0
3,013,671	+		DZA65_RS14055	0.14	-1.8
3,013,672	-		DZA65_RS14055	0.14	-0.8
3,013,685	-		DZA65_RS14055	0.16	-5.0
3,013,736	+		DZA65_RS14055	0.21	-1.1
3,013,736	+		DZA65_RS14055	0.21	+0.4
3,013,736	+		DZA65_RS14055	0.21	-2.8
3,013,737	-		DZA65_RS14055	0.21	-1.2
3,013,761	+		DZA65_RS14055	0.23	+0.8
3,013,762	-		DZA65_RS14055	0.23	-2.2
3,013,784	+		DZA65_RS14055	0.25	-3.0
3,013,784	+		DZA65_RS14055	0.25	-1.8
3,013,784	+		DZA65_RS14055	0.25	-0.8
3,013,785	-		DZA65_RS14055	0.25	-1.2
3,013,785	-		DZA65_RS14055	0.25	+0.8
3,013,785	-		DZA65_RS14055	0.25	-0.5
3,013,835	+		DZA65_RS14055	0.30	-1.8
3,013,842	+		DZA65_RS14055	0.31	-2.0
3,013,843	-		DZA65_RS14055	0.31	-2.1
3,013,891	+		DZA65_RS14055	0.35	-2.0
3,013,891	+		DZA65_RS14055	0.35	-1.1
3,013,892	-		DZA65_RS14055	0.35	-0.2
3,013,892	-		DZA65_RS14055	0.35	-2.4
3,013,892	-		DZA65_RS14055	0.35	-1.2
3,013,892	-		DZA65_RS14055	0.35	+0.8
3,013,892	-		DZA65_RS14055	0.35	-1.6
3,013,893	+		DZA65_RS14055	0.35	-0.8
3,013,893	+		DZA65_RS14055	0.35	-3.0
3,013,893	+				-1.6
3,013,893	+		DZA65_RS14055	0.35	-1.8
3,013,894	-		DZA65_RS14055	0.36	-3.1
3,013,894	-		DZA65_RS14055	0.36	-2.4
3,013,894	-		DZA65_RS14055	0.36	-3.3
3,013,942	+		DZA65_RS14055	0.40	-2.9
3,013,942	+		DZA65_RS14055	0.40	-2.6
3,013,942	+		DZA65_RS14055	0.40	-0.2
3,013,957	+		DZA65_RS14055	0.42	-2.0
3,013,957	+		DZA65_RS14055	0.42	-1.2
3,013,957	+		DZA65_RS14055	0.42	-1.2
3,013,958	-		DZA65_RS14055	0.42	-1.8
3,013,984	+		DZA65_RS14055	0.44	-2.8
3,013,985	-		DZA65_RS14055	0.44	+0.8
3,014,000	-		DZA65_RS14055	0.46	-1.9
3,014,000	-		DZA65_RS14055	0.46	-1.6
3,014,000	-		DZA65_RS14055	0.46	-3.2
3,014,000	-		DZA65_RS14055	0.46	-1.6
3,014,056	+		DZA65_RS14055	0.51	-0.9
3,014,056	+		DZA65_RS14055	0.51	-2.2
3,014,057	-		DZA65_RS14055	0.51	-2.2
3,014,068	+		DZA65_RS14055	0.52	-3.0
3,014,069	-		DZA65_RS14055	0.52	-2.2
3,014,108	-		DZA65_RS14055	0.56	-2.0
3,014,122	+		DZA65_RS14055	0.57	-0.8
3,014,122	+		DZA65_RS14055	0.57	-0.8
3,014,122	+		DZA65_RS14055	0.57	-2.0
3,014,123	-		DZA65_RS14055	0.57	-1.2
3,014,123	-		DZA65_RS14055	0.57	-3.8
3,014,125	+		DZA65_RS14055	0.57	-2.6
3,014,125	+		DZA65_RS14055	0.57	-2.4
3,014,126	-		DZA65_RS14055	0.58	-0.8
3,014,126	-		DZA65_RS14055	0.58	-2.2
3,014,126	-		DZA65_RS14055	0.58	+0.4
3,014,126	-		DZA65_RS14055	0.58	-0.2
3,014,140	+		DZA65_RS14055	0.59	-1.2
3,014,141	-		DZA65_RS14055	0.59	-3.3
3,014,217	+		DZA65_RS14055	0.66	-2.2
3,014,217	+		DZA65_RS14055	0.66	-1.6
3,014,217	+		DZA65_RS14055	0.66	-0.2
3,014,217	+		DZA65_RS14055	0.66	-0.6
3,014,217	+		DZA65_RS14055	0.66	-2.0
3,014,217	+		DZA65_RS14055	0.66	-2.6
3,014,217	+		DZA65_RS14055	0.66	-1.8
3,014,218	-		DZA65_RS14055	0.66	-2.9
3,014,218	-		DZA65_RS14055	0.66	-0.6
3,014,296	+		DZA65_RS14055	0.74	-1.7
3,014,297	-		DZA65_RS14055	0.74	-0.4
3,014,441	+		DZA65_RS14055	0.87	-0.2
3,014,442	-		DZA65_RS14055	0.88	-2.7