Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13435

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,882,034	-				+0.8
2,882,055	+				-0.2
2,882,176	+				-2.2
2,882,176	+				-2.2
2,882,176	+				-2.8
2,882,176	+				-1.5
2,882,176	+				-0.5
2,882,176	+				-2.0
2,882,177	-				-1.0
2,882,177	-				-2.6
2,882,177	-				-1.8
2,882,180	-				-0.8
2,882,210	-				-0.2
2,882,256	+				-2.1
2,882,256	+				-1.2
2,882,257	-				-1.2
2,882,257	-				-2.7
2,882,291	+				-2.2
2,882,310	+		DZA65_RS13435	0.11	-0.8
2,882,310	+		DZA65_RS13435	0.11	-0.2
2,882,311	-		DZA65_RS13435	0.11	-2.1
2,882,340	+		DZA65_RS13435	0.14	-1.5
2,882,367	-		DZA65_RS13435	0.16	-1.0
2,882,381	+		DZA65_RS13435	0.17	-0.2
2,882,381	+		DZA65_RS13435	0.17	-0.8
2,882,382	-		DZA65_RS13435	0.18	-0.8
2,882,466	-		DZA65_RS13435	0.25	-1.5
2,882,466	-		DZA65_RS13435	0.25	-1.8
2,882,468	+		DZA65_RS13435	0.25	-1.2
2,882,468	+		DZA65_RS13435	0.25	-3.4
2,882,468	+		DZA65_RS13435	0.25	+0.8
2,882,468	+		DZA65_RS13435	0.25	-1.4
2,882,469	-		DZA65_RS13435	0.25	-2.0
2,882,511	+		DZA65_RS13435	0.29	-1.5
2,882,512	-				-1.8
2,882,569	+		DZA65_RS13435	0.34	-2.0
2,882,574	+		DZA65_RS13435	0.34	-0.2
2,882,574	+		DZA65_RS13435	0.34	-2.7
2,882,583	-		DZA65_RS13435	0.35	-1.0
2,882,589	+		DZA65_RS13435	0.36	-0.8
2,882,589	+		DZA65_RS13435	0.36	+1.4
2,882,589	+		DZA65_RS13435	0.36	+1.5
2,882,628	+		DZA65_RS13435	0.39	-0.5
2,882,629	-				-0.8
2,882,629	-		DZA65_RS13435	0.39	-2.9
2,882,629	-		DZA65_RS13435	0.39	+0.8
2,882,666	+		DZA65_RS13435	0.43	-3.4
2,882,666	+		DZA65_RS13435	0.43	+0.8
2,882,671	-		DZA65_RS13435	0.43	+2.2
2,882,732	+		DZA65_RS13435	0.48	-3.1
2,882,796	+		DZA65_RS13435	0.54	+0.8
2,882,796	+		DZA65_RS13435	0.54	+0.5
2,882,796	+		DZA65_RS13435	0.54	-1.4
2,882,798	+		DZA65_RS13435	0.54	-0.8
2,882,798	+		DZA65_RS13435	0.54	-3.3
2,882,798	+		DZA65_RS13435	0.54	-1.5
2,882,798	+		DZA65_RS13435	0.54	-0.5
2,882,798	+		DZA65_RS13435	0.54	-0.8
2,882,799	-		DZA65_RS13435	0.54	-0.5
2,882,799	-		DZA65_RS13435	0.54	+0.2
2,882,799	-		DZA65_RS13435	0.54	-0.5
2,882,815	+		DZA65_RS13435	0.56	-0.8
2,882,832	+		DZA65_RS13435	0.57	-2.8
2,882,832	+		DZA65_RS13435	0.57	-1.2
2,882,832	+		DZA65_RS13435	0.57	-0.0
2,882,832	+		DZA65_RS13435	0.57	-0.8
2,882,832	+		DZA65_RS13435	0.57	+0.8
2,882,832	+		DZA65_RS13435	0.57	-2.5
2,882,833	-		DZA65_RS13435	0.57	-0.8
2,882,833	-		DZA65_RS13435	0.57	-2.3
2,882,834	+		DZA65_RS13435	0.57	-1.5
2,882,834	+		DZA65_RS13435	0.57	-1.0
2,882,834	+		DZA65_RS13435	0.57	-2.5
2,882,835	-		DZA65_RS13435	0.58	-1.2
2,882,835	-		DZA65_RS13435	0.58	-3.3
2,882,835	-		DZA65_RS13435	0.58	-1.0
2,882,835	-		DZA65_RS13435	0.58	-1.2
2,882,835	-		DZA65_RS13435	0.58	-1.2
2,882,849	+		DZA65_RS13435	0.59	-2.4
2,882,849	+		DZA65_RS13435	0.59	-0.6
2,882,940	+		DZA65_RS13435	0.67	-1.2
2,882,940	+		DZA65_RS13435	0.67	-3.5
2,882,941	-		DZA65_RS13435	0.67	-0.3
2,882,941	-		DZA65_RS13435	0.67	+0.8
2,882,949	-		DZA65_RS13435	0.68	-1.1
2,882,958	+		DZA65_RS13435	0.68	-1.5
2,882,958	+		DZA65_RS13435	0.68	-1.2
2,882,959	-		DZA65_RS13435	0.69	-2.2
2,882,959	-		DZA65_RS13435	0.69	-2.4
2,882,959	-		DZA65_RS13435	0.69	-2.2
2,882,973	+		DZA65_RS13435	0.70	-1.5
2,882,974	-		DZA65_RS13435	0.70	-1.5
2,882,998	-		DZA65_RS13435	0.72	-2.6
2,883,005	+		DZA65_RS13435	0.73	-2.9
2,883,040	+		DZA65_RS13435	0.76	-1.8
2,883,041	-		DZA65_RS13435	0.76	-4.0
2,883,041	-		DZA65_RS13435	0.76	-0.8
2,883,041	-		DZA65_RS13435	0.76	-1.8
2,883,062	+		DZA65_RS13435	0.78	-0.2
2,883,157	-		DZA65_RS13435	0.86	-2.5
2,883,168	+		DZA65_RS13435	0.87	-0.8
2,883,168	+		DZA65_RS13435	0.87	-3.2
2,883,169	-		DZA65_RS13435	0.87	-1.2
2,883,173	+		DZA65_RS13435	0.87	-2.4
2,883,174	-		DZA65_RS13435	0.88	-0.2
2,883,189	+		DZA65_RS13435	0.89	+0.8
2,883,190	-		DZA65_RS13435	0.89	-1.5
2,883,230	+				-0.8
2,883,233	+				-2.0
2,883,262	-				-1.8
2,883,313	-				-2.4
2,883,318	+				+1.4
2,883,319	-				-0.1
2,883,339	-				+0.5
2,883,354	+				-0.6
2,883,355	-				-0.2
2,883,433	-				+0.1
2,883,441	-				-0.8
2,883,475	+				+0.5
2,883,505	+				+0.8
2,883,560	+				+1.4
2,883,738	-				+0.6
2,883,742	-				-0.2
2,883,742	-				+0.3
2,883,825	-				-1.2
2,883,839	+				+0.6
2,883,840	-				-1.1
2,883,841	+				+0.6
2,883,842	-				+0.5
2,883,842	-				-0.8
2,883,842	-				+0.4
2,883,859	+				-1.5
2,883,859	+				-0.2
2,883,859	+				-0.2
2,883,859	+				-0.2
2,883,859	+				-1.0
2,883,859	+				-2.2
2,883,859	+				-0.8
2,883,860	-				-2.5
2,883,861	+				-0.5
2,883,862	-				-0.8
2,883,877	+				-1.5
2,883,882	+				-1.0
2,883,882	+				+1.2
2,883,922	+				+1.6
2,883,923	-				+0.2
2,883,937	-				-2.0
2,883,938	+				+1.1
2,883,939	-				-0.2
2,883,940	+				+0.9
2,883,941	-				+1.3
2,883,943	+				-0.6
2,883,993	-		DZA65_RS13440	0.12	+0.5
2,884,040	+		DZA65_RS13440	0.16	-0.2
2,884,040	+		DZA65_RS13440	0.16	-2.0
2,884,040	+		DZA65_RS13440	0.16	-1.2
2,884,040	+		DZA65_RS13440	0.16	+2.1
2,884,041	-		DZA65_RS13440	0.16	+1.8
2,884,041	-		DZA65_RS13440	0.16	+1.5
2,884,041	-		DZA65_RS13440	0.16	-0.4
2,884,079	-		DZA65_RS13440	0.20	-1.0
2,884,109	+		DZA65_RS13440	0.22	+0.2
2,884,160	-		DZA65_RS13440	0.27	+2.6
2,884,160	-		DZA65_RS13440	0.27	-0.7
2,884,163	-		DZA65_RS13440	0.27	-0.4
2,884,187	+		DZA65_RS13440	0.29	-1.5
2,884,243	+		DZA65_RS13440	0.35	-0.8
2,884,249	+		DZA65_RS13440	0.35	+1.1
2,884,249	+		DZA65_RS13440	0.35	+1.1
2,884,249	+		DZA65_RS13440	0.35	+0.5
2,884,256	+		DZA65_RS13440	0.36	+1.2
2,884,271	+		DZA65_RS13440	0.37	+0.6
2,884,271	+		DZA65_RS13440	0.37	+1.1
2,884,271	+		DZA65_RS13440	0.37	+0.8
2,884,271	+		DZA65_RS13440	0.37	-0.4
2,884,271	+		DZA65_RS13440	0.37	-0.4
2,884,271	+		DZA65_RS13440	0.37	-1.2
2,884,272	-		DZA65_RS13440	0.37	+0.8
2,884,272	-		DZA65_RS13440	0.37	+0.8
2,884,272	-		DZA65_RS13440	0.37	+0.6
2,884,272	-		DZA65_RS13440	0.37	-0.2
2,884,272	-		DZA65_RS13440	0.37	-0.8
2,884,272	-		DZA65_RS13440	0.37	-1.2
2,884,273	+		DZA65_RS13440	0.37	+0.4
2,884,273	+		DZA65_RS13440	0.37	-0.1
2,884,274	-		DZA65_RS13440	0.37	+1.0
2,884,310	+		DZA65_RS13440	0.41	-2.2
2,884,310	+		DZA65_RS13440	0.41	-0.8
2,884,310	+		DZA65_RS13440	0.41	+1.2
2,884,310	+		DZA65_RS13440	0.41	+0.0
2,884,311	-		DZA65_RS13440	0.41	-0.9
2,884,311	-		DZA65_RS13440	0.41	-0.3
2,884,311	-		DZA65_RS13440	0.41	-1.3
2,884,311	-		DZA65_RS13440	0.41	-0.1
2,884,311	-		DZA65_RS13440	0.41	-1.8
2,884,311	-		DZA65_RS13440	0.41	-0.1
2,884,311	-		DZA65_RS13440	0.41	-1.1
2,884,311	-		DZA65_RS13440	0.41	+0.3