Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10490

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,225,267	-		DZA65_RS10480	0.76	-1.4
2,225,306	+		DZA65_RS10480	0.81	+0.6
2,225,307	-		DZA65_RS10480	0.81	+1.0
2,225,321	+		DZA65_RS10480	0.83	-2.0
2,225,322	-		DZA65_RS10480	0.83	-1.7
2,225,322	-		DZA65_RS10480	0.83	-1.1
2,225,432	+				+1.8
2,225,447	+				+0.3
2,225,448	-				-0.8
2,225,448	-				-1.7
2,225,448	-				+0.6
2,225,448	-				-1.7
2,225,448	-				+0.9
2,225,463	+				+1.3
2,225,463	+				-0.8
2,225,463	+				-2.2
2,225,463	+				-0.7
2,225,463	+				-0.6
2,225,464	-				-1.0
2,225,488	+				-2.0
2,225,489	-				-0.0
2,225,513	-				-2.8
2,225,549	+				-2.0
2,225,558	+				+1.4
2,225,572	-				+0.4
2,225,581	+				+1.6
2,225,585	+				-2.0
2,225,604	+				-2.0
2,225,605	-				-1.0
2,225,607	+				-2.2
2,225,607	+				-1.4
2,225,608	-				+0.4
2,225,608	-				-1.0
2,225,643	+		DZA65_RS10485	0.18	-2.2
2,225,643	+		DZA65_RS10485	0.18	-2.0
2,225,643	+				-2.2
2,225,643	+		DZA65_RS10485	0.18	+1.0
2,225,644	-		DZA65_RS10485	0.19	-1.0
2,225,644	-		DZA65_RS10485	0.19	-1.4
2,225,644	-		DZA65_RS10485	0.19	-0.4
2,225,644	-		DZA65_RS10485	0.19	+0.6
2,225,644	-		DZA65_RS10485	0.19	-1.2
2,225,644	-		DZA65_RS10485	0.19	+0.6
2,225,648	-		DZA65_RS10485	0.20	-3.1
2,225,697	+		DZA65_RS10485	0.32	-1.0
2,225,698	-		DZA65_RS10485	0.32	-2.0
2,225,701	-				-0.4
2,225,701	-		DZA65_RS10485	0.33	-1.0
2,225,808	+		DZA65_RS10485	0.60	+0.0
2,225,808	+		DZA65_RS10485	0.60	-1.9
2,225,809	-		DZA65_RS10485	0.60	-1.4
2,225,924	+		DZA65_RS10485	0.89	-0.6
2,225,924	+		DZA65_RS10485	0.89	-2.4
2,225,950	-				+0.6
2,225,950	-				-2.0
2,226,003	-				-0.3
2,226,007	+				+0.0
2,226,008	-				-1.2
2,226,008	-				-0.5
2,226,023	+				+0.6
2,226,027	+				+0.3
2,226,027	+				-1.5
2,226,027	+				-0.5
2,226,028	-				+0.8
2,226,028	-				+0.3
2,226,028	-				+1.2
2,226,028	-				+0.0
2,226,028	-				+0.7
2,226,038	+				-1.8
2,226,039	-				-1.0
2,226,039	-				-1.4
2,226,039	-				-1.5
2,226,044	-				-0.1
2,226,044	-				-0.5
2,226,044	-				-0.1
2,226,071	-				-1.0
2,226,071	-				+0.6
2,226,073	+				-1.0
2,226,073	+				-2.0
2,226,074	-				-0.4
2,226,252	-		DZA65_RS10490	0.14	-0.1
2,226,257	+		DZA65_RS10490	0.15	+0.5
2,226,258	-		DZA65_RS10490	0.15	-2.5
2,226,266	-		DZA65_RS10490	0.16	+0.8
2,226,266	-		DZA65_RS10490	0.16	-1.0
2,226,441	-		DZA65_RS10490	0.38	-1.4
2,226,486	+		DZA65_RS10490	0.43	+1.4
2,226,564	+		DZA65_RS10490	0.53	-1.4
2,226,564	+		DZA65_RS10490	0.53	+0.0
2,226,564	+		DZA65_RS10490	0.53	+0.6
2,226,565	-		DZA65_RS10490	0.53	+0.6
2,226,565	-		DZA65_RS10490	0.53	+0.3
2,226,593	+		DZA65_RS10490	0.56	-0.5
2,226,594	-		DZA65_RS10490	0.56	+0.2
2,226,612	+		DZA65_RS10490	0.59	-1.4
2,226,612	+		DZA65_RS10490	0.59	-3.2
2,226,612	+		DZA65_RS10490	0.59	-0.1
2,226,612	+		DZA65_RS10490	0.59	-1.0
2,226,612	+		DZA65_RS10490	0.59	+1.8
2,226,612	+		DZA65_RS10490	0.59	-1.4
2,226,612	+		DZA65_RS10490	0.59	+1.0
2,226,612	+		DZA65_RS10490	0.59	+0.0
2,226,612	+		DZA65_RS10490	0.59	-1.1
2,226,612	+		DZA65_RS10490	0.59	+0.8
2,226,612	+		DZA65_RS10490	0.59	-1.7
2,226,613	-		DZA65_RS10490	0.59	+2.7
2,226,613	-		DZA65_RS10490	0.59	-1.0
2,226,613	-		DZA65_RS10490	0.59	-2.4
2,226,613	-		DZA65_RS10490	0.59	-2.0
2,226,613	-		DZA65_RS10490	0.59	-2.0
2,226,613	-		DZA65_RS10490	0.59	-1.0
2,226,613	-		DZA65_RS10490	0.59	+1.0
2,226,794	+		DZA65_RS10490	0.81	+0.6
2,226,795	-		DZA65_RS10490	0.81	+0.5
2,226,835	+		DZA65_RS10490	0.86	+0.1
2,226,877	+				-2.5
2,226,933	+				+0.5
2,226,943	+				-2.5
2,226,943	+				+0.6
2,226,943	+				-1.0
2,226,943	+				+2.1
2,226,943	+				+1.8
2,226,943	+				+0.0
2,226,943	+				-0.1
2,226,944	-				-1.7
2,226,944	-				+0.1
2,226,944	-				+0.1
2,226,944	-				-2.2
2,226,944	-				-2.0
2,226,944	-				+0.0
2,226,944	-				+1.2
2,226,947	+				-1.8
2,226,947	+				-0.2
2,226,947	+				-1.2
2,226,947	+				-1.7
2,226,947	+				-1.0
2,226,947	+				+0.6
2,226,948	-				-1.7
2,226,948	-				-0.8
2,226,948	-				+0.0
2,226,948	-				-0.0
2,226,948	-				-1.4
2,226,948	-				+0.4
2,226,948	-				+2.2
2,226,948	-				+2.2
2,226,948	-				-1.4
2,226,948	-				-0.8
2,226,948	-				+1.4
2,226,948	-				-0.5
2,226,948	-				-2.2
2,226,948	-				-1.4
2,226,948	-				+0.6
2,226,948	-				-1.4
2,226,948	-				-1.0
2,226,948	-				-0.8
2,227,009	+				+0.2
2,227,009	+				-2.2
2,227,009	+				-0.4
2,227,010	-				-2.0
2,227,010	-				+1.3
2,227,010	-				+0.1
2,227,010	-				-1.2
2,227,030	-				+0.6
2,227,030	-				+0.4
2,227,034	+				+0.7
2,227,034	+				-0.4
2,227,038	-				-1.0
2,227,123	+				+0.9
2,227,123	+				+0.5
2,227,123	+				+2.1
2,227,123	+				-0.2
2,227,123	+				-1.2
2,227,123	+				-1.4
2,227,123	+				+0.9
2,227,124	-				+0.1
2,227,124	-				-2.0
2,227,124	-				-0.4
2,227,127	+				+1.5
2,227,127	+				+0.3
2,227,128	-				-1.7
2,227,128	-				+0.8
2,227,128	-				-1.1
2,227,128	-				+1.2
2,227,149	+				+0.6
2,227,149	+				-0.2
2,227,149	+				-1.8
2,227,149	+				+0.4
2,227,149	+				-0.1
2,227,151	+				-2.4
2,227,151	+				-0.1
2,227,151	+				-0.9
2,227,151	+				-0.6
2,227,151	+				-0.6