Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09030

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
1,899,882	+				-0.1
1,899,882	+				+0.4
1,899,882	+				-1.3
1,899,882	+				-0.1
1,899,882	+				+0.3
1,899,883	-				-0.7
1,899,892	+		DZA65_RS09025	0.10	-0.0
1,899,892	+		DZA65_RS09025	0.10	-0.9
1,899,893	-		DZA65_RS09025	0.10	-0.5
1,899,939	+		DZA65_RS09025	0.15	+2.1
1,900,135	+				-1.7
1,900,305	+		DZA65_RS09025	0.51	+0.7
1,900,305	+		DZA65_RS09025	0.51	-0.6
1,900,305	+		DZA65_RS09025	0.51	-0.9
1,900,305	+		DZA65_RS09025	0.51	+0.2
1,900,306	-		DZA65_RS09025	0.51	-1.9
1,900,306	-		DZA65_RS09025	0.51	+0.3
1,900,306	-		DZA65_RS09025	0.51	-0.1
1,900,306	-		DZA65_RS09025	0.51	-1.4
1,900,387	+		DZA65_RS09025	0.59	-0.5
1,900,387	+		DZA65_RS09025	0.59	+0.1
1,900,387	+		DZA65_RS09025	0.59	-0.0
1,900,388	-		DZA65_RS09025	0.59	+2.6
1,900,388	-		DZA65_RS09025	0.59	-0.1
1,900,389	+		DZA65_RS09025	0.59	-0.8
1,900,390	-		DZA65_RS09025	0.59	-0.9
1,900,390	-		DZA65_RS09025	0.59	-0.5
1,900,450	+		DZA65_RS09025	0.65	-0.6
1,900,450	+		DZA65_RS09025	0.65	-0.3
1,900,451	-		DZA65_RS09025	0.65	+0.2
1,900,451	-		DZA65_RS09025	0.65	-1.3
1,900,451	-		DZA65_RS09025	0.65	-2.1
1,900,456	+		DZA65_RS09025	0.66	-1.7
1,900,456	+		DZA65_RS09025	0.66	-2.3
1,900,456	+		DZA65_RS09025	0.66	-0.1
1,900,457	-		DZA65_RS09025	0.66	+0.9
1,900,457	-		DZA65_RS09025	0.66	-0.6
1,900,457	-		DZA65_RS09025	0.66	-1.3
1,900,457	-		DZA65_RS09025	0.66	-0.3
1,900,457	-		DZA65_RS09025	0.66	+0.7
1,900,457	-		DZA65_RS09025	0.66	-1.2
1,900,457	-		DZA65_RS09025	0.66	+0.5
1,900,459	+		DZA65_RS09025	0.66	+0.1
1,900,460	-		DZA65_RS09025	0.66	+0.1
1,900,460	-		DZA65_RS09025	0.66	+1.0
1,900,504	-		DZA65_RS09025	0.71	-0.8
1,900,513	+		DZA65_RS09025	0.71	-0.3
1,900,513	+		DZA65_RS09025	0.71	-1.3
1,900,513	+		DZA65_RS09025	0.71	-1.3
1,900,513	+		DZA65_RS09025	0.71	-0.6
1,900,513	+		DZA65_RS09025	0.71	+0.4
1,900,514	-		DZA65_RS09025	0.71	-0.3
1,900,514	-		DZA65_RS09025	0.71	+0.5
1,900,514	-		DZA65_RS09025	0.71	-0.2
1,900,514	-		DZA65_RS09025	0.71	+0.1
1,900,514	-		DZA65_RS09025	0.71	-0.3
1,900,516	+		DZA65_RS09025	0.72	-0.9
1,900,516	+		DZA65_RS09025	0.72	-0.8
1,900,587	+		DZA65_RS09025	0.79	+0.8
1,900,587	+		DZA65_RS09025	0.79	-0.8
1,900,587	+		DZA65_RS09025	0.79	-1.7
1,900,587	+				+0.7
1,900,587	+		DZA65_RS09025	0.79	-3.3
1,900,587	+		DZA65_RS09025	0.79	-1.7
1,900,588	-		DZA65_RS09025	0.79	-1.3
1,900,588	-		DZA65_RS09025	0.79	-1.9
1,900,588	-		DZA65_RS09025	0.79	-0.1
1,900,670	-		DZA65_RS09025	0.87	-0.7
1,900,801	+				+0.1
1,900,802	-				+0.4
1,900,802	-				-2.7
1,900,802	-				+2.0
1,900,830	+				-0.2
1,900,830	+				-1.3
1,900,830	+				+0.3
1,900,831	-				-1.7
1,900,837	+				+1.7
1,900,837	+				-1.8
1,900,837	+				+0.7
1,900,837	+				+0.7
1,900,838	-				-1.3
1,900,838	-				-1.7
1,900,838	-				+0.1
1,900,838	-				+0.4
1,900,838	-				+0.7
1,901,020	-		DZA65_RS09030	0.11	+0.5
1,901,062	+		DZA65_RS09030	0.14	-1.3
1,901,062	+		DZA65_RS09030	0.14	+0.3
1,901,062	+		DZA65_RS09030	0.14	-0.5
1,901,063	-		DZA65_RS09030	0.14	+0.7
1,901,063	-				-0.7
1,901,063	-		DZA65_RS09030	0.14	+0.3
1,901,063	-		DZA65_RS09030	0.14	+0.3
1,901,065	+		DZA65_RS09030	0.14	+0.7
1,901,066	-		DZA65_RS09030	0.14	+0.7
1,901,070	+				-1.3
1,901,071	-		DZA65_RS09030	0.15	-1.1
1,901,216	+		DZA65_RS09030	0.24	-0.9
1,901,296	+		DZA65_RS09030	0.29	+1.1
1,901,297	-		DZA65_RS09030	0.29	-1.9
1,901,297	-		DZA65_RS09030	0.29	-1.3
1,901,300	+		DZA65_RS09030	0.29	-0.5
1,901,301	-		DZA65_RS09030	0.29	+1.1
1,901,301	-		DZA65_RS09030	0.29	+1.7
1,901,301	-		DZA65_RS09030	0.29	-1.1
1,901,468	+		DZA65_RS09030	0.40	-0.7
1,901,468	+		DZA65_RS09030	0.40	+0.2
1,901,468	+		DZA65_RS09030	0.40	-0.2
1,901,478	-		DZA65_RS09030	0.40	+0.2
1,901,533	+		DZA65_RS09030	0.44	+0.0
1,901,534	-		DZA65_RS09030	0.44	-0.2
1,901,534	-		DZA65_RS09030	0.44	-0.1
1,901,534	-		DZA65_RS09030	0.44	-2.1
1,901,534	-		DZA65_RS09030	0.44	-0.3
1,901,571	+		DZA65_RS09030	0.46	+0.1
1,901,796	+		DZA65_RS09030	0.60	-0.4
1,901,796	+		DZA65_RS09030	0.60	-1.1
1,901,796	+		DZA65_RS09030	0.60	-1.1
1,901,796	+		DZA65_RS09030	0.60	+1.2
1,901,796	+		DZA65_RS09030	0.60	-0.8
1,901,796	+		DZA65_RS09030	0.60	+0.2
1,901,797	-		DZA65_RS09030	0.60	-2.1
1,901,924	+		DZA65_RS09030	0.68	-1.7
1,901,948	+		DZA65_RS09030	0.70	-1.9
1,901,948	+		DZA65_RS09030	0.70	-0.9
1,901,948	+		DZA65_RS09030	0.70	+0.3
1,901,948	+		DZA65_RS09030	0.70	-0.3
1,901,948	+		DZA65_RS09030	0.70	-0.1
1,901,948	+		DZA65_RS09030	0.70	-1.4
1,901,948	+		DZA65_RS09030	0.70	+0.4
1,901,948	+		DZA65_RS09030	0.70	-1.7
1,901,949	-		DZA65_RS09030	0.70	-0.3
1,901,949	-		DZA65_RS09030	0.70	-0.1
1,901,949	-		DZA65_RS09030	0.70	+0.7
1,901,949	-		DZA65_RS09030	0.70	+2.1
1,901,949	-		DZA65_RS09030	0.70	-0.1
1,901,949	-		DZA65_RS09030	0.70	+0.1
1,901,949	-		DZA65_RS09030	0.70	-1.7
1,901,949	-		DZA65_RS09030	0.70	-1.9
1,902,010	+		DZA65_RS09030	0.74	+0.5
1,902,011	-		DZA65_RS09030	0.74	+0.1
1,902,026	+		DZA65_RS09030	0.75	+1.7
1,902,027	-		DZA65_RS09030	0.75	+2.1
1,902,027	-		DZA65_RS09030	0.75	-1.0
1,902,027	-		DZA65_RS09030	0.75	+0.1
1,902,027	-		DZA65_RS09030	0.75	+0.1
1,902,041	-		DZA65_RS09030	0.76	+0.3
1,902,056	+		DZA65_RS09030	0.76	-0.9
1,902,056	+		DZA65_RS09030	0.76	-0.7
1,902,056	+		DZA65_RS09030	0.76	-0.3
1,902,057	-		DZA65_RS09030	0.77	+1.2
1,902,057	-		DZA65_RS09030	0.77	-1.5
1,902,057	-		DZA65_RS09030	0.77	+1.3
1,902,057	-		DZA65_RS09030	0.77	-1.3
1,902,070	+		DZA65_RS09030	0.77	-0.0
1,902,070	+		DZA65_RS09030	0.77	-1.1
1,902,071	-		DZA65_RS09030	0.77	-0.0
1,902,071	-		DZA65_RS09030	0.77	-0.9
1,902,071	-		DZA65_RS09030	0.77	+1.5
1,902,252	+		DZA65_RS09030	0.89	+0.3
1,902,252	+		DZA65_RS09030	0.89	-0.0
1,902,253	-		DZA65_RS09030	0.89	-0.3
1,902,332	+				-1.1
1,902,332	+				-0.3
1,902,332	+				+0.2
1,902,332	+				+1.1
1,902,333	-				-1.3
1,902,333	-				-2.8
1,902,333	-				+1.1
1,902,333	-				-0.1
1,902,333	-				-0.4
1,902,333	-				-1.3
1,902,333	-				+0.3
1,902,333	-				-0.9
1,902,333	-				+0.7
1,902,361	+				-1.3
1,902,398	+				-0.5
1,902,398	+				+0.7
1,902,416	-				-0.7
1,902,426	+				-1.7
1,902,426	+				+0.7
1,902,427	-				+0.4
1,902,427	-				-1.9
1,902,432	+				-1.3
1,902,432	+				-0.9
1,902,433	-				+1.1
1,902,433	-				-2.5
1,902,433	-				-0.3
1,902,445	+				-0.3
1,902,708	+		DZA65_RS09035	0.27	+1.0
1,903,096	+		DZA65_RS09035	0.63	-1.9
1,903,097	-		DZA65_RS09035	0.63	-1.7
1,903,097	-		DZA65_RS09035	0.63	-0.7
1,903,360	-		DZA65_RS09035	0.88	-1.1
1,903,379	+		DZA65_RS09035	0.90	+2.0
1,903,379	+		DZA65_RS09035	0.90	-1.3
1,903,380	-				+0.2
1,903,380	-				-1.0
1,903,380	-				-2.5