Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06455

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS06445 and DZA65_RS06450 are separated by 176 nucleotidesDZA65_RS06450 and DZA65_RS06455 are separated by 2 nucleotidesDZA65_RS06455 and DZA65_RS06460 are separated by 147 nucleotides DZA65_RS06445: DZA65_RS06445 - M48 family metallopeptidase, at 1,342,461 to 1,343,924 _RS06445 DZA65_RS06450: DZA65_RS06450 - thioredoxin-dependent thiol peroxidase, at 1,344,101 to 1,344,568 _RS06450 DZA65_RS06455: DZA65_RS06455 - glycine cleavage system transcriptional repressor, at 1,344,571 to 1,345,140 _RS06455 DZA65_RS06460: DZA65_RS06460 - 4-hydroxy-tetrahydrodipicolinate synthase, at 1,345,288 to 1,346,166 _RS06460 Position (kb) 1344 1345 1346Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1343.624 kb on + strand, within DZA65_RS06445at 1343.625 kb on - strand, within DZA65_RS06445at 1343.651 kb on + strand, within DZA65_RS06445at 1343.701 kb on + strand, within DZA65_RS06445at 1343.701 kb on + strand, within DZA65_RS06445at 1343.701 kb on + strand, within DZA65_RS06445at 1343.701 kb on + strand, within DZA65_RS06445at 1343.702 kb on - strand, within DZA65_RS06445at 1343.702 kb on - strand, within DZA65_RS06445at 1343.702 kb on - strand, within DZA65_RS06445at 1343.702 kb on - strand, within DZA65_RS06445at 1343.713 kb on - strand, within DZA65_RS06445at 1343.745 kb on + strand, within DZA65_RS06445at 1343.758 kb on + strand, within DZA65_RS06445at 1343.874 kb on + strandat 1343.874 kb on + strandat 1343.924 kb on + strandat 1343.931 kb on + strandat 1344.019 kb on + strandat 1344.019 kb on + strandat 1344.019 kb on + strandat 1344.020 kb on - strandat 1344.020 kb on - strandat 1344.081 kb on + strandat 1344.082 kb on - strandat 1344.178 kb on + strand, within DZA65_RS06450at 1344.178 kb on + strand, within DZA65_RS06450at 1344.178 kb on + strand, within DZA65_RS06450at 1344.178 kb on + strand, within DZA65_RS06450at 1344.178 kb on + strand, within DZA65_RS06450at 1344.178 kb on + strand, within DZA65_RS06450at 1344.179 kb on - strand, within DZA65_RS06450at 1344.179 kb on - strand, within DZA65_RS06450at 1344.179 kb on - strand, within DZA65_RS06450at 1344.179 kb on - strand, within DZA65_RS06450at 1344.179 kb on - strand, within DZA65_RS06450at 1344.214 kb on + strand, within DZA65_RS06450at 1344.215 kb on - strand, within DZA65_RS06450at 1344.215 kb on - strand, within DZA65_RS06450at 1344.222 kb on + strand, within DZA65_RS06450at 1344.222 kb on + strand, within DZA65_RS06450at 1344.222 kb on + strand, within DZA65_RS06450at 1344.222 kb on + strand, within DZA65_RS06450at 1344.222 kb on + strand, within DZA65_RS06450at 1344.222 kb on + strand, within DZA65_RS06450at 1344.222 kb on + strand, within DZA65_RS06450at 1344.223 kb on - strand, within DZA65_RS06450at 1344.223 kb on - strand, within DZA65_RS06450at 1344.235 kb on + strand, within DZA65_RS06450at 1344.307 kb on + strand, within DZA65_RS06450at 1344.307 kb on + strand, within DZA65_RS06450at 1344.307 kb on + strand, within DZA65_RS06450at 1344.307 kb on + strand, within DZA65_RS06450at 1344.308 kb on - strand, within DZA65_RS06450at 1344.308 kb on - strand, within DZA65_RS06450at 1344.308 kb on - strand, within DZA65_RS06450at 1344.308 kb on - strand, within DZA65_RS06450at 1344.308 kb on - strand, within DZA65_RS06450at 1344.308 kb on - strand, within DZA65_RS06450at 1344.326 kb on - strand, within DZA65_RS06450at 1344.361 kb on + strand, within DZA65_RS06450at 1344.362 kb on - strand, within DZA65_RS06450at 1344.362 kb on - strand, within DZA65_RS06450at 1344.456 kb on + strand, within DZA65_RS06450at 1344.457 kb on - strand, within DZA65_RS06450at 1344.462 kb on + strand, within DZA65_RS06450at 1344.462 kb on + strand, within DZA65_RS06450at 1344.462 kb on + strand, within DZA65_RS06450at 1344.462 kb on + strandat 1344.462 kb on + strand, within DZA65_RS06450at 1344.462 kb on + strand, within DZA65_RS06450at 1344.462 kb on + strand, within DZA65_RS06450at 1344.462 kb on + strand, within DZA65_RS06450at 1344.462 kb on + strand, within DZA65_RS06450at 1344.462 kb on + strand, within DZA65_RS06450at 1344.462 kb on + strand, within DZA65_RS06450at 1344.462 kb on + strand, within DZA65_RS06450at 1344.462 kb on + strand, within DZA65_RS06450at 1344.462 kb on + strand, within DZA65_RS06450at 1344.463 kb on - strand, within DZA65_RS06450at 1344.463 kb on - strand, within DZA65_RS06450at 1344.463 kb on - strand, within DZA65_RS06450at 1344.463 kb on - strand, within DZA65_RS06450at 1344.463 kb on - strand, within DZA65_RS06450at 1344.499 kb on + strand, within DZA65_RS06450at 1344.499 kb on + strand, within DZA65_RS06450at 1344.499 kb on + strand, within DZA65_RS06450at 1344.499 kb on + strand, within DZA65_RS06450at 1344.500 kb on - strand, within DZA65_RS06450at 1344.500 kb on - strand, within DZA65_RS06450at 1344.529 kb on + strandat 1344.530 kb on - strandat 1344.544 kb on + strandat 1344.572 kb on + strandat 1344.572 kb on + strandat 1344.573 kb on - strandat 1344.602 kb on + strandat 1344.603 kb on - strandat 1344.603 kb on - strandat 1344.615 kb on + strandat 1344.616 kb on - strandat 1344.618 kb on + strandat 1344.618 kb on + strandat 1344.618 kb on + strandat 1344.619 kb on - strandat 1344.619 kb on - strandat 1344.619 kb on - strandat 1344.642 kb on + strand, within DZA65_RS06455at 1344.642 kb on + strand, within DZA65_RS06455at 1344.642 kb on + strand, within DZA65_RS06455at 1344.642 kb on + strand, within DZA65_RS06455at 1344.642 kb on + strand, within DZA65_RS06455at 1344.643 kb on - strand, within DZA65_RS06455at 1344.643 kb on - strand, within DZA65_RS06455at 1344.643 kb on - strand, within DZA65_RS06455at 1344.643 kb on - strand, within DZA65_RS06455at 1344.643 kb on - strand, within DZA65_RS06455at 1344.643 kb on - strand, within DZA65_RS06455at 1344.643 kb on - strand, within DZA65_RS06455at 1344.643 kb on - strand, within DZA65_RS06455at 1344.646 kb on + strand, within DZA65_RS06455at 1344.646 kb on + strand, within DZA65_RS06455at 1344.646 kb on + strand, within DZA65_RS06455at 1344.646 kb on + strand, within DZA65_RS06455at 1344.646 kb on + strand, within DZA65_RS06455at 1344.646 kb on + strand, within DZA65_RS06455at 1344.646 kb on + strand, within DZA65_RS06455at 1344.646 kb on + strand, within DZA65_RS06455at 1344.646 kb on + strand, within DZA65_RS06455at 1344.646 kb on + strand, within DZA65_RS06455at 1344.646 kb on + strand, within DZA65_RS06455at 1344.646 kb on + strand, within DZA65_RS06455at 1344.646 kb on + strand, within DZA65_RS06455at 1344.646 kb on + strand, within DZA65_RS06455at 1344.646 kb on + strand, within DZA65_RS06455at 1344.647 kb on - strand, within DZA65_RS06455at 1344.647 kb on - strand, within DZA65_RS06455at 1344.647 kb on - strand, within DZA65_RS06455at 1344.647 kb on - strand, within DZA65_RS06455at 1344.647 kb on - strand, within DZA65_RS06455at 1344.669 kb on + strand, within DZA65_RS06455at 1344.669 kb on + strand, within DZA65_RS06455at 1344.669 kb on + strand, within DZA65_RS06455at 1344.670 kb on - strand, within DZA65_RS06455at 1344.716 kb on + strand, within DZA65_RS06455at 1344.716 kb on + strand, within DZA65_RS06455at 1344.716 kb on + strand, within DZA65_RS06455at 1344.716 kb on + strand, within DZA65_RS06455at 1344.716 kb on + strand, within DZA65_RS06455at 1344.716 kb on + strand, within DZA65_RS06455at 1344.716 kb on + strand, within DZA65_RS06455at 1344.716 kb on + strand, within DZA65_RS06455at 1344.716 kb on + strand, within DZA65_RS06455at 1344.716 kb on + strand, within DZA65_RS06455at 1344.717 kb on - strand, within DZA65_RS06455at 1344.717 kb on - strand, within DZA65_RS06455at 1344.717 kb on - strand, within DZA65_RS06455at 1344.717 kb on - strand, within DZA65_RS06455at 1344.717 kb on - strand, within DZA65_RS06455at 1344.717 kb on - strand, within DZA65_RS06455at 1344.717 kb on - strand, within DZA65_RS06455at 1344.717 kb on - strand, within DZA65_RS06455at 1344.733 kb on - strand, within DZA65_RS06455at 1344.804 kb on + strand, within DZA65_RS06455at 1344.805 kb on - strand, within DZA65_RS06455at 1344.853 kb on + strand, within DZA65_RS06455at 1344.853 kb on + strand, within DZA65_RS06455at 1344.854 kb on - strand, within DZA65_RS06455at 1344.854 kb on - strand, within DZA65_RS06455at 1344.957 kb on + strand, within DZA65_RS06455at 1344.957 kb on + strand, within DZA65_RS06455at 1344.958 kb on - strand, within DZA65_RS06455at 1344.990 kb on + strand, within DZA65_RS06455at 1344.990 kb on + strand, within DZA65_RS06455at 1344.990 kb on + strand, within DZA65_RS06455at 1344.991 kb on - strand, within DZA65_RS06455at 1344.991 kb on - strand, within DZA65_RS06455at 1345.027 kb on - strand, within DZA65_RS06455at 1345.071 kb on + strand, within DZA65_RS06455at 1345.072 kb on - strand, within DZA65_RS06455at 1345.072 kb on - strand, within DZA65_RS06455at 1345.072 kb on - strand, within DZA65_RS06455at 1345.118 kb on + strandat 1345.118 kb on + strandat 1345.118 kb on + strandat 1345.118 kb on + strandat 1345.118 kb on + strandat 1345.119 kb on - strandat 1345.119 kb on - strandat 1345.119 kb on - strandat 1345.119 kb on - strandat 1345.119 kb on - strandat 1345.119 kb on - strandat 1345.119 kb on - strandat 1345.119 kb on - strandat 1345.119 kb on - strandat 1345.143 kb on + strandat 1345.155 kb on + strandat 1345.156 kb on - strandat 1345.171 kb on + strandat 1345.171 kb on + strandat 1345.171 kb on + strandat 1345.172 kb on - strandat 1345.179 kb on + strandat 1345.179 kb on + strandat 1345.180 kb on - strandat 1345.180 kb on - strandat 1345.180 kb on - strandat 1345.186 kb on - strandat 1345.240 kb on + strandat 1345.240 kb on + strandat 1345.263 kb on + strandat 1345.263 kb on + strandat 1345.263 kb on + strandat 1345.263 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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1,343,624 + DZA65_RS06445 0.79 -0.8
1,343,625 - DZA65_RS06445 0.80 +0.6
1,343,651 + DZA65_RS06445 0.81 -0.7
1,343,701 + DZA65_RS06445 0.85 -1.6
1,343,701 + DZA65_RS06445 0.85 -0.7
1,343,701 + DZA65_RS06445 0.85 -1.4
1,343,701 + DZA65_RS06445 0.85 +0.9
1,343,702 - DZA65_RS06445 0.85 -0.7
1,343,702 - DZA65_RS06445 0.85 -1.4
1,343,702 - DZA65_RS06445 0.85 -1.1
1,343,702 - DZA65_RS06445 0.85 -1.7
1,343,713 - DZA65_RS06445 0.86 -0.1
1,343,745 + DZA65_RS06445 0.88 +0.4
1,343,758 + DZA65_RS06445 0.89 +1.9
1,343,874 + +0.6
1,343,874 + -1.1
1,343,924 + +1.1
1,343,931 + -0.8
1,344,019 + -1.1
1,344,019 + +0.2
1,344,019 + -0.7
1,344,020 - +0.3
1,344,020 - -0.5
1,344,081 + +1.7
1,344,082 - +0.2
1,344,178 + DZA65_RS06450 0.16 -2.5
1,344,178 + DZA65_RS06450 0.16 -1.1
1,344,178 + DZA65_RS06450 0.16 -1.9
1,344,178 + DZA65_RS06450 0.16 -1.2
1,344,178 + DZA65_RS06450 0.16 +0.9
1,344,178 + DZA65_RS06450 0.16 -0.9
1,344,179 - DZA65_RS06450 0.17 -1.4
1,344,179 - DZA65_RS06450 0.17 -0.7
1,344,179 - DZA65_RS06450 0.17 -0.2
1,344,179 - DZA65_RS06450 0.17 +1.9
1,344,179 - DZA65_RS06450 0.17 -1.1
1,344,214 + DZA65_RS06450 0.24 -0.1
1,344,215 - DZA65_RS06450 0.24 +0.5
1,344,215 - DZA65_RS06450 0.24 +0.1
1,344,222 + DZA65_RS06450 0.26 +0.5
1,344,222 + DZA65_RS06450 0.26 +0.9
1,344,222 + DZA65_RS06450 0.26 +0.9
1,344,222 + DZA65_RS06450 0.26 -0.7
1,344,222 + DZA65_RS06450 0.26 +4.1
1,344,222 + DZA65_RS06450 0.26 -0.3
1,344,222 + DZA65_RS06450 0.26 -0.1
1,344,223 - DZA65_RS06450 0.26 -0.9
1,344,223 - DZA65_RS06450 0.26 +0.6
1,344,235 + DZA65_RS06450 0.29 -2.1
1,344,307 + DZA65_RS06450 0.44 -0.5
1,344,307 + DZA65_RS06450 0.44 +1.2
1,344,307 + DZA65_RS06450 0.44 +0.9
1,344,307 + DZA65_RS06450 0.44 +0.5
1,344,308 - DZA65_RS06450 0.44 +0.9
1,344,308 - DZA65_RS06450 0.44 +3.2
1,344,308 - DZA65_RS06450 0.44 +0.4
1,344,308 - DZA65_RS06450 0.44 +2.2
1,344,308 - DZA65_RS06450 0.44 -0.1
1,344,308 - DZA65_RS06450 0.44 +0.3
1,344,326 - DZA65_RS06450 0.48 +1.5
1,344,361 + DZA65_RS06450 0.56 -0.7
1,344,362 - DZA65_RS06450 0.56 +0.4
1,344,362 - DZA65_RS06450 0.56 +0.3
1,344,456 + DZA65_RS06450 0.76 -1.7
1,344,457 - DZA65_RS06450 0.76 +1.1
1,344,462 + DZA65_RS06450 0.77 +0.2
1,344,462 + DZA65_RS06450 0.77 -0.1
1,344,462 + DZA65_RS06450 0.77 -2.1
1,344,462 + +1.5
1,344,462 + DZA65_RS06450 0.77 +0.5
1,344,462 + DZA65_RS06450 0.77 +0.9
1,344,462 + DZA65_RS06450 0.77 +0.9
1,344,462 + DZA65_RS06450 0.77 +0.4
1,344,462 + DZA65_RS06450 0.77 -1.4
1,344,462 + DZA65_RS06450 0.77 +2.7
1,344,462 + DZA65_RS06450 0.77 +0.1
1,344,462 + DZA65_RS06450 0.77 -1.0
1,344,462 + DZA65_RS06450 0.77 -2.7
1,344,462 + DZA65_RS06450 0.77 -0.5
1,344,463 - DZA65_RS06450 0.77 +0.9
1,344,463 - DZA65_RS06450 0.77 -0.4
1,344,463 - DZA65_RS06450 0.77 -0.4
1,344,463 - DZA65_RS06450 0.77 -0.5
1,344,463 - DZA65_RS06450 0.77 -0.2
1,344,499 + DZA65_RS06450 0.85 +0.3
1,344,499 + DZA65_RS06450 0.85 -0.2
1,344,499 + DZA65_RS06450 0.85 -0.7
1,344,499 + DZA65_RS06450 0.85 +0.3
1,344,500 - DZA65_RS06450 0.85 +0.7
1,344,500 - DZA65_RS06450 0.85 -3.0
1,344,529 + -2.1
1,344,530 - -2.4
1,344,544 + +0.1
1,344,572 + +0.9
1,344,572 + -1.1
1,344,573 - -1.1
1,344,602 + +1.8
1,344,603 - -0.3
1,344,603 - -0.1
1,344,615 + +1.1
1,344,616 - +1.1
1,344,618 + +0.5
1,344,618 + -2.1
1,344,618 + +0.5
1,344,619 - +0.6
1,344,619 - -0.2
1,344,619 - +1.9
1,344,642 + DZA65_RS06455 0.12 +1.1
1,344,642 + DZA65_RS06455 0.12 -2.4
1,344,642 + DZA65_RS06455 0.12 -2.1
1,344,642 + DZA65_RS06455 0.12 +0.7
1,344,642 + DZA65_RS06455 0.12 +0.5
1,344,643 - DZA65_RS06455 0.13 +0.2
1,344,643 - DZA65_RS06455 0.13 +0.5
1,344,643 - DZA65_RS06455 0.13 +1.3
1,344,643 - DZA65_RS06455 0.13 -0.9
1,344,643 - DZA65_RS06455 0.13 +0.1
1,344,643 - DZA65_RS06455 0.13 +0.3
1,344,643 - DZA65_RS06455 0.13 -0.4
1,344,643 - DZA65_RS06455 0.13 -1.2
1,344,646 + DZA65_RS06455 0.13 +0.3
1,344,646 + DZA65_RS06455 0.13 -0.7
1,344,646 + DZA65_RS06455 0.13 +0.6
1,344,646 + DZA65_RS06455 0.13 -1.8
1,344,646 + DZA65_RS06455 0.13 +0.5
1,344,646 + DZA65_RS06455 0.13 -0.2
1,344,646 + DZA65_RS06455 0.13 -1.6
1,344,646 + DZA65_RS06455 0.13 -1.2
1,344,646 + DZA65_RS06455 0.13 -0.1
1,344,646 + DZA65_RS06455 0.13 -0.4
1,344,646 + DZA65_RS06455 0.13 +1.1
1,344,646 + DZA65_RS06455 0.13 +1.2
1,344,646 + DZA65_RS06455 0.13 -0.3
1,344,646 + DZA65_RS06455 0.13 -0.1
1,344,646 + DZA65_RS06455 0.13 -0.1
1,344,647 - DZA65_RS06455 0.13 +1.8
1,344,647 - DZA65_RS06455 0.13 -0.1
1,344,647 - DZA65_RS06455 0.13 +0.9
1,344,647 - DZA65_RS06455 0.13 +1.5
1,344,647 - DZA65_RS06455 0.13 -1.1
1,344,669 + DZA65_RS06455 0.17 -0.3
1,344,669 + DZA65_RS06455 0.17 +0.9
1,344,669 + DZA65_RS06455 0.17 -0.1
1,344,670 - DZA65_RS06455 0.17 -0.1
1,344,716 + DZA65_RS06455 0.25 -0.9
1,344,716 + DZA65_RS06455 0.25 +2.9
1,344,716 + DZA65_RS06455 0.25 -1.1
1,344,716 + DZA65_RS06455 0.25 -1.9
1,344,716 + DZA65_RS06455 0.25 -1.1
1,344,716 + DZA65_RS06455 0.25 -1.9
1,344,716 + DZA65_RS06455 0.25 -1.7
1,344,716 + DZA65_RS06455 0.25 +0.5
1,344,716 + DZA65_RS06455 0.25 -1.7
1,344,716 + DZA65_RS06455 0.25 -1.2
1,344,717 - DZA65_RS06455 0.26 +0.2
1,344,717 - DZA65_RS06455 0.26 +0.1
1,344,717 - DZA65_RS06455 0.26 -1.1
1,344,717 - DZA65_RS06455 0.26 +1.9
1,344,717 - DZA65_RS06455 0.26 -0.4
1,344,717 - DZA65_RS06455 0.26 +1.2
1,344,717 - DZA65_RS06455 0.26 -0.1
1,344,717 - DZA65_RS06455 0.26 -0.2
1,344,733 - DZA65_RS06455 0.28 +0.2
1,344,804 + DZA65_RS06455 0.41 +0.5
1,344,805 - DZA65_RS06455 0.41 -0.3
1,344,853 + DZA65_RS06455 0.49 +0.8
1,344,853 + DZA65_RS06455 0.49 +0.9
1,344,854 - DZA65_RS06455 0.50 -1.1
1,344,854 - DZA65_RS06455 0.50 -2.9
1,344,957 + DZA65_RS06455 0.68 -0.2
1,344,957 + DZA65_RS06455 0.68 -1.7
1,344,958 - DZA65_RS06455 0.68 -0.7
1,344,990 + DZA65_RS06455 0.74 -0.5
1,344,990 + DZA65_RS06455 0.74 -0.8
1,344,990 + DZA65_RS06455 0.74 +1.7
1,344,991 - DZA65_RS06455 0.74 +2.2
1,344,991 - DZA65_RS06455 0.74 -3.5
1,345,027 - DZA65_RS06455 0.80 -0.3
1,345,071 + DZA65_RS06455 0.88 -0.2
1,345,072 - DZA65_RS06455 0.88 -0.7
1,345,072 - DZA65_RS06455 0.88 +0.9
1,345,072 - DZA65_RS06455 0.88 +1.2
1,345,118 + -1.4
1,345,118 + +0.4
1,345,118 + +0.3
1,345,118 + +0.1
1,345,118 + -1.4
1,345,119 - -0.1
1,345,119 - -1.4
1,345,119 - -0.2
1,345,119 - -0.5
1,345,119 - +0.3
1,345,119 - -1.1
1,345,119 - +1.2
1,345,119 - +1.7
1,345,119 - -0.7
1,345,143 + +0.6
1,345,155 + +0.1
1,345,156 - -0.5
1,345,171 + +1.2
1,345,171 + +1.3
1,345,171 + -0.3
1,345,172 - -0.1
1,345,179 + +0.9
1,345,179 + +0.3
1,345,180 - +1.9
1,345,180 - -0.7
1,345,180 - +0.7
1,345,186 - -0.8
1,345,240 + -0.9
1,345,240 + -0.7
1,345,263 + +0.2
1,345,263 + -2.2
1,345,263 + -0.1
1,345,263 + +0.6

Or see this region's nucleotide sequence