Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05910

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS05905 and DZA65_RS05910 overlap by 20 nucleotidesDZA65_RS05910 and DZA65_RS05915 are separated by 86 nucleotides DZA65_RS05905: DZA65_RS05905 - thiamine-phosphate kinase, at 1,217,885 to 1,218,859 _RS05905 DZA65_RS05910: DZA65_RS05910 - phosphatidylglycerophosphatase A, at 1,218,840 to 1,219,352 _RS05910 DZA65_RS05915: DZA65_RS05915 - 1-deoxy-D-xylulose-5-phosphate synthase, at 1,219,439 to 1,221,301 _RS05915 Position (kb) 1218 1219 1220Strain fitness (log2 ratio) -2 -1 0 1 2at 1217.865 kb on + strandat 1219.341 kb on + strandat 1219.341 kb on + strandat 1219.341 kb on + strandat 1219.341 kb on + strandat 1219.341 kb on + strandat 1219.368 kb on - strandat 1219.368 kb on - strandat 1219.368 kb on - strandat 1219.369 kb on + strandat 1219.370 kb on - strandat 1219.370 kb on - strandat 1219.403 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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1,217,865 + -1.9
1,219,341 + +1.9
1,219,341 + -0.1
1,219,341 + -1.4
1,219,341 + -0.7
1,219,341 + +0.7
1,219,368 - -1.0
1,219,368 - -0.1
1,219,368 - +0.6
1,219,369 + -1.1
1,219,370 - +0.9
1,219,370 - +1.6
1,219,403 - -1.4

Or see this region's nucleotide sequence