Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05365

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
1,103,266	+		DZA65_RS05360	0.19	+2.5
1,103,266	+		DZA65_RS05360	0.19	-0.9
1,103,275	-		DZA65_RS05360	0.20	+0.9
1,103,301	+		DZA65_RS05360	0.22	+0.3
1,103,400	+		DZA65_RS05360	0.31	-1.4
1,103,410	+		DZA65_RS05360	0.31	-2.4
1,103,410	+		DZA65_RS05360	0.31	-2.2
1,103,410	+		DZA65_RS05360	0.31	+0.6
1,103,410	+		DZA65_RS05360	0.31	-0.2
1,103,410	+		DZA65_RS05360	0.31	+0.2
1,103,410	+		DZA65_RS05360	0.31	-0.7
1,103,410	+		DZA65_RS05360	0.31	-1.7
1,103,410	+		DZA65_RS05360	0.31	-0.4
1,103,410	+		DZA65_RS05360	0.31	+0.1
1,103,411	-		DZA65_RS05360	0.32	+0.5
1,103,411	-		DZA65_RS05360	0.32	-0.5
1,103,411	-		DZA65_RS05360	0.32	+1.9
1,103,411	-		DZA65_RS05360	0.32	+1.2
1,103,411	-		DZA65_RS05360	0.32	-3.9
1,103,411	-		DZA65_RS05360	0.32	-1.4
1,103,411	-		DZA65_RS05360	0.32	+0.7
1,103,411	-		DZA65_RS05360	0.32	-0.2
1,103,411	-		DZA65_RS05360	0.32	-1.8
1,103,411	-		DZA65_RS05360	0.32	-1.0
1,103,411	-		DZA65_RS05360	0.32	-1.7
1,103,467	+		DZA65_RS05360	0.36	+0.1
1,103,467	+		DZA65_RS05360	0.36	-2.1
1,103,468	-		DZA65_RS05360	0.36	-1.4
1,103,468	-		DZA65_RS05360	0.36	-0.8
1,103,468	-		DZA65_RS05360	0.36	-1.1
1,103,468	-		DZA65_RS05360	0.36	+0.3
1,103,468	-		DZA65_RS05360	0.36	-0.4
1,103,521	+		DZA65_RS05360	0.41	+0.2
1,103,521	+				-1.1
1,103,521	+		DZA65_RS05360	0.41	-0.7
1,103,521	+		DZA65_RS05360	0.41	-1.9
1,103,521	+		DZA65_RS05360	0.41	+3.6
1,103,522	-		DZA65_RS05360	0.41	-0.4
1,103,522	-		DZA65_RS05360	0.41	+0.4
1,103,522	-		DZA65_RS05360	0.41	+1.9
1,103,609	-		DZA65_RS05360	0.49	+0.0
1,103,609	-		DZA65_RS05360	0.49	-0.2
1,103,609	-		DZA65_RS05360	0.49	-1.4
1,103,609	-		DZA65_RS05360	0.49	+0.9
1,103,682	+		DZA65_RS05360	0.55	+0.0
1,103,767	-		DZA65_RS05360	0.62	+0.3
1,103,767	-		DZA65_RS05360	0.62	+0.9
1,103,767	-		DZA65_RS05360	0.62	-0.5
1,103,790	-		DZA65_RS05360	0.64	+0.3
1,103,790	-		DZA65_RS05360	0.64	-1.2
1,103,790	-		DZA65_RS05360	0.64	-0.7
1,103,790	-		DZA65_RS05360	0.64	-1.4
1,103,790	-		DZA65_RS05360	0.64	-0.4
1,103,820	+		DZA65_RS05360	0.67	-1.4
1,103,820	+		DZA65_RS05360	0.67	+0.4
1,103,821	-		DZA65_RS05360	0.67	-0.2
1,103,950	-		DZA65_RS05360	0.78	+1.9
1,103,974	+		DZA65_RS05360	0.80	+0.1
1,103,974	+		DZA65_RS05360	0.80	+0.4
1,103,974	+		DZA65_RS05360	0.80	+0.7
1,103,975	-		DZA65_RS05360	0.80	-0.7
1,103,975	-		DZA65_RS05360	0.80	+0.3
1,103,975	-		DZA65_RS05360	0.80	-0.5
1,103,987	+		DZA65_RS05360	0.81	-0.1
1,104,036	+		DZA65_RS05360	0.86	+0.3
1,104,036	+		DZA65_RS05360	0.86	-0.1
1,104,040	+		DZA65_RS05360	0.86	+0.1
1,104,040	+		DZA65_RS05360	0.86	-0.9
1,104,040	+		DZA65_RS05360	0.86	+1.3
1,104,041	-		DZA65_RS05360	0.86	+0.2
1,104,041	-		DZA65_RS05360	0.86	+1.3
1,104,041	-		DZA65_RS05360	0.86	+0.5
1,104,041	-				+1.6
1,104,041	-		DZA65_RS05360	0.86	+1.6
1,104,041	-		DZA65_RS05360	0.86	-0.6
1,104,041	-		DZA65_RS05360	0.86	+0.9
1,104,051	-		DZA65_RS05360	0.87	-0.5
1,104,082	+		DZA65_RS05360	0.90	+1.9
1,104,082	+		DZA65_RS05360	0.90	-0.4
1,104,135	+				+2.9
1,104,136	-				-0.9
1,104,136	-				-1.4
1,104,136	-				-0.9
1,104,136	-				-0.4
1,104,200	-				+1.9
1,104,200	-				-0.5
1,104,200	-				-0.8
1,104,382	+		DZA65_RS05365	0.12	-0.2
1,104,383	-		DZA65_RS05365	0.12	-0.6
1,104,383	-		DZA65_RS05365	0.12	+0.5
1,104,383	-		DZA65_RS05365	0.12	-1.9
1,104,391	+		DZA65_RS05365	0.13	-1.4
1,104,391	+		DZA65_RS05365	0.13	-1.1
1,104,391	+		DZA65_RS05365	0.13	-2.1
1,104,392	-		DZA65_RS05365	0.13	-1.3
1,104,410	-		DZA65_RS05365	0.14	-1.1
1,104,432	+		DZA65_RS05365	0.17	-1.5
1,104,432	+		DZA65_RS05365	0.17	-1.7
1,104,432	+		DZA65_RS05365	0.17	-0.4
1,104,433	-		DZA65_RS05365	0.17	-0.1
1,104,433	-		DZA65_RS05365	0.17	-0.4
1,104,433	-		DZA65_RS05365	0.17	-1.4
1,104,433	-		DZA65_RS05365	0.17	+0.2
1,104,710	+		DZA65_RS05365	0.44	+0.9
1,104,798	-		DZA65_RS05365	0.53	-0.9
1,104,828	-		DZA65_RS05365	0.56	+0.0
1,104,905	+		DZA65_RS05365	0.63	+0.1
1,104,905	+		DZA65_RS05365	0.63	+0.3
1,104,905	+		DZA65_RS05365	0.63	+1.6
1,104,906	-		DZA65_RS05365	0.63	-1.9
1,104,906	-		DZA65_RS05365	0.63	-1.2
1,104,906	-		DZA65_RS05365	0.63	+2.5
1,104,910	+		DZA65_RS05365	0.64	-1.7
1,104,910	+		DZA65_RS05365	0.64	-2.1
1,105,013	+		DZA65_RS05365	0.74	+1.7
1,105,109	+		DZA65_RS05365	0.83	+1.4
1,105,110	-		DZA65_RS05365	0.83	-0.1
1,105,176	-				-1.1
1,105,176	-				+0.2
1,105,177	+				-1.2
1,105,177	+				-1.1
1,105,177	+				-1.1
1,105,177	+				+0.6
1,105,177	+				+1.2
1,105,178	-				+0.2
1,105,178	-				-1.9
1,105,178	-				+0.9
1,105,184	+				+0.5
1,105,184	+				-1.4
1,105,185	-				-0.2
1,105,252	+				+0.4
1,105,252	+				-1.1
1,105,252	+				+0.5
1,105,253	-				+0.8
1,105,253	-				+1.3
1,105,264	-				+0.6
1,105,290	+				+0.7
1,105,290	+				+0.8
1,105,290	+				+0.0
1,105,290	+				+0.2
1,105,290	+				+0.4
1,105,291	-				-0.0
1,105,291	-				-1.1
1,105,291	-				-0.1
1,105,291	-				-0.7
1,105,291	-				+1.3
1,105,291	-				-0.4
1,105,291	-				-0.9
1,105,291	-				-3.0
1,105,291	-				-0.3
1,105,291	-				-0.8
1,105,296	+				-0.1
1,105,296	+				+0.3
1,105,297	-				-1.2
1,105,297	-				-0.7
1,105,301	+				-1.7
1,105,301	+				+0.9
1,105,302	-				-1.6
1,105,302	-				-0.7
1,105,376	+		DZA65_RS05370	0.17	-1.9
1,105,377	-		DZA65_RS05370	0.17	-0.1
1,105,377	-		DZA65_RS05370	0.17	-0.1
1,105,465	+		DZA65_RS05370	0.37	-0.7
1,105,465	+		DZA65_RS05370	0.37	+0.3
1,105,465	+		DZA65_RS05370	0.37	-1.2
1,105,465	+		DZA65_RS05370	0.37	-0.8
1,105,466	-		DZA65_RS05370	0.37	-1.7
1,105,466	-		DZA65_RS05370	0.37	+1.1
1,105,521	-		DZA65_RS05370	0.49	+1.4
1,105,521	-		DZA65_RS05370	0.49	-1.0
1,105,550	+		DZA65_RS05370	0.56	-1.1
1,105,550	+		DZA65_RS05370	0.56	+0.3
1,105,610	+		DZA65_RS05370	0.69	-2.1
1,105,625	-		DZA65_RS05370	0.73	+1.2
1,105,638	+		DZA65_RS05370	0.76	+3.8
1,105,639	-		DZA65_RS05370	0.76	-2.7
1,105,639	-		DZA65_RS05370	0.76	-1.7
1,105,639	-		DZA65_RS05370	0.76	-0.2
1,105,639	-		DZA65_RS05370	0.76	-1.4
1,105,667	+		DZA65_RS05370	0.82	+0.1
1,105,667	+		DZA65_RS05370	0.82	-0.4
1,105,667	+		DZA65_RS05370	0.82	+0.1
1,105,668	-		DZA65_RS05370	0.82	-1.1
1,105,668	-		DZA65_RS05370	0.82	-0.8
1,105,668	-				-2.1
1,105,677	+		DZA65_RS05370	0.84	-2.2
1,105,772	-				-1.1
1,105,772	-				+0.6
1,105,788	+				-0.4
1,105,789	-				-1.4
1,105,831	+				-1.7
1,105,832	-				-0.9
1,105,835	+				+1.9
1,105,835	+				+0.9
1,105,835	+				-1.2
1,105,835	+				+0.1
1,105,836	-				+1.9
1,105,836	-				+0.4
1,105,836	-				-0.2
1,105,849	+				-1.4
1,105,850	-				-0.9
1,105,850	-				-2.0
1,105,989	-				+1.7
1,105,989	-				-1.1
1,106,006	+				+1.7
1,106,006	+				+1.9
1,106,006	+				-1.1
1,106,006	+				-1.1
1,106,006	+				-0.3
1,106,007	-				-1.4
1,106,007	-				+0.1
1,106,007	-				-1.1
1,106,007	-				+0.2
1,106,007	-				+1.1
1,106,007	-				-1.4
1,106,011	-				+0.2
1,106,011	-				-0.1
1,106,011	-				-0.1
1,106,039	+				-0.4
1,106,040	-				+2.5
1,106,040	-				-0.4
1,106,040	-				-1.9