Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05260

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
1,080,630	-		DZA65_RS05250	0.38	+1.2
1,080,631	+		DZA65_RS05250	0.38	-0.9
1,080,631	+		DZA65_RS05250	0.38	-1.9
1,080,631	+		DZA65_RS05250	0.38	+0.9
1,080,631	+		DZA65_RS05250	0.38	-0.7
1,080,631	+		DZA65_RS05250	0.38	-0.1
1,080,632	-		DZA65_RS05250	0.39	-0.7
1,080,632	-		DZA65_RS05250	0.39	+0.3
1,080,632	-		DZA65_RS05250	0.39	-1.1
1,080,632	-		DZA65_RS05250	0.39	+2.1
1,080,632	-		DZA65_RS05250	0.39	+0.3
1,080,632	-				+1.3
1,080,632	-		DZA65_RS05250	0.39	+0.7
1,080,632	-				+1.9
1,080,809	+		DZA65_RS05250	0.63	-3.4
1,080,809	+		DZA65_RS05250	0.63	+1.3
1,080,810	-		DZA65_RS05250	0.63	+1.2
1,080,903	+		DZA65_RS05250	0.76	-1.7
1,080,903	+		DZA65_RS05250	0.76	-0.7
1,080,914	+		DZA65_RS05250	0.78	+0.4
1,080,914	+		DZA65_RS05250	0.78	-0.4
1,080,914	+		DZA65_RS05250	0.78	-2.4
1,080,914	+		DZA65_RS05250	0.78	-0.7
1,080,914	+		DZA65_RS05250	0.78	+0.2
1,080,915	-		DZA65_RS05250	0.78	+1.7
1,080,915	-		DZA65_RS05250	0.78	+1.9
1,080,915	-		DZA65_RS05250	0.78	+0.1
1,080,915	-		DZA65_RS05250	0.78	-1.4
1,080,915	-		DZA65_RS05250	0.78	-1.7
1,080,915	-		DZA65_RS05250	0.78	-1.4
1,080,915	-		DZA65_RS05250	0.78	-3.0
1,080,915	-		DZA65_RS05250	0.78	-0.0
1,080,915	-		DZA65_RS05250	0.78	+1.1
1,080,965	+		DZA65_RS05250	0.85	+0.1
1,080,965	+		DZA65_RS05250	0.85	-0.0
1,080,966	-		DZA65_RS05250	0.85	-0.3
1,080,966	-		DZA65_RS05250	0.85	+1.9
1,080,966	-		DZA65_RS05250	0.85	+0.5
1,080,966	-		DZA65_RS05250	0.85	+0.3
1,080,972	+		DZA65_RS05250	0.86	-0.3
1,080,972	+		DZA65_RS05250	0.86	-0.7
1,080,972	+		DZA65_RS05250	0.86	-0.7
1,080,972	+		DZA65_RS05250	0.86	-1.4
1,080,972	+		DZA65_RS05250	0.86	+0.6
1,080,973	-		DZA65_RS05250	0.86	-0.5
1,080,973	-		DZA65_RS05250	0.86	-0.1
1,080,973	-		DZA65_RS05250	0.86	+0.1
1,080,973	-		DZA65_RS05250	0.86	-0.4
1,081,072	-				+0.3
1,081,079	-				-0.4
1,081,099	-				-1.4
1,081,102	+				+0.3
1,081,103	-				+0.9
1,081,103	-				+1.9
1,081,260	+		DZA65_RS05255	0.54	+2.3
1,081,260	+		DZA65_RS05255	0.54	-0.9
1,081,261	-		DZA65_RS05255	0.54	+0.3
1,081,261	-		DZA65_RS05255	0.54	-0.3
1,081,261	-		DZA65_RS05255	0.54	-2.5
1,081,261	-		DZA65_RS05255	0.54	-1.8
1,081,330	+		DZA65_RS05255	0.74	+1.9
1,081,330	+		DZA65_RS05255	0.74	+1.5
1,081,330	+		DZA65_RS05255	0.74	-1.0
1,081,330	+		DZA65_RS05255	0.74	-0.9
1,081,331	-		DZA65_RS05255	0.75	+2.5
1,081,331	-		DZA65_RS05255	0.75	-2.7
1,081,331	-		DZA65_RS05255	0.75	-0.7
1,081,331	-		DZA65_RS05255	0.75	+0.2
1,081,331	-		DZA65_RS05255	0.75	-1.9
1,081,384	+				-0.1
1,081,384	+				-0.5
1,081,384	+				-0.7
1,081,445	-				+0.7
1,081,529	+				+0.4
1,081,529	+				-1.1
1,081,529	+				+2.1
1,081,529	+				+1.2
1,081,529	+				-2.7
1,081,529	+				-0.5
1,081,530	-				+0.5
1,081,530	-				+0.8
1,081,530	-				+1.6
1,081,530	-				-0.1
1,081,530	-				+0.9
1,081,538	+				-0.7
1,081,539	-				-0.7
1,081,539	-				+0.2
1,081,590	+				-0.1
1,081,590	+				-1.4
1,081,590	+				+1.0
1,081,693	+		DZA65_RS05260	0.23	-0.9
1,081,693	+		DZA65_RS05260	0.23	-1.1
1,081,693	+		DZA65_RS05260	0.23	+0.2
1,081,693	+		DZA65_RS05260	0.23	-0.5
1,081,693	+		DZA65_RS05260	0.23	-1.2
1,081,694	-		DZA65_RS05260	0.23	-0.3
1,081,694	-		DZA65_RS05260	0.23	-0.3
1,081,694	-		DZA65_RS05260	0.23	-1.0
1,081,694	-		DZA65_RS05260	0.23	+0.7
1,081,694	-		DZA65_RS05260	0.23	-0.7
1,081,694	-		DZA65_RS05260	0.23	-0.7
1,081,694	-		DZA65_RS05260	0.23	+0.4
1,081,694	-		DZA65_RS05260	0.23	-0.7
1,081,752	+		DZA65_RS05260	0.31	+0.1
1,081,753	-		DZA65_RS05260	0.31	-1.7
1,081,868	+		DZA65_RS05260	0.47	+1.7
1,081,869	-		DZA65_RS05260	0.47	-1.2
1,081,869	-		DZA65_RS05260	0.47	-1.9
1,081,869	-		DZA65_RS05260	0.47	-2.1
1,081,906	+		DZA65_RS05260	0.52	+1.6
1,081,907	-		DZA65_RS05260	0.53	-0.6
1,081,907	-		DZA65_RS05260	0.53	+0.9
1,081,928	+		DZA65_RS05260	0.56	-0.3
1,081,973	+		DZA65_RS05260	0.62	-0.8
1,082,185	+				+0.9
1,082,185	+				-0.4
1,082,185	+				-1.1
1,082,185	+				+0.9
1,082,185	+				-1.9
1,082,185	+				+0.3
1,082,185	+				-0.1
1,082,185	+				+0.6
1,082,185	+				-1.4
1,082,185	+				-0.7
1,082,185	+				-3.2
1,082,185	+				+2.7
1,082,185	+				-1.1
1,082,185	+				-0.8
1,082,185	+				-1.7
1,082,185	+				+1.2
1,082,186	-				-1.1
1,082,186	-				+0.8
1,082,186	-				-0.9
1,082,186	-				+0.0
1,082,186	-				-0.5
1,082,186	-				+0.9
1,082,186	-				+0.3
1,082,186	-				+1.1
1,082,186	-				+0.8
1,082,186	-				+1.1
1,082,186	-				-0.1
1,082,186	-				-2.9
1,082,186	-				+0.2
1,082,186	-				-2.1
1,082,186	-				+0.9
1,082,186	-				-0.2
1,082,189	+				+0.7
1,082,255	-				-1.5
1,082,255	-				-0.1
1,082,257	+				+0.2
1,082,257	+				+1.3
1,082,257	+				-1.2
1,082,270	-				+0.9
1,082,270	-				-2.8
1,082,336	-				-0.9
1,082,458	-				+1.8
1,082,512	+				-0.8
1,082,512	+				-1.1
1,082,561	-				-1.1
1,082,561	-				-1.1
1,082,561	-				-1.9
1,082,571	+				-0.5
1,082,571	+				-0.6
1,082,571	+				-0.1
1,082,571	+				-0.1
1,082,572	-				+0.1
1,082,572	-				+1.7
1,082,612	+				-0.5
1,082,718	+				+1.4
1,082,800	-				+0.3
1,082,801	+				-2.1
1,082,838	+				-1.1
1,082,851	-				-0.7
1,082,851	-				-1.4
1,082,870	+				+1.5
1,082,870	+				-2.5
1,082,871	-				-0.1
1,082,900	+				-0.7
1,082,903	+				-1.8
1,082,903	+				-0.9
1,082,903	+				-1.7
1,082,904	-				+0.6
1,082,950	+				+1.3
1,082,950	+				-1.5
1,082,950	+				-0.7
1,082,950	+				+0.6
1,082,950	+				+1.2
1,082,951	-				-1.4
1,082,951	-				-1.1
1,082,951	-				-0.3
1,082,952	+				-0.7
1,082,952	+				-0.1
1,082,952	+				-0.3
1,082,952	+				-1.1
1,082,952	+				+1.8
1,082,952	+				-0.9
1,082,952	+				+0.5
1,082,953	-				-2.1
1,082,953	-				+1.3
1,082,953	-				+2.3
1,082,953	-				-0.7
1,082,958	+				-1.1
1,083,202	+		DZA65_RS05265	0.15	-0.9
1,083,202	+		DZA65_RS05265	0.15	+1.6
1,083,202	+		DZA65_RS05265	0.15	-2.8
1,083,202	+		DZA65_RS05265	0.15	-1.7
1,083,202	+		DZA65_RS05265	0.15	+1.7
1,083,203	-		DZA65_RS05265	0.15	-1.5
1,083,203	-		DZA65_RS05265	0.15	-2.4
1,083,203	-		DZA65_RS05265	0.15	-2.1
1,083,203	-		DZA65_RS05265	0.15	-1.3
1,083,203	-		DZA65_RS05265	0.15	-2.1
1,083,204	+		DZA65_RS05265	0.15	+0.1
1,083,205	-		DZA65_RS05265	0.15	-0.8
1,083,205	-		DZA65_RS05265	0.15	-0.1
1,083,218	+		DZA65_RS05265	0.16	+1.3
1,083,234	+		DZA65_RS05265	0.16	-1.7
1,083,235	-		DZA65_RS05265	0.16	+0.6