Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04125 and DZA65_RS04130 overlap by 14 nucleotides DZA65_RS04130 and DZA65_RS04135 overlap by 1 nucleotides DZA65_RS04135 and DZA65_RS04145 are separated by 132 nucleotides DZA65_RS04145 and DZA65_RS04155 are separated by 187 nucleotides
DZA65_RS04125: DZA65_RS04125 - holin, at 869,023 to 869,328
_RS04125
DZA65_RS04130: DZA65_RS04130 - M15 family metallopeptidase, at 869,315 to 869,656
_RS04130
DZA65_RS04135: DZA65_RS04135 - hypothetical protein, at 869,656 to 870,012
_RS04135
DZA65_RS04145: DZA65_RS04145 - hypothetical protein, at 870,145 to 870,402
_RS04145
DZA65_RS04155: DZA65_RS04155 - phage tail tape measure protein, at 870,590 to 872,554
_RS04155
Position (kb) 870
871 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 869.322 kb on + strand at 869.322 kb on + strand at 869.322 kb on + strand at 869.323 kb on - strand at 869.323 kb on - strand at 869.323 kb on - strand at 869.323 kb on - strand at 869.323 kb on - strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.340 kb on + strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.341 kb on - strand at 869.345 kb on - strand at 869.415 kb on - strand, within DZA65_RS04130 at 869.415 kb on - strand, within DZA65_RS04130 at 869.479 kb on + strand, within DZA65_RS04130 at 869.480 kb on - strand, within DZA65_RS04130 at 869.480 kb on - strand, within DZA65_RS04130 at 869.525 kb on + strand, within DZA65_RS04130 at 869.546 kb on + strand, within DZA65_RS04130 at 869.546 kb on + strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.547 kb on - strand, within DZA65_RS04130 at 869.564 kb on + strand, within DZA65_RS04130 at 869.602 kb on + strand, within DZA65_RS04130 at 869.602 kb on + strand, within DZA65_RS04130 at 869.630 kb on - strand at 869.630 kb on - strand at 869.649 kb on + strand at 869.650 kb on - strand at 869.667 kb on - strand at 869.667 kb on - strand at 869.798 kb on + strand, within DZA65_RS04135 at 869.799 kb on - strand, within DZA65_RS04135 at 869.853 kb on - strand, within DZA65_RS04135 at 869.868 kb on + strand, within DZA65_RS04135 at 869.869 kb on - strand, within DZA65_RS04135 at 869.869 kb on - strand, within DZA65_RS04135 at 869.869 kb on - strand, within DZA65_RS04135 at 869.904 kb on + strand, within DZA65_RS04135 at 869.905 kb on - strand, within DZA65_RS04135 at 869.941 kb on + strand, within DZA65_RS04135 at 869.941 kb on + strand, within DZA65_RS04135 at 869.942 kb on - strand, within DZA65_RS04135 at 869.942 kb on - strand, within DZA65_RS04135 at 869.975 kb on + strand, within DZA65_RS04135 at 869.975 kb on + strand, within DZA65_RS04135 at 870.024 kb on + strand at 870.112 kb on - strand at 870.156 kb on + strand at 870.161 kb on + strand at 870.198 kb on + strand, within DZA65_RS04145 at 870.209 kb on - strand, within DZA65_RS04145 at 870.223 kb on - strand, within DZA65_RS04145 at 870.243 kb on + strand, within DZA65_RS04145 at 870.244 kb on - strand, within DZA65_RS04145 at 870.244 kb on - strand, within DZA65_RS04145 at 870.265 kb on + strand, within DZA65_RS04145 at 870.265 kb on + strand, within DZA65_RS04145 at 870.265 kb on + strand, within DZA65_RS04145 at 870.345 kb on + strand, within DZA65_RS04145 at 870.368 kb on - strand, within DZA65_RS04145 at 870.465 kb on + strand at 870.470 kb on - strand at 870.524 kb on + strand at 870.524 kb on + strand at 870.525 kb on - strand at 870.525 kb on - strand at 870.539 kb on + strand at 870.545 kb on + strand at 870.545 kb on + strand at 870.546 kb on - strand at 870.578 kb on - strand at 870.578 kb on - strand at 870.612 kb on + strand at 870.612 kb on + strand at 870.613 kb on - strand at 870.613 kb on - strand at 870.613 kb on - strand at 870.613 kb on - strand at 870.613 kb on - strand at 870.613 kb on - strand at 870.625 kb on + strand at 870.626 kb on - strand at 870.626 kb on - strand at 870.727 kb on + strand at 870.727 kb on + strand at 870.727 kb on + strand at 870.728 kb on - strand at 870.739 kb on + strand at 870.739 kb on + strand at 870.739 kb on + strand at 870.739 kb on + strand at 870.739 kb on + strand at 870.739 kb on + strand at 870.739 kb on + strand at 870.740 kb on - strand at 870.740 kb on - strand at 870.740 kb on - strand at 870.740 kb on - strand at 870.740 kb on - strand at 870.740 kb on - strand at 870.745 kb on + strand at 870.746 kb on - strand at 870.839 kb on - strand, within DZA65_RS04155 at 870.839 kb on - strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.890 kb on + strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 870.891 kb on - strand, within DZA65_RS04155 at 871.070 kb on - strand, within DZA65_RS04155 at 871.109 kb on + strand, within DZA65_RS04155 at 871.109 kb on + strand, within DZA65_RS04155 at 871.109 kb on + strand, within DZA65_RS04155 at 871.109 kb on + strand, within DZA65_RS04155 at 871.109 kb on + strand, within DZA65_RS04155 at 871.109 kb on + strand, within DZA65_RS04155 at 871.110 kb on - strand, within DZA65_RS04155 at 871.110 kb on - strand, within DZA65_RS04155 at 871.110 kb on - strand, within DZA65_RS04155 at 871.111 kb on + strand, within DZA65_RS04155 at 871.111 kb on + strand, within DZA65_RS04155 at 871.111 kb on + strand, within DZA65_RS04155 at 871.111 kb on + strand, within DZA65_RS04155 at 871.111 kb on + strand at 871.111 kb on + strand, within DZA65_RS04155 at 871.112 kb on - strand, within DZA65_RS04155 at 871.112 kb on - strand, within DZA65_RS04155 at 871.112 kb on - strand, within DZA65_RS04155 at 871.112 kb on - strand, within DZA65_RS04155 at 871.112 kb on - strand, within DZA65_RS04155 at 871.112 kb on - strand, within DZA65_RS04155 at 871.117 kb on + strand, within DZA65_RS04155 at 871.118 kb on - strand, within DZA65_RS04155 at 871.147 kb on + strand, within DZA65_RS04155 at 871.187 kb on + strand, within DZA65_RS04155 at 871.187 kb on + strand, within DZA65_RS04155 at 871.187 kb on + strand, within DZA65_RS04155 at 871.187 kb on + strand, within DZA65_RS04155 at 871.187 kb on + strand, within DZA65_RS04155 at 871.188 kb on - strand, within DZA65_RS04155 at 871.188 kb on - strand, within DZA65_RS04155 at 871.188 kb on - strand, within DZA65_RS04155 at 871.188 kb on - strand, within DZA65_RS04155 at 871.188 kb on - strand, within DZA65_RS04155 at 871.188 kb on - strand, within DZA65_RS04155 at 871.230 kb on + strand, within DZA65_RS04155 at 871.230 kb on + strand, within DZA65_RS04155 at 871.230 kb on + strand, within DZA65_RS04155 at 871.230 kb on + strand, within DZA65_RS04155 at 871.231 kb on - strand, within DZA65_RS04155 at 871.231 kb on - strand, within DZA65_RS04155 at 871.231 kb on - strand, within DZA65_RS04155 at 871.242 kb on + strand, within DZA65_RS04155 at 871.242 kb on + strand, within DZA65_RS04155 at 871.242 kb on + strand, within DZA65_RS04155 at 871.242 kb on + strand, within DZA65_RS04155 at 871.242 kb on + strand, within DZA65_RS04155 at 871.243 kb on - strand, within DZA65_RS04155 at 871.243 kb on - strand, within DZA65_RS04155 at 871.243 kb on - strand, within DZA65_RS04155 at 871.243 kb on - strand, within DZA65_RS04155 at 871.265 kb on + strand, within DZA65_RS04155 at 871.266 kb on - strand, within DZA65_RS04155 at 871.341 kb on + strand, within DZA65_RS04155
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 869,322 + -2.3 869,322 + -2.9 869,322 + +0.0 869,323 - +1.0 869,323 - +3.0 869,323 - +0.3 869,323 - -1.1 869,323 - +0.0 869,340 + +2.1 869,340 + -0.4 869,340 + +0.2 869,340 + -1.6 869,340 + -2.2 869,340 + -1.9 869,341 - -1.3 869,341 - -1.3 869,341 - -1.9 869,341 - -1.2 869,341 - -0.5 869,341 - -1.3 869,341 - +0.3 869,341 - -0.5 869,341 - +1.0 869,345 - -0.5 869,415 - DZA65_RS04130 0.29 -0.7 869,415 - DZA65_RS04130 0.29 +0.8 869,479 + DZA65_RS04130 0.48 -0.6 869,480 - DZA65_RS04130 0.48 +1.7 869,480 - DZA65_RS04130 0.48 +0.1 869,525 + DZA65_RS04130 0.61 +1.3 869,546 + DZA65_RS04130 0.68 +0.0 869,546 + DZA65_RS04130 0.68 -0.2 869,547 - DZA65_RS04130 0.68 -1.1 869,547 - DZA65_RS04130 0.68 -1.0 869,547 - DZA65_RS04130 0.68 -2.0 869,547 - DZA65_RS04130 0.68 -1.0 869,547 - DZA65_RS04130 0.68 -0.7 869,547 - DZA65_RS04130 0.68 -1.6 869,547 - DZA65_RS04130 0.68 -1.8 869,564 + DZA65_RS04130 0.73 -0.2 869,602 + DZA65_RS04130 0.84 +0.0 869,602 + DZA65_RS04130 0.84 -0.2 869,630 - +0.9 869,630 - -0.5 869,649 + +0.4 869,650 - -0.9 869,667 - +0.2 869,667 - +0.7 869,798 + DZA65_RS04135 0.40 +0.3 869,799 - DZA65_RS04135 0.40 -0.6 869,853 - DZA65_RS04135 0.55 +2.3 869,868 + DZA65_RS04135 0.59 -1.3 869,869 - DZA65_RS04135 0.60 +0.2 869,869 - DZA65_RS04135 0.60 +1.9 869,869 - DZA65_RS04135 0.60 -1.3 869,904 + DZA65_RS04135 0.69 +3.6 869,905 - DZA65_RS04135 0.70 +0.0 869,941 + DZA65_RS04135 0.80 +0.9 869,941 + DZA65_RS04135 0.80 -1.7 869,942 - DZA65_RS04135 0.80 -0.8 869,942 - DZA65_RS04135 0.80 +1.6 869,975 + DZA65_RS04135 0.89 +0.5 869,975 + DZA65_RS04135 0.89 -1.5 870,024 + +1.5 870,112 - +1.0 870,156 + -1.0 870,161 + -1.0 870,198 + DZA65_RS04145 0.21 +0.5 870,209 - DZA65_RS04145 0.25 +0.1 870,223 - DZA65_RS04145 0.30 +0.0 870,243 + DZA65_RS04145 0.38 -1.5 870,244 - DZA65_RS04145 0.38 -1.2 870,244 - DZA65_RS04145 0.38 +0.7 870,265 + DZA65_RS04145 0.47 +0.5 870,265 + DZA65_RS04145 0.47 -1.0 870,265 + DZA65_RS04145 0.47 +0.4 870,345 + DZA65_RS04145 0.78 -0.4 870,368 - DZA65_RS04145 0.86 +0.0 870,465 + -1.7 870,470 - +0.5 870,524 + +1.3 870,524 + -1.0 870,525 - -0.6 870,525 - -0.4 870,539 + +0.4 870,545 + +0.9 870,545 + +0.0 870,546 - +2.2 870,578 - +1.3 870,578 - -0.8 870,612 + -1.0 870,612 + -1.3 870,613 - -2.3 870,613 - +1.0 870,613 - +1.5 870,613 - +0.2 870,613 - +0.1 870,613 - -0.1 870,625 + -1.0 870,626 - +1.2 870,626 - +1.0 870,727 + -1.6 870,727 + -1.3 870,727 + -0.6 870,728 - +0.0 870,739 + +0.3 870,739 + -0.9 870,739 + +0.4 870,739 + -0.2 870,739 + -1.0 870,739 + +0.1 870,739 + -0.5 870,740 - +0.3 870,740 - +0.5 870,740 - -0.7 870,740 - -2.0 870,740 - +1.0 870,740 - -1.6 870,745 + +1.0 870,746 - -2.0 870,839 - DZA65_RS04155 0.13 -1.8 870,839 - DZA65_RS04155 0.13 -1.8 870,890 + DZA65_RS04155 0.15 +1.0 870,890 + DZA65_RS04155 0.15 +1.6 870,890 + DZA65_RS04155 0.15 +0.3 870,890 + DZA65_RS04155 0.15 -0.6 870,890 + DZA65_RS04155 0.15 -0.6 870,890 + DZA65_RS04155 0.15 -1.9 870,890 + DZA65_RS04155 0.15 -0.8 870,890 + DZA65_RS04155 0.15 -0.5 870,890 + DZA65_RS04155 0.15 -0.8 870,891 - DZA65_RS04155 0.15 -1.0 870,891 - DZA65_RS04155 0.15 -2.0 870,891 - DZA65_RS04155 0.15 -0.3 870,891 - DZA65_RS04155 0.15 -1.8 870,891 - DZA65_RS04155 0.15 -1.3 870,891 - DZA65_RS04155 0.15 -1.7 870,891 - DZA65_RS04155 0.15 -1.3 870,891 - DZA65_RS04155 0.15 -0.6 870,891 - DZA65_RS04155 0.15 -0.6 871,070 - DZA65_RS04155 0.24 +0.3 871,109 + DZA65_RS04155 0.26 -1.3 871,109 + DZA65_RS04155 0.26 +0.0 871,109 + DZA65_RS04155 0.26 -0.6 871,109 + DZA65_RS04155 0.26 -0.6 871,109 + DZA65_RS04155 0.26 +0.0 871,109 + DZA65_RS04155 0.26 -0.6 871,110 - DZA65_RS04155 0.26 -1.3 871,110 - DZA65_RS04155 0.26 +1.4 871,110 - DZA65_RS04155 0.26 +1.0 871,111 + DZA65_RS04155 0.27 +0.0 871,111 + DZA65_RS04155 0.27 +1.3 871,111 + DZA65_RS04155 0.27 +1.7 871,111 + DZA65_RS04155 0.27 -1.5 871,111 + -1.3 871,111 + DZA65_RS04155 0.27 -1.3 871,112 - DZA65_RS04155 0.27 +2.0 871,112 - DZA65_RS04155 0.27 -0.3 871,112 - DZA65_RS04155 0.27 -0.4 871,112 - DZA65_RS04155 0.27 -0.4 871,112 - DZA65_RS04155 0.27 -1.3 871,112 - DZA65_RS04155 0.27 -1.9 871,117 + DZA65_RS04155 0.27 -1.0 871,118 - DZA65_RS04155 0.27 -1.3 871,147 + DZA65_RS04155 0.28 +0.4 871,187 + DZA65_RS04155 0.30 -1.7 871,187 + DZA65_RS04155 0.30 +0.7 871,187 + DZA65_RS04155 0.30 +0.3 871,187 + DZA65_RS04155 0.30 -1.6 871,187 + DZA65_RS04155 0.30 -1.3 871,188 - DZA65_RS04155 0.30 -0.0 871,188 - DZA65_RS04155 0.30 +2.1 871,188 - DZA65_RS04155 0.30 +0.0 871,188 - DZA65_RS04155 0.30 -2.2 871,188 - DZA65_RS04155 0.30 -1.3 871,188 - DZA65_RS04155 0.30 +1.1 871,230 + DZA65_RS04155 0.33 +3.3 871,230 + DZA65_RS04155 0.33 -2.0 871,230 + DZA65_RS04155 0.33 -0.6 871,230 + DZA65_RS04155 0.33 -0.6 871,231 - DZA65_RS04155 0.33 +0.0 871,231 - DZA65_RS04155 0.33 -1.8 871,231 - DZA65_RS04155 0.33 +0.7 871,242 + DZA65_RS04155 0.33 +1.7 871,242 + DZA65_RS04155 0.33 -1.4 871,242 + DZA65_RS04155 0.33 -3.9 871,242 + DZA65_RS04155 0.33 -1.3 871,242 + DZA65_RS04155 0.33 -1.0 871,243 - DZA65_RS04155 0.33 +0.2 871,243 - DZA65_RS04155 0.33 -0.6 871,243 - DZA65_RS04155 0.33 +0.4 871,243 - DZA65_RS04155 0.33 +0.4 871,265 + DZA65_RS04155 0.34 -1.6 871,266 - DZA65_RS04155 0.34 -0.7 871,341 + DZA65_RS04155 0.38 -0.4
Or see this region's nucleotide sequence