Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03760 and DZA65_RS03765 are separated by 101 nucleotides DZA65_RS03765 and DZA65_RS03770 overlap by 14 nucleotides
DZA65_RS03760: DZA65_RS03760 - fructuronate reductase, at 794,467 to 795,981
_RS03760
DZA65_RS03765: DZA65_RS03765 - DHA2 family efflux MFS transporter permease subunit, at 796,083 to 797,687
_RS03765
DZA65_RS03770: DZA65_RS03770 - HlyD family secretion protein, at 797,674 to 798,831
_RS03770
Position (kb) 796
797
798 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 795.282 kb on + strand, within DZA65_RS03760 at 795.282 kb on + strand, within DZA65_RS03760 at 795.282 kb on + strand, within DZA65_RS03760 at 795.282 kb on + strand, within DZA65_RS03760 at 795.283 kb on - strand, within DZA65_RS03760 at 795.493 kb on + strand, within DZA65_RS03760 at 795.493 kb on + strand, within DZA65_RS03760 at 795.494 kb on - strand, within DZA65_RS03760 at 795.525 kb on + strand, within DZA65_RS03760 at 795.558 kb on + strand, within DZA65_RS03760 at 795.754 kb on + strand, within DZA65_RS03760 at 795.754 kb on + strand, within DZA65_RS03760 at 795.754 kb on + strand, within DZA65_RS03760 at 795.755 kb on - strand, within DZA65_RS03760 at 795.755 kb on - strand, within DZA65_RS03760 at 795.755 kb on - strand, within DZA65_RS03760 at 795.755 kb on - strand, within DZA65_RS03760 at 795.853 kb on + strand at 795.853 kb on + strand at 795.853 kb on + strand at 795.853 kb on + strand at 795.853 kb on + strand at 795.853 kb on + strand at 795.853 kb on + strand at 795.853 kb on + strand at 795.854 kb on - strand at 795.854 kb on - strand at 795.854 kb on - strand at 795.854 kb on - strand at 795.854 kb on - strand at 795.854 kb on - strand at 795.854 kb on - strand at 795.854 kb on - strand at 795.981 kb on + strand at 795.981 kb on + strand at 795.982 kb on - strand at 796.023 kb on - strand at 796.053 kb on + strand at 796.249 kb on + strand, within DZA65_RS03765 at 796.249 kb on + strand, within DZA65_RS03765 at 796.250 kb on - strand, within DZA65_RS03765 at 796.250 kb on - strand, within DZA65_RS03765 at 796.250 kb on - strand, within DZA65_RS03765 at 796.250 kb on - strand, within DZA65_RS03765 at 796.250 kb on - strand, within DZA65_RS03765 at 796.250 kb on - strand at 796.250 kb on - strand, within DZA65_RS03765 at 796.713 kb on + strand, within DZA65_RS03765 at 796.713 kb on + strand, within DZA65_RS03765 at 796.713 kb on + strand, within DZA65_RS03765 at 796.714 kb on - strand, within DZA65_RS03765 at 796.714 kb on - strand, within DZA65_RS03765 at 796.714 kb on - strand, within DZA65_RS03765 at 796.714 kb on - strand, within DZA65_RS03765 at 796.714 kb on - strand, within DZA65_RS03765 at 796.788 kb on + strand, within DZA65_RS03765 at 796.788 kb on + strand, within DZA65_RS03765 at 796.789 kb on - strand, within DZA65_RS03765 at 796.805 kb on + strand, within DZA65_RS03765 at 796.805 kb on + strand, within DZA65_RS03765 at 796.805 kb on + strand, within DZA65_RS03765 at 796.805 kb on + strand, within DZA65_RS03765 at 796.806 kb on - strand, within DZA65_RS03765 at 796.806 kb on - strand, within DZA65_RS03765 at 796.806 kb on - strand, within DZA65_RS03765 at 796.806 kb on - strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.819 kb on + strand, within DZA65_RS03765 at 796.819 kb on + strand, within DZA65_RS03765 at 796.820 kb on - strand, within DZA65_RS03765 at 796.820 kb on - strand, within DZA65_RS03765 at 796.820 kb on - strand, within DZA65_RS03765 at 796.851 kb on - strand, within DZA65_RS03765 at 796.851 kb on - strand, within DZA65_RS03765 at 796.851 kb on - strand, within DZA65_RS03765 at 796.851 kb on - strand, within DZA65_RS03765 at 796.904 kb on - strand, within DZA65_RS03765 at 797.052 kb on - strand, within DZA65_RS03765 at 797.052 kb on - strand, within DZA65_RS03765 at 797.052 kb on - strand, within DZA65_RS03765 at 797.096 kb on + strand, within DZA65_RS03765 at 797.096 kb on + strand, within DZA65_RS03765 at 797.096 kb on + strand, within DZA65_RS03765 at 797.097 kb on - strand, within DZA65_RS03765 at 797.097 kb on - strand, within DZA65_RS03765 at 797.097 kb on - strand, within DZA65_RS03765 at 797.097 kb on - strand, within DZA65_RS03765 at 797.232 kb on + strand, within DZA65_RS03765 at 797.232 kb on + strand, within DZA65_RS03765 at 797.233 kb on - strand, within DZA65_RS03765 at 797.233 kb on - strand, within DZA65_RS03765 at 797.233 kb on - strand, within DZA65_RS03765 at 797.236 kb on - strand, within DZA65_RS03765 at 797.236 kb on - strand, within DZA65_RS03765 at 797.236 kb on - strand, within DZA65_RS03765 at 797.248 kb on + strand, within DZA65_RS03765 at 797.248 kb on + strand, within DZA65_RS03765 at 797.249 kb on - strand at 797.249 kb on - strand, within DZA65_RS03765 at 797.249 kb on - strand, within DZA65_RS03765 at 797.249 kb on - strand, within DZA65_RS03765 at 797.431 kb on + strand, within DZA65_RS03765 at 797.431 kb on + strand, within DZA65_RS03765 at 797.431 kb on + strand, within DZA65_RS03765 at 797.431 kb on + strand, within DZA65_RS03765 at 797.432 kb on - strand, within DZA65_RS03765 at 797.432 kb on - strand, within DZA65_RS03765 at 797.571 kb on + strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.644 kb on + strand at 797.645 kb on - strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.764 kb on - strand at 797.764 kb on - strand at 797.928 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.042 kb on - strand, within DZA65_RS03770 at 798.042 kb on - strand, within DZA65_RS03770 at 798.042 kb on - strand at 798.363 kb on + strand, within DZA65_RS03770 at 798.364 kb on - strand, within DZA65_RS03770 at 798.492 kb on - strand, within DZA65_RS03770 at 798.492 kb on - strand, within DZA65_RS03770 at 798.565 kb on + strand, within DZA65_RS03770 at 798.566 kb on - strand, within DZA65_RS03770 at 798.566 kb on - strand, within DZA65_RS03770
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 795,282 + DZA65_RS03760 0.54 +0.5 795,282 + DZA65_RS03760 0.54 -1.0 795,282 + DZA65_RS03760 0.54 +0.7 795,282 + DZA65_RS03760 0.54 -1.7 795,283 - DZA65_RS03760 0.54 +0.6 795,493 + DZA65_RS03760 0.68 +0.1 795,493 + DZA65_RS03760 0.68 -0.4 795,494 - DZA65_RS03760 0.68 -2.9 795,525 + DZA65_RS03760 0.70 +1.3 795,558 + DZA65_RS03760 0.72 +1.4 795,754 + DZA65_RS03760 0.85 -1.6 795,754 + DZA65_RS03760 0.85 -1.1 795,754 + DZA65_RS03760 0.85 +0.1 795,755 - DZA65_RS03760 0.85 +1.1 795,755 - DZA65_RS03760 0.85 -1.5 795,755 - DZA65_RS03760 0.85 +1.7 795,755 - DZA65_RS03760 0.85 -1.7 795,853 + +1.3 795,853 + -0.5 795,853 + +1.4 795,853 + -0.1 795,853 + +0.1 795,853 + +0.1 795,853 + +1.1 795,853 + +0.1 795,854 - -0.4 795,854 - +1.1 795,854 - -1.5 795,854 - -1.3 795,854 - -0.3 795,854 - +0.1 795,854 - -1.5 795,854 - +1.1 795,981 + +0.5 795,981 + -1.7 795,982 - +1.1 796,023 - -0.9 796,053 + -0.7 796,249 + DZA65_RS03765 0.10 -0.5 796,249 + DZA65_RS03765 0.10 -0.9 796,250 - DZA65_RS03765 0.10 -0.4 796,250 - DZA65_RS03765 0.10 +0.4 796,250 - DZA65_RS03765 0.10 +0.5 796,250 - DZA65_RS03765 0.10 +3.6 796,250 - DZA65_RS03765 0.10 -0.7 796,250 - -2.3 796,250 - DZA65_RS03765 0.10 -0.5 796,713 + DZA65_RS03765 0.39 +0.5 796,713 + DZA65_RS03765 0.39 -1.5 796,713 + DZA65_RS03765 0.39 +0.4 796,714 - DZA65_RS03765 0.39 -0.7 796,714 - DZA65_RS03765 0.39 -1.9 796,714 - DZA65_RS03765 0.39 -0.9 796,714 - DZA65_RS03765 0.39 +0.8 796,714 - DZA65_RS03765 0.39 +1.3 796,788 + DZA65_RS03765 0.44 -0.2 796,788 + DZA65_RS03765 0.44 -0.6 796,789 - DZA65_RS03765 0.44 +0.6 796,805 + DZA65_RS03765 0.45 +0.5 796,805 + DZA65_RS03765 0.45 -1.3 796,805 + DZA65_RS03765 0.45 -1.4 796,805 + DZA65_RS03765 0.45 +0.3 796,806 - DZA65_RS03765 0.45 -2.1 796,806 - DZA65_RS03765 0.45 +1.1 796,806 - DZA65_RS03765 0.45 -2.3 796,806 - DZA65_RS03765 0.45 -1.3 796,807 + DZA65_RS03765 0.45 +0.4 796,807 + DZA65_RS03765 0.45 -1.7 796,807 + DZA65_RS03765 0.45 -1.1 796,807 + DZA65_RS03765 0.45 -1.7 796,807 + DZA65_RS03765 0.45 +1.1 796,807 + DZA65_RS03765 0.45 -0.9 796,807 + DZA65_RS03765 0.45 -1.5 796,807 + DZA65_RS03765 0.45 +0.1 796,807 + DZA65_RS03765 0.45 +0.3 796,807 + DZA65_RS03765 0.45 +1.0 796,807 + DZA65_RS03765 0.45 -2.7 796,807 + DZA65_RS03765 0.45 +1.1 796,807 + DZA65_RS03765 0.45 -1.8 796,807 + DZA65_RS03765 0.45 -2.5 796,807 + DZA65_RS03765 0.45 -1.3 796,808 - DZA65_RS03765 0.45 +0.7 796,808 - DZA65_RS03765 0.45 +0.2 796,808 - DZA65_RS03765 0.45 -1.1 796,808 - DZA65_RS03765 0.45 -1.7 796,808 - DZA65_RS03765 0.45 +1.1 796,808 - -1.7 796,808 - DZA65_RS03765 0.45 +2.4 796,808 - DZA65_RS03765 0.45 +0.3 796,808 - DZA65_RS03765 0.45 +0.3 796,808 - DZA65_RS03765 0.45 +0.3 796,808 - DZA65_RS03765 0.45 -0.6 796,808 - DZA65_RS03765 0.45 -0.9 796,808 - DZA65_RS03765 0.45 +1.4 796,808 - DZA65_RS03765 0.45 -0.5 796,819 + DZA65_RS03765 0.46 +1.3 796,819 + DZA65_RS03765 0.46 -1.7 796,820 - DZA65_RS03765 0.46 -0.9 796,820 - DZA65_RS03765 0.46 -0.5 796,820 - DZA65_RS03765 0.46 -0.5 796,851 - DZA65_RS03765 0.48 +2.1 796,851 - DZA65_RS03765 0.48 -0.8 796,851 - DZA65_RS03765 0.48 -0.7 796,851 - DZA65_RS03765 0.48 -2.5 796,904 - DZA65_RS03765 0.51 -0.9 797,052 - DZA65_RS03765 0.60 -0.3 797,052 - DZA65_RS03765 0.60 -0.5 797,052 - DZA65_RS03765 0.60 +2.1 797,096 + DZA65_RS03765 0.63 +0.1 797,096 + DZA65_RS03765 0.63 +0.6 797,096 + DZA65_RS03765 0.63 +1.6 797,097 - DZA65_RS03765 0.63 -0.3 797,097 - DZA65_RS03765 0.63 -0.8 797,097 - DZA65_RS03765 0.63 +1.0 797,097 - DZA65_RS03765 0.63 -0.6 797,232 + DZA65_RS03765 0.72 +0.5 797,232 + DZA65_RS03765 0.72 -3.1 797,233 - DZA65_RS03765 0.72 +0.1 797,233 - DZA65_RS03765 0.72 +0.5 797,233 - DZA65_RS03765 0.72 -0.1 797,236 - DZA65_RS03765 0.72 -0.5 797,236 - DZA65_RS03765 0.72 -0.5 797,236 - DZA65_RS03765 0.72 -0.2 797,248 + DZA65_RS03765 0.73 -2.4 797,248 + DZA65_RS03765 0.73 -0.6 797,249 - -1.3 797,249 - DZA65_RS03765 0.73 +0.7 797,249 - DZA65_RS03765 0.73 +2.4 797,249 - DZA65_RS03765 0.73 +1.1 797,431 + DZA65_RS03765 0.84 -1.3 797,431 + DZA65_RS03765 0.84 -1.5 797,431 + DZA65_RS03765 0.84 +2.6 797,431 + DZA65_RS03765 0.84 -0.1 797,432 - DZA65_RS03765 0.84 -1.7 797,432 - DZA65_RS03765 0.84 -1.9 797,571 + -0.5 797,572 - -0.5 797,572 - +0.1 797,572 - +0.3 797,572 - -1.3 797,572 - -2.3 797,572 - -1.1 797,572 - -0.5 797,572 - -0.3 797,644 + -0.9 797,645 - +1.5 797,648 + +1.9 797,648 + -0.3 797,648 + +1.9 797,648 + +0.1 797,648 + -0.9 797,648 + +0.4 797,648 + -0.9 797,648 + +0.3 797,648 + -0.7 797,648 + -0.2 797,648 + +1.5 797,649 - -2.3 797,649 - -0.9 797,649 - -1.7 797,649 - +0.2 797,649 - -1.1 797,649 - +0.4 797,649 - +0.4 797,649 - -1.5 797,649 - +1.1 797,764 - -0.2 797,764 - +0.5 797,928 + DZA65_RS03770 0.22 +1.3 798,041 + DZA65_RS03770 0.32 -0.9 798,041 + DZA65_RS03770 0.32 -1.6 798,041 + DZA65_RS03770 0.32 -0.6 798,041 + DZA65_RS03770 0.32 +0.1 798,042 - DZA65_RS03770 0.32 +0.5 798,042 - DZA65_RS03770 0.32 -0.2 798,042 - +0.6 798,363 + DZA65_RS03770 0.59 +0.3 798,364 - DZA65_RS03770 0.60 +0.5 798,492 - DZA65_RS03770 0.71 -0.8 798,492 - DZA65_RS03770 0.71 +1.1 798,565 + DZA65_RS03770 0.77 -0.3 798,566 - DZA65_RS03770 0.77 +2.1 798,566 - DZA65_RS03770 0.77 +0.1
Or see this region's nucleotide sequence