Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01610

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01595 and DZA65_RS01605 are separated by 254 nucleotidesDZA65_RS01605 and DZA65_RS01610 are separated by 15 nucleotidesDZA65_RS01610 and DZA65_RS01615 are separated by 316 nucleotidesDZA65_RS01615 and DZA65_RS01620 are separated by 4 nucleotides DZA65_RS01595: DZA65_RS01595 - cell division protein ZapE, at 345,996 to 347,126 _RS01595 DZA65_RS01605: DZA65_RS01605 - 50S ribosomal protein L13, at 347,381 to 347,809 _RS01605 DZA65_RS01610: DZA65_RS01610 - 30S ribosomal protein S9, at 347,825 to 348,217 _RS01610 DZA65_RS01615: DZA65_RS01615 - stringent starvation protein A, at 348,534 to 349,175 _RS01615 DZA65_RS01620: DZA65_RS01620 - ClpXP protease specificity-enhancing factor, at 349,180 to 349,677 _RS01620 Position (kb) 347 348 349Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 346.863 kb on + strand, within DZA65_RS01595at 346.863 kb on + strand, within DZA65_RS01595at 346.863 kb on + strand, within DZA65_RS01595at 346.863 kb on + strand, within DZA65_RS01595at 346.863 kb on + strand, within DZA65_RS01595at 346.864 kb on - strand, within DZA65_RS01595at 346.864 kb on - strand, within DZA65_RS01595at 346.864 kb on - strand, within DZA65_RS01595at 346.864 kb on - strand, within DZA65_RS01595at 346.864 kb on - strand, within DZA65_RS01595at 346.864 kb on - strand, within DZA65_RS01595at 346.864 kb on - strand, within DZA65_RS01595at 346.864 kb on - strand, within DZA65_RS01595at 346.884 kb on + strand, within DZA65_RS01595at 346.884 kb on + strand, within DZA65_RS01595at 346.885 kb on - strand, within DZA65_RS01595at 346.885 kb on - strand, within DZA65_RS01595at 346.885 kb on - strand, within DZA65_RS01595at 346.974 kb on + strand, within DZA65_RS01595at 346.974 kb on + strand, within DZA65_RS01595at 346.974 kb on + strand, within DZA65_RS01595at 346.975 kb on - strand, within DZA65_RS01595at 346.997 kb on + strand, within DZA65_RS01595at 346.997 kb on + strand, within DZA65_RS01595at 346.997 kb on + strand, within DZA65_RS01595at 346.997 kb on + strand, within DZA65_RS01595at 346.997 kb on + strand, within DZA65_RS01595at 346.998 kb on - strand, within DZA65_RS01595at 346.998 kb on - strand, within DZA65_RS01595at 346.998 kb on - strand, within DZA65_RS01595at 346.998 kb on - strand, within DZA65_RS01595at 347.029 kb on - strandat 347.055 kb on + strandat 347.100 kb on + strandat 347.101 kb on - strandat 347.101 kb on - strandat 347.155 kb on - strandat 348.328 kb on - strandat 348.374 kb on + strandat 348.380 kb on - strandat 348.380 kb on - strandat 348.380 kb on - strandat 348.417 kb on + strandat 348.417 kb on + strandat 348.486 kb on + strandat 348.486 kb on + strandat 348.486 kb on + strandat 348.487 kb on - strandat 348.596 kb on + strandat 348.597 kb on - strandat 348.665 kb on + strand, within DZA65_RS01615at 348.666 kb on - strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.753 kb on - strand, within DZA65_RS01615at 348.753 kb on - strand, within DZA65_RS01615at 348.753 kb on - strand, within DZA65_RS01615at 348.753 kb on - strand, within DZA65_RS01615at 348.753 kb on - strand, within DZA65_RS01615at 348.765 kb on + strand, within DZA65_RS01615at 348.765 kb on + strand, within DZA65_RS01615at 348.765 kb on + strand, within DZA65_RS01615at 348.766 kb on - strand, within DZA65_RS01615at 348.766 kb on - strand, within DZA65_RS01615at 348.807 kb on + strand, within DZA65_RS01615at 348.864 kb on + strand, within DZA65_RS01615at 348.864 kb on + strand, within DZA65_RS01615at 348.975 kb on + strand, within DZA65_RS01615at 348.975 kb on + strand, within DZA65_RS01615at 348.975 kb on + strand, within DZA65_RS01615at 348.976 kb on - strand, within DZA65_RS01615at 349.011 kb on + strand, within DZA65_RS01615at 349.012 kb on - strand, within DZA65_RS01615at 349.012 kb on - strand, within DZA65_RS01615at 349.012 kb on - strand, within DZA65_RS01615at 349.089 kb on + strand, within DZA65_RS01615at 349.089 kb on + strand, within DZA65_RS01615at 349.089 kb on + strand, within DZA65_RS01615at 349.089 kb on + strand, within DZA65_RS01615at 349.090 kb on - strand, within DZA65_RS01615at 349.090 kb on - strand, within DZA65_RS01615at 349.213 kb on + strandat 349.214 kb on - strandat 349.217 kb on + strandat 349.217 kb on + strandat 349.217 kb on + strandat 349.217 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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346,863 + DZA65_RS01595 0.77 +0.2
346,863 + DZA65_RS01595 0.77 -0.8
346,863 + DZA65_RS01595 0.77 -1.3
346,863 + DZA65_RS01595 0.77 +0.1
346,863 + DZA65_RS01595 0.77 -1.6
346,864 - DZA65_RS01595 0.77 -0.3
346,864 - DZA65_RS01595 0.77 -0.3
346,864 - DZA65_RS01595 0.77 -0.8
346,864 - DZA65_RS01595 0.77 +0.8
346,864 - DZA65_RS01595 0.77 -0.4
346,864 - DZA65_RS01595 0.77 +0.2
346,864 - DZA65_RS01595 0.77 +0.2
346,864 - DZA65_RS01595 0.77 -1.3
346,884 + DZA65_RS01595 0.79 -1.3
346,884 + DZA65_RS01595 0.79 -0.7
346,885 - DZA65_RS01595 0.79 -0.3
346,885 - DZA65_RS01595 0.79 -0.2
346,885 - DZA65_RS01595 0.79 -0.6
346,974 + DZA65_RS01595 0.86 +0.4
346,974 + DZA65_RS01595 0.86 -1.1
346,974 + DZA65_RS01595 0.86 +0.0
346,975 - DZA65_RS01595 0.87 -0.3
346,997 + DZA65_RS01595 0.89 -0.8
346,997 + DZA65_RS01595 0.89 +0.8
346,997 + DZA65_RS01595 0.89 -1.0
346,997 + DZA65_RS01595 0.89 -0.7
346,997 + DZA65_RS01595 0.89 -0.1
346,998 - DZA65_RS01595 0.89 -2.1
346,998 - DZA65_RS01595 0.89 +0.1
346,998 - DZA65_RS01595 0.89 -1.1
346,998 - DZA65_RS01595 0.89 -1.0
347,029 - +0.7
347,055 + -2.3
347,100 + -1.1
347,101 - -0.8
347,101 - -0.1
347,155 - +1.7
348,328 - +0.9
348,374 + -0.5
348,380 - -1.9
348,380 - -2.3
348,380 - -1.4
348,417 + -0.1
348,417 + -1.1
348,486 + -0.9
348,486 + -0.5
348,486 + -1.9
348,487 - -1.6
348,596 + -1.8
348,597 - -0.3
348,665 + DZA65_RS01615 0.20 -1.4
348,666 - DZA65_RS01615 0.21 -2.7
348,741 + DZA65_RS01615 0.32 -1.5
348,741 + DZA65_RS01615 0.32 -0.3
348,741 + DZA65_RS01615 0.32 +1.8
348,741 + DZA65_RS01615 0.32 -1.2
348,741 + DZA65_RS01615 0.32 -0.8
348,741 + DZA65_RS01615 0.32 -1.1
348,741 + DZA65_RS01615 0.32 -2.4
348,742 - DZA65_RS01615 0.32 -2.5
348,742 - DZA65_RS01615 0.32 -1.6
348,742 - DZA65_RS01615 0.32 -1.6
348,742 - DZA65_RS01615 0.32 -0.8
348,742 - DZA65_RS01615 0.32 -2.5
348,742 - DZA65_RS01615 0.32 -0.8
348,742 - DZA65_RS01615 0.32 -2.8
348,752 + DZA65_RS01615 0.34 -0.3
348,752 + DZA65_RS01615 0.34 -1.1
348,752 + DZA65_RS01615 0.34 -0.9
348,752 + DZA65_RS01615 0.34 -1.6
348,752 + DZA65_RS01615 0.34 -1.8
348,752 + DZA65_RS01615 0.34 +0.2
348,752 + DZA65_RS01615 0.34 -0.1
348,752 + DZA65_RS01615 0.34 -0.6
348,752 + DZA65_RS01615 0.34 -1.3
348,752 + DZA65_RS01615 0.34 -2.3
348,752 + DZA65_RS01615 0.34 -1.8
348,752 + DZA65_RS01615 0.34 -1.1
348,752 + DZA65_RS01615 0.34 -1.1
348,753 - DZA65_RS01615 0.34 -1.3
348,753 - DZA65_RS01615 0.34 -0.3
348,753 - DZA65_RS01615 0.34 -0.6
348,753 - DZA65_RS01615 0.34 -1.3
348,753 - DZA65_RS01615 0.34 -2.6
348,765 + DZA65_RS01615 0.36 -0.8
348,765 + DZA65_RS01615 0.36 -0.3
348,765 + DZA65_RS01615 0.36 -0.3
348,766 - DZA65_RS01615 0.36 -1.9
348,766 - DZA65_RS01615 0.36 -0.3
348,807 + DZA65_RS01615 0.43 -2.2
348,864 + DZA65_RS01615 0.51 -3.1
348,864 + DZA65_RS01615 0.51 -0.3
348,975 + DZA65_RS01615 0.69 -2.0
348,975 + DZA65_RS01615 0.69 -0.3
348,975 + DZA65_RS01615 0.69 -1.2
348,976 - DZA65_RS01615 0.69 -2.1
349,011 + DZA65_RS01615 0.74 -2.2
349,012 - DZA65_RS01615 0.74 -2.2
349,012 - DZA65_RS01615 0.74 +0.6
349,012 - DZA65_RS01615 0.74 -1.8
349,089 + DZA65_RS01615 0.86 +0.8
349,089 + DZA65_RS01615 0.86 -0.8
349,089 + DZA65_RS01615 0.86 +0.7
349,089 + DZA65_RS01615 0.86 -2.2
349,090 - DZA65_RS01615 0.87 -2.2
349,090 - DZA65_RS01615 0.87 +0.7
349,213 + +1.2
349,214 - +1.4
349,217 + -1.9
349,217 + -0.2
349,217 + -0.1
349,217 + -0.1

Or see this region's nucleotide sequence