Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01460 and DZA65_RS01465 are separated by 12 nucleotides DZA65_RS01465 and DZA65_RS01470 are separated by 114 nucleotides DZA65_RS01470 and DZA65_RS01475 are separated by 29 nucleotides
DZA65_RS01460: DZA65_RS01460 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 323,342 to 325,291
_RS01460
DZA65_RS01465: DZA65_RS01465 - DUF1543 domain-containing protein, at 325,304 to 325,804
_RS01465
DZA65_RS01470: DZA65_RS01470 - LysE family transporter, at 325,919 to 326,545
_RS01470
DZA65_RS01475: DZA65_RS01475 - ribosome-associated protein, at 326,575 to 327,123
_RS01475
Position (kb) 325
326 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 324.315 kb on + strand, within DZA65_RS01460 at 324.315 kb on + strand, within DZA65_RS01460 at 324.315 kb on + strand, within DZA65_RS01460 at 324.315 kb on + strand, within DZA65_RS01460 at 324.315 kb on + strand, within DZA65_RS01460 at 324.315 kb on + strand, within DZA65_RS01460 at 324.315 kb on + strand, within DZA65_RS01460 at 324.315 kb on + strand, within DZA65_RS01460 at 324.316 kb on - strand, within DZA65_RS01460 at 324.316 kb on - strand, within DZA65_RS01460 at 324.316 kb on - strand, within DZA65_RS01460 at 324.316 kb on - strand, within DZA65_RS01460 at 324.316 kb on - strand, within DZA65_RS01460 at 324.316 kb on - strand, within DZA65_RS01460 at 324.316 kb on - strand, within DZA65_RS01460 at 324.316 kb on - strand, within DZA65_RS01460 at 324.358 kb on - strand, within DZA65_RS01460 at 324.598 kb on + strand, within DZA65_RS01460 at 324.598 kb on + strand, within DZA65_RS01460 at 324.598 kb on + strand, within DZA65_RS01460 at 324.598 kb on + strand, within DZA65_RS01460 at 324.598 kb on + strand, within DZA65_RS01460 at 324.598 kb on + strand, within DZA65_RS01460 at 324.599 kb on - strand, within DZA65_RS01460 at 324.599 kb on - strand, within DZA65_RS01460 at 324.599 kb on - strand, within DZA65_RS01460 at 324.599 kb on - strand, within DZA65_RS01460 at 324.599 kb on - strand, within DZA65_RS01460 at 324.599 kb on - strand, within DZA65_RS01460 at 324.599 kb on - strand, within DZA65_RS01460 at 324.672 kb on + strand, within DZA65_RS01460 at 324.672 kb on + strand, within DZA65_RS01460 at 324.733 kb on + strand, within DZA65_RS01460 at 324.733 kb on + strand, within DZA65_RS01460 at 324.733 kb on + strand, within DZA65_RS01460 at 324.733 kb on + strand, within DZA65_RS01460 at 324.733 kb on + strand, within DZA65_RS01460 at 324.733 kb on + strand, within DZA65_RS01460 at 324.733 kb on + strand, within DZA65_RS01460 at 324.733 kb on + strand, within DZA65_RS01460 at 324.734 kb on - strand, within DZA65_RS01460 at 324.734 kb on - strand, within DZA65_RS01460 at 324.734 kb on - strand, within DZA65_RS01460 at 324.734 kb on - strand, within DZA65_RS01460 at 324.734 kb on - strand, within DZA65_RS01460 at 324.734 kb on - strand, within DZA65_RS01460 at 324.876 kb on + strand, within DZA65_RS01460 at 324.876 kb on + strand, within DZA65_RS01460 at 324.876 kb on + strand, within DZA65_RS01460 at 324.877 kb on - strand, within DZA65_RS01460 at 324.880 kb on + strand, within DZA65_RS01460 at 324.881 kb on - strand, within DZA65_RS01460 at 324.959 kb on + strand, within DZA65_RS01460 at 324.959 kb on + strand, within DZA65_RS01460 at 324.959 kb on + strand, within DZA65_RS01460 at 324.959 kb on + strand, within DZA65_RS01460 at 324.960 kb on - strand, within DZA65_RS01460 at 325.066 kb on - strand, within DZA65_RS01460 at 325.187 kb on + strand at 325.270 kb on + strand at 325.270 kb on + strand at 325.270 kb on + strand at 325.270 kb on + strand at 325.270 kb on + strand at 325.270 kb on + strand at 325.271 kb on - strand at 325.271 kb on - strand at 325.271 kb on - strand at 325.289 kb on + strand at 325.306 kb on - strand at 325.445 kb on + strand, within DZA65_RS01465 at 325.445 kb on + strand, within DZA65_RS01465 at 325.445 kb on + strand, within DZA65_RS01465 at 325.446 kb on - strand, within DZA65_RS01465 at 325.446 kb on - strand at 325.446 kb on - strand, within DZA65_RS01465 at 325.446 kb on - strand, within DZA65_RS01465 at 325.446 kb on - strand, within DZA65_RS01465 at 325.480 kb on + strand, within DZA65_RS01465 at 325.480 kb on + strand, within DZA65_RS01465 at 325.481 kb on - strand, within DZA65_RS01465 at 325.481 kb on - strand, within DZA65_RS01465 at 325.509 kb on - strand, within DZA65_RS01465 at 325.612 kb on + strand, within DZA65_RS01465 at 325.612 kb on + strand, within DZA65_RS01465 at 325.612 kb on + strand, within DZA65_RS01465 at 325.613 kb on - strand, within DZA65_RS01465 at 325.613 kb on - strand, within DZA65_RS01465 at 325.618 kb on - strand, within DZA65_RS01465 at 325.618 kb on - strand, within DZA65_RS01465 at 325.618 kb on - strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.782 kb on + strand at 325.782 kb on + strand at 325.782 kb on + strand at 325.782 kb on + strand at 325.782 kb on + strand at 325.782 kb on + strand at 325.783 kb on - strand at 325.783 kb on - strand at 325.783 kb on - strand at 325.783 kb on - strand at 325.783 kb on - strand at 325.783 kb on - strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.786 kb on - strand at 325.786 kb on - strand at 325.786 kb on - strand at 325.786 kb on - strand at 325.786 kb on - strand at 325.786 kb on - strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.793 kb on + strand at 325.793 kb on + strand at 325.794 kb on - strand at 325.887 kb on + strand at 325.887 kb on + strand at 325.887 kb on + strand at 325.888 kb on - strand at 325.901 kb on - strand at 325.918 kb on + strand at 325.918 kb on + strand at 325.918 kb on + strand at 325.918 kb on + strand at 325.918 kb on + strand at 325.918 kb on + strand at 325.918 kb on + strand at 325.918 kb on + strand at 325.919 kb on - strand at 325.919 kb on - strand at 325.919 kb on - strand at 325.919 kb on - strand at 325.919 kb on - strand at 325.999 kb on + strand, within DZA65_RS01470 at 325.999 kb on + strand, within DZA65_RS01470 at 326.000 kb on - strand, within DZA65_RS01470 at 326.000 kb on - strand, within DZA65_RS01470 at 326.000 kb on - strand, within DZA65_RS01470 at 326.143 kb on - strand, within DZA65_RS01470 at 326.261 kb on + strand, within DZA65_RS01470 at 326.261 kb on + strand, within DZA65_RS01470 at 326.261 kb on + strand, within DZA65_RS01470 at 326.262 kb on - strand, within DZA65_RS01470 at 326.262 kb on - strand, within DZA65_RS01470 at 326.262 kb on - strand, within DZA65_RS01470 at 326.275 kb on + strand, within DZA65_RS01470 at 326.275 kb on + strand, within DZA65_RS01470 at 326.275 kb on + strand, within DZA65_RS01470 at 326.276 kb on - strand, within DZA65_RS01470 at 326.420 kb on + strand, within DZA65_RS01470 at 326.420 kb on + strand, within DZA65_RS01470 at 326.421 kb on - strand, within DZA65_RS01470 at 326.421 kb on - strand, within DZA65_RS01470 at 326.421 kb on - strand, within DZA65_RS01470 at 326.421 kb on - strand, within DZA65_RS01470 at 326.506 kb on + strand at 326.506 kb on + strand at 326.507 kb on - strand at 326.543 kb on + strand at 326.543 kb on + strand at 326.543 kb on + strand at 326.543 kb on + strand at 326.543 kb on + strand at 326.543 kb on + strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.557 kb on + strand at 326.573 kb on + strand at 326.573 kb on + strand at 326.576 kb on + strand at 326.599 kb on + strand at 326.604 kb on - strand at 326.705 kb on + strand, within DZA65_RS01475
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 324,315 + DZA65_RS01460 0.50 +2.0 324,315 + DZA65_RS01460 0.50 -0.0 324,315 + DZA65_RS01460 0.50 -0.5 324,315 + DZA65_RS01460 0.50 +0.9 324,315 + DZA65_RS01460 0.50 +0.7 324,315 + DZA65_RS01460 0.50 -1.6 324,315 + DZA65_RS01460 0.50 +0.3 324,315 + DZA65_RS01460 0.50 +0.8 324,316 - DZA65_RS01460 0.50 +1.2 324,316 - DZA65_RS01460 0.50 +0.2 324,316 - DZA65_RS01460 0.50 -0.3 324,316 - DZA65_RS01460 0.50 -0.1 324,316 - DZA65_RS01460 0.50 -0.3 324,316 - DZA65_RS01460 0.50 -1.4 324,316 - DZA65_RS01460 0.50 +0.2 324,316 - DZA65_RS01460 0.50 +0.8 324,358 - DZA65_RS01460 0.52 +0.4 324,598 + DZA65_RS01460 0.64 -2.5 324,598 + DZA65_RS01460 0.64 -0.8 324,598 + DZA65_RS01460 0.64 +1.1 324,598 + DZA65_RS01460 0.64 -1.6 324,598 + DZA65_RS01460 0.64 -1.3 324,598 + DZA65_RS01460 0.64 +1.1 324,599 - DZA65_RS01460 0.64 -1.9 324,599 - DZA65_RS01460 0.64 +0.0 324,599 - DZA65_RS01460 0.64 +1.9 324,599 - DZA65_RS01460 0.64 +0.5 324,599 - DZA65_RS01460 0.64 -1.1 324,599 - DZA65_RS01460 0.64 +0.0 324,599 - DZA65_RS01460 0.64 +1.2 324,672 + DZA65_RS01460 0.68 -1.1 324,672 + DZA65_RS01460 0.68 +0.8 324,733 + DZA65_RS01460 0.71 -2.5 324,733 + DZA65_RS01460 0.71 -0.2 324,733 + DZA65_RS01460 0.71 +0.7 324,733 + DZA65_RS01460 0.71 +0.8 324,733 + DZA65_RS01460 0.71 -0.3 324,733 + DZA65_RS01460 0.71 +0.1 324,733 + DZA65_RS01460 0.71 +0.6 324,733 + DZA65_RS01460 0.71 -1.1 324,734 - DZA65_RS01460 0.71 -0.2 324,734 - DZA65_RS01460 0.71 +1.2 324,734 - DZA65_RS01460 0.71 -2.2 324,734 - DZA65_RS01460 0.71 -1.6 324,734 - DZA65_RS01460 0.71 +0.4 324,734 - DZA65_RS01460 0.71 +0.2 324,876 + DZA65_RS01460 0.79 +0.1 324,876 + DZA65_RS01460 0.79 -1.1 324,876 + DZA65_RS01460 0.79 +0.2 324,877 - DZA65_RS01460 0.79 -1.1 324,880 + DZA65_RS01460 0.79 +1.0 324,881 - DZA65_RS01460 0.79 -0.8 324,959 + DZA65_RS01460 0.83 -1.0 324,959 + DZA65_RS01460 0.83 -0.6 324,959 + DZA65_RS01460 0.83 -0.1 324,959 + DZA65_RS01460 0.83 -1.8 324,960 - DZA65_RS01460 0.83 -0.9 325,066 - DZA65_RS01460 0.88 +1.9 325,187 + +0.2 325,270 + +0.4 325,270 + +1.1 325,270 + +1.2 325,270 + +0.1 325,270 + +1.4 325,270 + -0.8 325,271 - +0.9 325,271 - +1.4 325,271 - -0.1 325,289 + +0.8 325,306 - -1.1 325,445 + DZA65_RS01465 0.28 -1.3 325,445 + DZA65_RS01465 0.28 +0.9 325,445 + DZA65_RS01465 0.28 -0.2 325,446 - DZA65_RS01465 0.28 -1.2 325,446 - -1.8 325,446 - DZA65_RS01465 0.28 -1.1 325,446 - DZA65_RS01465 0.28 +0.7 325,446 - DZA65_RS01465 0.28 +2.2 325,480 + DZA65_RS01465 0.35 +1.0 325,480 + DZA65_RS01465 0.35 -0.1 325,481 - DZA65_RS01465 0.35 -2.0 325,481 - DZA65_RS01465 0.35 +0.5 325,509 - DZA65_RS01465 0.41 -0.9 325,612 + DZA65_RS01465 0.61 +1.0 325,612 + DZA65_RS01465 0.61 +0.1 325,612 + DZA65_RS01465 0.61 -1.3 325,613 - DZA65_RS01465 0.62 -0.3 325,613 - DZA65_RS01465 0.62 +2.2 325,618 - DZA65_RS01465 0.63 +0.5 325,618 - DZA65_RS01465 0.63 +1.4 325,618 - DZA65_RS01465 0.63 -1.1 325,644 + DZA65_RS01465 0.68 -0.6 325,644 + DZA65_RS01465 0.68 +3.2 325,644 + DZA65_RS01465 0.68 +0.8 325,644 + DZA65_RS01465 0.68 +0.2 325,644 + DZA65_RS01465 0.68 +0.2 325,644 + DZA65_RS01465 0.68 -0.8 325,644 + DZA65_RS01465 0.68 -0.3 325,644 + DZA65_RS01465 0.68 -1.2 325,644 + DZA65_RS01465 0.68 -0.1 325,644 + DZA65_RS01465 0.68 -1.9 325,644 + +0.2 325,644 + DZA65_RS01465 0.68 -1.1 325,644 + DZA65_RS01465 0.68 +0.0 325,645 - DZA65_RS01465 0.68 -1.4 325,645 - DZA65_RS01465 0.68 -0.1 325,645 - DZA65_RS01465 0.68 +1.0 325,645 - DZA65_RS01465 0.68 +1.0 325,645 - DZA65_RS01465 0.68 +1.2 325,645 - DZA65_RS01465 0.68 -1.8 325,645 - DZA65_RS01465 0.68 -2.6 325,645 - DZA65_RS01465 0.68 -1.1 325,645 - DZA65_RS01465 0.68 -0.3 325,645 - DZA65_RS01465 0.68 -1.1 325,645 - DZA65_RS01465 0.68 +0.7 325,645 - DZA65_RS01465 0.68 +0.2 325,645 - DZA65_RS01465 0.68 -0.1 325,645 - DZA65_RS01465 0.68 +1.7 325,645 - DZA65_RS01465 0.68 -0.3 325,645 - DZA65_RS01465 0.68 +0.5 325,645 - DZA65_RS01465 0.68 -0.3 325,782 + +1.2 325,782 + -1.6 325,782 + -1.6 325,782 + -2.2 325,782 + -3.0 325,782 + -0.8 325,783 - +1.1 325,783 - -0.8 325,783 - -1.8 325,783 - -2.1 325,783 - +0.7 325,783 - +1.7 325,785 + -1.1 325,785 + -0.1 325,785 + -0.4 325,785 + -0.6 325,785 + +1.2 325,785 + -0.3 325,785 + -1.0 325,785 + -0.2 325,785 + -0.1 325,785 + -0.3 325,785 + -2.1 325,786 - -0.9 325,786 - -1.1 325,786 - -2.2 325,786 - +1.2 325,786 - -0.5 325,786 - -1.1 325,789 + +0.1 325,789 + +0.2 325,789 + +0.5 325,789 + +0.7 325,789 + -2.1 325,789 + +0.5 325,789 + -1.1 325,789 + +0.1 325,789 + +2.2 325,789 + +0.4 325,789 + -0.3 325,789 + -0.8 325,789 + +1.7 325,789 + +0.2 325,789 + -1.3 325,789 + +0.4 325,789 + -0.2 325,790 - -1.1 325,790 - -1.1 325,790 - -0.1 325,790 - -1.1 325,790 - -0.4 325,790 - +1.8 325,790 - -0.8 325,790 - +0.2 325,790 - +1.0 325,790 - +1.8 325,790 - -1.1 325,790 - +0.2 325,790 - -1.1 325,790 - +1.2 325,790 - +1.2 325,790 - -0.8 325,790 - -2.0 325,793 + -1.6 325,793 + +0.2 325,794 - +0.9 325,887 + -1.3 325,887 + +0.2 325,887 + +1.0 325,888 - -0.3 325,901 - +1.2 325,918 + +1.0 325,918 + +0.8 325,918 + -0.2 325,918 + +0.7 325,918 + -0.2 325,918 + +0.7 325,918 + -1.1 325,918 + -1.8 325,919 - -0.3 325,919 - +0.5 325,919 - +0.7 325,919 - -0.9 325,919 - +2.4 325,999 + DZA65_RS01470 0.13 -1.1 325,999 + DZA65_RS01470 0.13 -0.8 326,000 - DZA65_RS01470 0.13 -0.3 326,000 - DZA65_RS01470 0.13 -1.2 326,000 - DZA65_RS01470 0.13 -0.3 326,143 - DZA65_RS01470 0.36 -1.3 326,261 + DZA65_RS01470 0.55 -0.4 326,261 + DZA65_RS01470 0.55 -0.0 326,261 + DZA65_RS01470 0.55 -0.3 326,262 - DZA65_RS01470 0.55 +0.4 326,262 - DZA65_RS01470 0.55 +1.2 326,262 - DZA65_RS01470 0.55 -1.7 326,275 + DZA65_RS01470 0.57 -0.2 326,275 + DZA65_RS01470 0.57 -0.2 326,275 + DZA65_RS01470 0.57 -1.1 326,276 - DZA65_RS01470 0.57 +0.7 326,420 + DZA65_RS01470 0.80 +0.5 326,420 + DZA65_RS01470 0.80 +0.7 326,421 - DZA65_RS01470 0.80 -0.3 326,421 - DZA65_RS01470 0.80 -1.3 326,421 - DZA65_RS01470 0.80 -1.3 326,421 - DZA65_RS01470 0.80 +0.1 326,506 + -0.3 326,506 + -0.3 326,507 - -0.6 326,543 + +0.2 326,543 + -0.6 326,543 + +3.6 326,543 + +1.2 326,543 + -0.8 326,543 + -1.6 326,544 - -1.6 326,544 - -1.1 326,544 - +0.5 326,544 - -1.3 326,544 - -3.8 326,544 - +0.1 326,544 - -1.1 326,557 + +0.1 326,573 + -0.8 326,573 + -0.8 326,576 + +0.1 326,599 + +0.7 326,604 - +0.2 326,705 + DZA65_RS01475 0.24 -1.3
Or see this region's nucleotide sequence