Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS21535 and DZA65_RS21540 are separated by 109 nucleotides DZA65_RS21540 and DZA65_RS21545 are separated by 13 nucleotides DZA65_RS21545 and DZA65_RS21550 are separated by 148 nucleotides
DZA65_RS21535: DZA65_RS21535 - class II fructose-bisphosphatase, at 4,658,403 to 4,659,413
_RS21535
DZA65_RS21540: DZA65_RS21540 - ferredoxin--NADP(+) reductase, at 4,659,523 to 4,660,269
_RS21540
DZA65_RS21545: DZA65_RS21545 - DUF805 domain-containing protein, at 4,660,283 to 4,660,708
_RS21545
DZA65_RS21550: DZA65_RS21550 - YiiQ family protein, at 4,660,857 to 4,661,450
_RS21550
Position (kb) 4659
4660
4661 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4658.601 kb on + strand, within DZA65_RS21535 at 4658.601 kb on + strand, within DZA65_RS21535 at 4658.601 kb on + strand, within DZA65_RS21535 at 4658.601 kb on + strand, within DZA65_RS21535 at 4658.601 kb on + strand, within DZA65_RS21535 at 4658.601 kb on + strand at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.602 kb on - strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.757 kb on + strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.758 kb on - strand, within DZA65_RS21535 at 4658.938 kb on + strand, within DZA65_RS21535 at 4658.939 kb on - strand, within DZA65_RS21535 at 4658.939 kb on - strand, within DZA65_RS21535 at 4658.951 kb on + strand, within DZA65_RS21535 at 4658.979 kb on - strand, within DZA65_RS21535 at 4658.979 kb on - strand, within DZA65_RS21535 at 4659.018 kb on + strand, within DZA65_RS21535 at 4659.018 kb on + strand, within DZA65_RS21535 at 4659.018 kb on + strand, within DZA65_RS21535 at 4659.018 kb on + strand, within DZA65_RS21535 at 4659.019 kb on - strand, within DZA65_RS21535 at 4659.019 kb on - strand, within DZA65_RS21535 at 4659.019 kb on - strand, within DZA65_RS21535 at 4659.019 kb on - strand, within DZA65_RS21535 at 4659.047 kb on + strand, within DZA65_RS21535 at 4659.048 kb on - strand, within DZA65_RS21535 at 4659.048 kb on - strand, within DZA65_RS21535 at 4659.238 kb on + strand, within DZA65_RS21535 at 4659.362 kb on + strand at 4659.362 kb on + strand at 4659.363 kb on - strand at 4659.363 kb on - strand at 4659.412 kb on - strand at 4659.446 kb on + strand at 4659.447 kb on - strand at 4659.464 kb on - strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.578 kb on + strand at 4659.578 kb on + strand at 4659.579 kb on - strand at 4659.676 kb on + strand, within DZA65_RS21540 at 4659.676 kb on + strand, within DZA65_RS21540 at 4659.677 kb on - strand, within DZA65_RS21540 at 4659.677 kb on - strand, within DZA65_RS21540 at 4659.677 kb on - strand, within DZA65_RS21540 at 4659.682 kb on + strand, within DZA65_RS21540 at 4659.682 kb on + strand, within DZA65_RS21540 at 4659.682 kb on + strand, within DZA65_RS21540 at 4659.682 kb on + strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.719 kb on - strand, within DZA65_RS21540 at 4659.883 kb on + strand, within DZA65_RS21540 at 4659.941 kb on + strand, within DZA65_RS21540 at 4659.942 kb on - strand, within DZA65_RS21540 at 4660.006 kb on + strand, within DZA65_RS21540 at 4660.006 kb on + strand, within DZA65_RS21540 at 4660.006 kb on + strand, within DZA65_RS21540 at 4660.245 kb on + strand at 4660.245 kb on + strand at 4660.245 kb on + strand at 4660.246 kb on - strand at 4660.246 kb on - strand at 4660.261 kb on + strand at 4660.262 kb on - strand at 4660.262 kb on - strand at 4660.262 kb on - strand at 4660.262 kb on - strand at 4660.267 kb on + strand at 4660.268 kb on - strand at 4660.277 kb on + strand at 4660.331 kb on + strand, within DZA65_RS21545 at 4660.332 kb on - strand, within DZA65_RS21545 at 4660.343 kb on - strand, within DZA65_RS21545 at 4660.382 kb on - strand, within DZA65_RS21545 at 4660.646 kb on + strand, within DZA65_RS21545 at 4660.700 kb on + strand at 4660.701 kb on - strand at 4660.701 kb on - strand at 4660.701 kb on - strand at 4660.701 kb on - strand at 4660.701 kb on - strand at 4660.701 kb on - strand at 4660.701 kb on - strand at 4660.734 kb on + strand at 4660.734 kb on + strand at 4660.735 kb on - strand at 4660.748 kb on + strand at 4660.748 kb on + strand at 4660.749 kb on - strand at 4660.749 kb on - strand at 4660.749 kb on - strand at 4660.753 kb on + strand at 4660.753 kb on + strand at 4660.753 kb on + strand at 4660.753 kb on + strand at 4660.754 kb on - strand at 4660.754 kb on - strand at 4660.754 kb on - strand at 4660.754 kb on - strand at 4660.809 kb on + strand at 4660.810 kb on - strand at 4660.810 kb on - strand at 4660.831 kb on + strand at 4660.831 kb on + strand at 4660.832 kb on - strand at 4660.832 kb on - strand at 4660.841 kb on + strand at 4660.841 kb on + strand at 4660.841 kb on + strand at 4660.841 kb on + strand at 4660.841 kb on + strand at 4660.842 kb on - strand at 4660.844 kb on + strand at 4660.845 kb on - strand at 4660.845 kb on - strand at 4660.845 kb on - strand at 4660.845 kb on - strand at 4660.847 kb on + strand at 4660.848 kb on - strand at 4660.848 kb on - strand at 4660.900 kb on + strand at 4660.900 kb on + strand at 4660.900 kb on + strand at 4660.965 kb on + strand, within DZA65_RS21550 at 4660.965 kb on + strand, within DZA65_RS21550 at 4660.965 kb on + strand, within DZA65_RS21550 at 4661.022 kb on + strand, within DZA65_RS21550 at 4661.022 kb on + strand, within DZA65_RS21550 at 4661.023 kb on - strand, within DZA65_RS21550 at 4661.023 kb on - strand, within DZA65_RS21550 at 4661.023 kb on - strand, within DZA65_RS21550 at 4661.024 kb on + strand, within DZA65_RS21550 at 4661.025 kb on - strand, within DZA65_RS21550 at 4661.058 kb on + strand, within DZA65_RS21550 at 4661.130 kb on + strand, within DZA65_RS21550 at 4661.130 kb on + strand, within DZA65_RS21550 at 4661.131 kb on - strand, within DZA65_RS21550 at 4661.131 kb on - strand, within DZA65_RS21550 at 4661.131 kb on - strand, within DZA65_RS21550 at 4661.183 kb on + strand, within DZA65_RS21550 at 4661.184 kb on - strand, within DZA65_RS21550 at 4661.244 kb on + strand, within DZA65_RS21550 at 4661.264 kb on + strand, within DZA65_RS21550 at 4661.265 kb on - strand, within DZA65_RS21550
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 4,658,601 + DZA65_RS21535 0.20 +2.1 4,658,601 + DZA65_RS21535 0.20 -1.1 4,658,601 + DZA65_RS21535 0.20 -1.2 4,658,601 + DZA65_RS21535 0.20 -0.1 4,658,601 + DZA65_RS21535 0.20 -1.4 4,658,601 + -1.1 4,658,602 - DZA65_RS21535 0.20 +0.3 4,658,602 - DZA65_RS21535 0.20 +0.2 4,658,602 - DZA65_RS21535 0.20 +1.0 4,658,602 - DZA65_RS21535 0.20 -1.5 4,658,602 - DZA65_RS21535 0.20 -0.4 4,658,602 - DZA65_RS21535 0.20 +1.1 4,658,602 - DZA65_RS21535 0.20 -2.2 4,658,602 - DZA65_RS21535 0.20 +0.9 4,658,602 - DZA65_RS21535 0.20 -3.4 4,658,757 + DZA65_RS21535 0.35 -1.2 4,658,757 + DZA65_RS21535 0.35 +1.1 4,658,757 + DZA65_RS21535 0.35 -1.1 4,658,757 + DZA65_RS21535 0.35 -1.9 4,658,757 + DZA65_RS21535 0.35 +0.6 4,658,757 + DZA65_RS21535 0.35 -1.9 4,658,757 + DZA65_RS21535 0.35 +1.6 4,658,757 + DZA65_RS21535 0.35 -1.7 4,658,757 + DZA65_RS21535 0.35 -0.4 4,658,757 + DZA65_RS21535 0.35 -1.2 4,658,757 + DZA65_RS21535 0.35 +0.7 4,658,757 + DZA65_RS21535 0.35 -0.1 4,658,757 + DZA65_RS21535 0.35 +0.1 4,658,757 + DZA65_RS21535 0.35 -0.9 4,658,757 + DZA65_RS21535 0.35 -0.3 4,658,757 + DZA65_RS21535 0.35 -0.4 4,658,757 + DZA65_RS21535 0.35 +1.4 4,658,757 + DZA65_RS21535 0.35 -2.1 4,658,757 + DZA65_RS21535 0.35 +1.3 4,658,757 + DZA65_RS21535 0.35 -0.9 4,658,758 - DZA65_RS21535 0.35 +1.8 4,658,758 - DZA65_RS21535 0.35 +0.1 4,658,758 - DZA65_RS21535 0.35 +1.2 4,658,758 - DZA65_RS21535 0.35 -1.9 4,658,758 - DZA65_RS21535 0.35 +0.3 4,658,758 - DZA65_RS21535 0.35 -0.1 4,658,758 - DZA65_RS21535 0.35 +0.9 4,658,758 - DZA65_RS21535 0.35 -1.4 4,658,758 - DZA65_RS21535 0.35 +1.2 4,658,758 - DZA65_RS21535 0.35 -1.2 4,658,758 - DZA65_RS21535 0.35 +1.1 4,658,758 - DZA65_RS21535 0.35 -0.7 4,658,758 - DZA65_RS21535 0.35 -1.9 4,658,938 + DZA65_RS21535 0.53 -0.4 4,658,939 - DZA65_RS21535 0.53 -0.1 4,658,939 - DZA65_RS21535 0.53 -1.2 4,658,951 + DZA65_RS21535 0.54 -0.3 4,658,979 - DZA65_RS21535 0.57 -0.1 4,658,979 - DZA65_RS21535 0.57 -1.4 4,659,018 + DZA65_RS21535 0.61 +0.6 4,659,018 + DZA65_RS21535 0.61 -0.8 4,659,018 + DZA65_RS21535 0.61 +0.6 4,659,018 + DZA65_RS21535 0.61 +2.0 4,659,019 - DZA65_RS21535 0.61 -0.1 4,659,019 - DZA65_RS21535 0.61 -1.1 4,659,019 - DZA65_RS21535 0.61 -0.7 4,659,019 - DZA65_RS21535 0.61 -0.5 4,659,047 + DZA65_RS21535 0.64 +0.5 4,659,048 - DZA65_RS21535 0.64 -0.1 4,659,048 - DZA65_RS21535 0.64 +0.9 4,659,238 + DZA65_RS21535 0.83 -1.3 4,659,362 + -1.4 4,659,362 + +0.5 4,659,363 - +0.9 4,659,363 - -1.7 4,659,412 - +0.4 4,659,446 + +0.7 4,659,447 - -2.1 4,659,464 - +0.4 4,659,516 + +1.8 4,659,516 + +0.9 4,659,516 + +2.5 4,659,516 + +0.2 4,659,516 + -0.3 4,659,516 + -0.6 4,659,517 - +1.8 4,659,517 - +0.5 4,659,517 - -1.1 4,659,517 - +0.6 4,659,517 - +0.2 4,659,517 - +1.1 4,659,578 + +0.4 4,659,578 + -0.3 4,659,579 - -0.6 4,659,676 + DZA65_RS21540 0.20 -0.1 4,659,676 + DZA65_RS21540 0.20 +0.7 4,659,677 - DZA65_RS21540 0.21 -0.1 4,659,677 - DZA65_RS21540 0.21 -0.4 4,659,677 - DZA65_RS21540 0.21 -1.4 4,659,682 + DZA65_RS21540 0.21 -2.4 4,659,682 + DZA65_RS21540 0.21 -0.6 4,659,682 + DZA65_RS21540 0.21 +0.2 4,659,682 + DZA65_RS21540 0.21 +0.8 4,659,683 - DZA65_RS21540 0.21 +0.1 4,659,683 - -0.5 4,659,683 - DZA65_RS21540 0.21 +1.7 4,659,683 - DZA65_RS21540 0.21 -0.6 4,659,683 - DZA65_RS21540 0.21 -0.0 4,659,683 - DZA65_RS21540 0.21 -1.2 4,659,683 - DZA65_RS21540 0.21 +0.5 4,659,719 - DZA65_RS21540 0.26 +1.4 4,659,883 + DZA65_RS21540 0.48 +0.7 4,659,941 + DZA65_RS21540 0.56 -1.2 4,659,942 - DZA65_RS21540 0.56 -0.1 4,660,006 + DZA65_RS21540 0.65 +0.4 4,660,006 + DZA65_RS21540 0.65 +1.2 4,660,006 + DZA65_RS21540 0.65 +1.6 4,660,245 + -0.9 4,660,245 + -0.1 4,660,245 + -1.0 4,660,246 - +0.1 4,660,246 - -0.7 4,660,261 + +0.1 4,660,262 - +1.7 4,660,262 - +0.9 4,660,262 - +1.2 4,660,262 - +0.5 4,660,267 + -0.1 4,660,268 - -0.7 4,660,277 + -2.2 4,660,331 + DZA65_RS21545 0.11 -1.2 4,660,332 - DZA65_RS21545 0.12 +1.2 4,660,343 - DZA65_RS21545 0.14 -0.2 4,660,382 - DZA65_RS21545 0.23 -0.1 4,660,646 + DZA65_RS21545 0.85 +0.3 4,660,700 + -0.5 4,660,701 - +2.7 4,660,701 - -0.9 4,660,701 - -0.1 4,660,701 - +0.9 4,660,701 - -0.1 4,660,701 - +0.6 4,660,701 - -0.5 4,660,734 + +1.0 4,660,734 + +1.8 4,660,735 - -0.4 4,660,748 + +0.2 4,660,748 + +1.6 4,660,749 - -0.2 4,660,749 - -0.8 4,660,749 - +0.9 4,660,753 + -3.0 4,660,753 + -0.1 4,660,753 + +0.8 4,660,753 + -0.9 4,660,754 - -0.4 4,660,754 - -0.7 4,660,754 - -1.3 4,660,754 - +0.7 4,660,809 + -0.0 4,660,810 - +1.3 4,660,810 - +1.2 4,660,831 + -2.1 4,660,831 + +0.3 4,660,832 - -0.9 4,660,832 - -1.1 4,660,841 + -0.3 4,660,841 + -2.2 4,660,841 + -0.4 4,660,841 + -1.1 4,660,841 + +1.9 4,660,842 - -0.0 4,660,844 + -2.1 4,660,845 - +0.5 4,660,845 - -0.1 4,660,845 - -1.1 4,660,845 - -1.3 4,660,847 + -1.2 4,660,848 - -0.7 4,660,848 - +0.7 4,660,900 + -1.9 4,660,900 + -0.1 4,660,900 + -1.4 4,660,965 + DZA65_RS21550 0.18 -1.9 4,660,965 + DZA65_RS21550 0.18 +0.5 4,660,965 + DZA65_RS21550 0.18 +0.9 4,661,022 + DZA65_RS21550 0.28 +0.1 4,661,022 + DZA65_RS21550 0.28 -0.1 4,661,023 - DZA65_RS21550 0.28 +1.5 4,661,023 - DZA65_RS21550 0.28 -0.8 4,661,023 - DZA65_RS21550 0.28 +0.8 4,661,024 + DZA65_RS21550 0.28 -1.1 4,661,025 - DZA65_RS21550 0.28 -0.2 4,661,058 + DZA65_RS21550 0.34 +0.4 4,661,130 + DZA65_RS21550 0.46 -0.7 4,661,130 + DZA65_RS21550 0.46 -1.4 4,661,131 - DZA65_RS21550 0.46 -0.8 4,661,131 - DZA65_RS21550 0.46 -1.7 4,661,131 - DZA65_RS21550 0.46 +0.3 4,661,183 + DZA65_RS21550 0.55 -2.7 4,661,184 - DZA65_RS21550 0.55 +0.1 4,661,244 + DZA65_RS21550 0.65 -0.8 4,661,264 + DZA65_RS21550 0.69 -0.4 4,661,265 - DZA65_RS21550 0.69 +1.8
Or see this region's nucleotide sequence