Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS20885 and DZA65_RS20890 are separated by 44 nucleotides DZA65_RS20890 and DZA65_RS20895 are separated by 143 nucleotides DZA65_RS20895 and DZA65_RS20900 are separated by 155 nucleotides DZA65_RS20900 and DZA65_RS20905 are separated by 343 nucleotides
DZA65_RS20885: DZA65_RS20885 - maltodextrin phosphorylase, at 4,509,527 to 4,511,950
_RS20885
DZA65_RS20890: DZA65_RS20890 - DeoR/GlpR family transcriptional regulator, at 4,511,995 to 4,512,753
_RS20890
DZA65_RS20895: DZA65_RS20895 - rhomboid family intramembrane serine protease GlpG, at 4,512,897 to 4,513,721
_RS20895
DZA65_RS20900: DZA65_RS20900 - thiosulfate sulfurtransferase GlpE, at 4,513,877 to 4,514,197
_RS20900
DZA65_RS20905: DZA65_RS20905 - glycerol-3-phosphate dehydrogenase, at 4,514,541 to 4,516,040
_RS20905
Position (kb) 4512
4513
4514 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4511.966 kb on + strand at 4511.966 kb on + strand at 4511.967 kb on - strand at 4512.019 kb on - strand at 4512.055 kb on + strand at 4512.198 kb on - strand, within DZA65_RS20890 at 4512.226 kb on - strand, within DZA65_RS20890 at 4512.475 kb on - strand, within DZA65_RS20890 at 4512.698 kb on + strand at 4512.699 kb on - strand at 4512.796 kb on + strand at 4512.796 kb on + strand at 4512.797 kb on - strand at 4512.797 kb on - strand at 4512.840 kb on + strand at 4512.841 kb on - strand at 4512.848 kb on - strand at 4512.866 kb on + strand at 4512.866 kb on + strand at 4512.867 kb on - strand at 4512.867 kb on - strand at 4512.867 kb on - strand at 4512.880 kb on + strand at 4512.881 kb on - strand at 4512.887 kb on + strand at 4512.888 kb on - strand at 4512.888 kb on - strand at 4512.888 kb on - strand at 4512.918 kb on - strand at 4513.000 kb on + strand, within DZA65_RS20895 at 4513.093 kb on + strand, within DZA65_RS20895 at 4513.093 kb on + strand, within DZA65_RS20895 at 4513.093 kb on + strand, within DZA65_RS20895 at 4513.093 kb on + strand, within DZA65_RS20895 at 4513.094 kb on - strand, within DZA65_RS20895 at 4513.094 kb on - strand, within DZA65_RS20895 at 4513.094 kb on - strand, within DZA65_RS20895 at 4513.094 kb on - strand, within DZA65_RS20895 at 4513.094 kb on - strand, within DZA65_RS20895 at 4513.108 kb on + strand at 4513.108 kb on + strand, within DZA65_RS20895 at 4513.108 kb on + strand, within DZA65_RS20895 at 4513.108 kb on + strand, within DZA65_RS20895 at 4513.108 kb on + strand, within DZA65_RS20895 at 4513.109 kb on - strand, within DZA65_RS20895 at 4513.109 kb on - strand, within DZA65_RS20895 at 4513.109 kb on - strand, within DZA65_RS20895 at 4513.135 kb on + strand, within DZA65_RS20895 at 4513.135 kb on + strand, within DZA65_RS20895 at 4513.135 kb on + strand, within DZA65_RS20895 at 4513.136 kb on - strand, within DZA65_RS20895 at 4513.136 kb on - strand, within DZA65_RS20895 at 4513.159 kb on - strand, within DZA65_RS20895 at 4513.159 kb on - strand, within DZA65_RS20895 at 4513.243 kb on + strand, within DZA65_RS20895 at 4513.243 kb on + strand, within DZA65_RS20895 at 4513.243 kb on + strand, within DZA65_RS20895 at 4513.244 kb on - strand, within DZA65_RS20895 at 4513.351 kb on - strand, within DZA65_RS20895 at 4513.371 kb on + strand, within DZA65_RS20895 at 4513.371 kb on + strand, within DZA65_RS20895 at 4513.396 kb on + strand, within DZA65_RS20895 at 4513.396 kb on + strand, within DZA65_RS20895 at 4513.396 kb on + strand, within DZA65_RS20895 at 4513.397 kb on - strand, within DZA65_RS20895 at 4513.465 kb on + strand, within DZA65_RS20895 at 4513.466 kb on - strand, within DZA65_RS20895 at 4513.529 kb on - strand, within DZA65_RS20895 at 4513.632 kb on - strand, within DZA65_RS20895 at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.666 kb on + strand at 4513.666 kb on + strand at 4513.666 kb on + strand at 4513.666 kb on + strand at 4513.666 kb on + strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.728 kb on - strand at 4513.728 kb on - strand at 4513.755 kb on - strand at 4513.755 kb on - strand at 4513.755 kb on - strand at 4513.768 kb on + strand at 4513.769 kb on - strand at 4513.778 kb on - strand at 4513.778 kb on - strand at 4513.819 kb on + strand at 4513.819 kb on + strand at 4513.820 kb on - strand at 4513.820 kb on - strand at 4513.828 kb on + strand at 4513.828 kb on + strand at 4513.828 kb on + strand at 4513.878 kb on + strand at 4513.941 kb on + strand, within DZA65_RS20900 at 4513.942 kb on - strand, within DZA65_RS20900 at 4513.942 kb on - strand, within DZA65_RS20900 at 4513.942 kb on - strand, within DZA65_RS20900 at 4513.942 kb on - strand, within DZA65_RS20900 at 4513.942 kb on - strand, within DZA65_RS20900 at 4513.942 kb on - strand, within DZA65_RS20900 at 4513.942 kb on - strand, within DZA65_RS20900 at 4513.944 kb on - strand, within DZA65_RS20900 at 4513.963 kb on + strand, within DZA65_RS20900 at 4513.964 kb on - strand, within DZA65_RS20900 at 4513.964 kb on - strand, within DZA65_RS20900 at 4513.984 kb on + strand, within DZA65_RS20900 at 4514.004 kb on + strand, within DZA65_RS20900 at 4514.004 kb on + strand, within DZA65_RS20900 at 4514.004 kb on + strand, within DZA65_RS20900 at 4514.005 kb on - strand, within DZA65_RS20900 at 4514.126 kb on - strand, within DZA65_RS20900 at 4514.126 kb on - strand, within DZA65_RS20900 at 4514.126 kb on - strand, within DZA65_RS20900 at 4514.161 kb on - strand, within DZA65_RS20900 at 4514.161 kb on - strand, within DZA65_RS20900 at 4514.209 kb on + strand at 4514.220 kb on - strand at 4514.241 kb on + strand at 4514.242 kb on - strand at 4514.264 kb on + strand at 4514.264 kb on + strand at 4514.264 kb on + strand at 4514.264 kb on + strand at 4514.265 kb on - strand at 4514.308 kb on + strand at 4514.309 kb on - strand at 4514.309 kb on - strand at 4514.309 kb on - strand at 4514.309 kb on - strand at 4514.348 kb on - strand at 4514.356 kb on + strand at 4514.356 kb on + strand at 4514.356 kb on + strand at 4514.356 kb on + strand at 4514.356 kb on + strand at 4514.357 kb on - strand at 4514.357 kb on - strand at 4514.357 kb on - strand at 4514.357 kb on - strand at 4514.357 kb on - strand at 4514.357 kb on - strand at 4514.362 kb on + strand at 4514.412 kb on - strand at 4514.412 kb on - strand at 4514.508 kb on + strand at 4514.508 kb on + strand at 4514.508 kb on + strand at 4514.508 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 4,511,966 + -0.1 4,511,966 + -1.3 4,511,967 - +0.7 4,512,019 - +0.6 4,512,055 + -1.1 4,512,198 - DZA65_RS20890 0.27 +0.9 4,512,226 - DZA65_RS20890 0.30 -1.5 4,512,475 - DZA65_RS20890 0.63 -0.8 4,512,698 + +1.9 4,512,699 - -0.1 4,512,796 + -0.7 4,512,796 + -0.4 4,512,797 - +0.6 4,512,797 - -1.1 4,512,840 + -0.6 4,512,841 - +0.2 4,512,848 - -1.5 4,512,866 + +0.9 4,512,866 + -1.7 4,512,867 - -2.1 4,512,867 - -0.1 4,512,867 - +0.1 4,512,880 + +1.9 4,512,881 - +0.3 4,512,887 + -0.1 4,512,888 - -1.2 4,512,888 - -1.0 4,512,888 - +0.4 4,512,918 - -0.0 4,513,000 + DZA65_RS20895 0.12 +0.1 4,513,093 + DZA65_RS20895 0.24 -0.1 4,513,093 + DZA65_RS20895 0.24 -0.5 4,513,093 + DZA65_RS20895 0.24 +1.7 4,513,093 + DZA65_RS20895 0.24 -1.7 4,513,094 - DZA65_RS20895 0.24 -0.7 4,513,094 - DZA65_RS20895 0.24 +0.4 4,513,094 - DZA65_RS20895 0.24 +0.3 4,513,094 - DZA65_RS20895 0.24 +0.6 4,513,094 - DZA65_RS20895 0.24 -0.7 4,513,108 + -1.5 4,513,108 + DZA65_RS20895 0.26 +1.0 4,513,108 + DZA65_RS20895 0.26 +1.2 4,513,108 + DZA65_RS20895 0.26 +2.2 4,513,108 + DZA65_RS20895 0.26 -0.0 4,513,109 - DZA65_RS20895 0.26 -1.9 4,513,109 - DZA65_RS20895 0.26 -1.1 4,513,109 - DZA65_RS20895 0.26 -0.4 4,513,135 + DZA65_RS20895 0.29 -0.4 4,513,135 + DZA65_RS20895 0.29 -1.1 4,513,135 + DZA65_RS20895 0.29 +0.3 4,513,136 - DZA65_RS20895 0.29 -0.5 4,513,136 - DZA65_RS20895 0.29 -0.2 4,513,159 - DZA65_RS20895 0.32 +0.9 4,513,159 - DZA65_RS20895 0.32 +0.1 4,513,243 + DZA65_RS20895 0.42 -2.1 4,513,243 + DZA65_RS20895 0.42 +1.5 4,513,243 + DZA65_RS20895 0.42 +0.5 4,513,244 - DZA65_RS20895 0.42 -0.9 4,513,351 - DZA65_RS20895 0.55 -1.1 4,513,371 + DZA65_RS20895 0.57 -1.7 4,513,371 + DZA65_RS20895 0.57 +0.1 4,513,396 + DZA65_RS20895 0.60 -0.5 4,513,396 + DZA65_RS20895 0.60 +1.2 4,513,396 + DZA65_RS20895 0.60 -2.0 4,513,397 - DZA65_RS20895 0.61 +3.5 4,513,465 + DZA65_RS20895 0.69 +0.9 4,513,466 - DZA65_RS20895 0.69 +0.6 4,513,529 - DZA65_RS20895 0.77 +0.6 4,513,632 - DZA65_RS20895 0.89 -0.6 4,513,664 + -1.1 4,513,664 + -1.6 4,513,664 + +0.9 4,513,664 + -1.1 4,513,664 + -1.1 4,513,664 + -0.1 4,513,664 + -0.9 4,513,664 + -0.1 4,513,664 + -1.9 4,513,664 + -1.5 4,513,664 + -0.5 4,513,665 - +0.9 4,513,665 - +1.2 4,513,665 - -0.1 4,513,665 - +0.1 4,513,665 - -0.5 4,513,665 - +0.1 4,513,665 - +0.9 4,513,665 - +0.1 4,513,665 - -0.2 4,513,665 - -0.4 4,513,665 - +0.9 4,513,665 - +0.3 4,513,665 - -0.4 4,513,665 - -0.1 4,513,665 - +0.3 4,513,665 - -1.5 4,513,665 - -0.7 4,513,665 - +0.5 4,513,665 - +1.1 4,513,665 - +2.2 4,513,665 - -0.7 4,513,665 - -0.6 4,513,665 - +2.5 4,513,666 + +0.9 4,513,666 + -1.5 4,513,666 + +0.3 4,513,666 + +0.7 4,513,666 + +0.3 4,513,667 - +2.0 4,513,667 - -1.1 4,513,667 - -0.7 4,513,667 - +0.6 4,513,667 - +0.3 4,513,667 - -0.4 4,513,667 - +0.1 4,513,728 - +0.9 4,513,728 - +1.9 4,513,755 - -2.3 4,513,755 - +1.5 4,513,755 - +1.4 4,513,768 + -1.7 4,513,769 - -0.9 4,513,778 - +1.7 4,513,778 - -1.0 4,513,819 + +0.9 4,513,819 + +0.0 4,513,820 - -0.4 4,513,820 - -1.1 4,513,828 + -1.5 4,513,828 + -1.0 4,513,828 + -1.1 4,513,878 + +0.9 4,513,941 + DZA65_RS20900 0.20 -1.9 4,513,942 - DZA65_RS20900 0.20 +0.5 4,513,942 - DZA65_RS20900 0.20 +0.5 4,513,942 - DZA65_RS20900 0.20 -2.1 4,513,942 - DZA65_RS20900 0.20 -2.3 4,513,942 - DZA65_RS20900 0.20 +0.1 4,513,942 - DZA65_RS20900 0.20 +0.2 4,513,942 - DZA65_RS20900 0.20 -0.4 4,513,944 - DZA65_RS20900 0.21 +1.4 4,513,963 + DZA65_RS20900 0.27 -0.6 4,513,964 - DZA65_RS20900 0.27 -2.1 4,513,964 - DZA65_RS20900 0.27 -0.4 4,513,984 + DZA65_RS20900 0.33 +0.3 4,514,004 + DZA65_RS20900 0.40 +1.3 4,514,004 + DZA65_RS20900 0.40 -1.4 4,514,004 + DZA65_RS20900 0.40 -0.5 4,514,005 - DZA65_RS20900 0.40 -0.1 4,514,126 - DZA65_RS20900 0.78 +0.9 4,514,126 - DZA65_RS20900 0.78 +0.1 4,514,126 - DZA65_RS20900 0.78 -1.1 4,514,161 - DZA65_RS20900 0.88 -2.3 4,514,161 - DZA65_RS20900 0.88 +0.1 4,514,209 + -1.1 4,514,220 - -0.7 4,514,241 + +0.9 4,514,242 - -0.8 4,514,264 + -1.5 4,514,264 + +0.0 4,514,264 + +0.9 4,514,264 + -1.5 4,514,265 - +1.7 4,514,308 + +0.9 4,514,309 - -1.6 4,514,309 - -0.9 4,514,309 - +0.0 4,514,309 - -0.1 4,514,348 - -0.5 4,514,356 + -1.4 4,514,356 + +2.4 4,514,356 + -0.1 4,514,356 + +0.5 4,514,356 + -1.4 4,514,357 - -0.9 4,514,357 - +1.9 4,514,357 - -0.0 4,514,357 - +0.4 4,514,357 - -0.8 4,514,357 - +0.9 4,514,362 + -0.1 4,514,412 - +0.3 4,514,412 - +0.7 4,514,508 + -0.4 4,514,508 + -1.1 4,514,508 + +1.1 4,514,508 + +0.3
Or see this region's nucleotide sequence