Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18950

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
4,092,562	+		DZA65_RS18945	0.33	+0.4
4,092,562	+		DZA65_RS18945	0.33	+1.2
4,092,562	+		DZA65_RS18945	0.33	-0.8
4,092,562	+		DZA65_RS18945	0.33	+1.2
4,092,563	-		DZA65_RS18945	0.33	-2.3
4,092,664	+		DZA65_RS18945	0.42	+1.1
4,092,664	+		DZA65_RS18945	0.42	+0.5
4,092,664	+		DZA65_RS18945	0.42	+0.7
4,092,664	+		DZA65_RS18945	0.42	-0.1
4,092,741	+		DZA65_RS18945	0.48	+0.3
4,092,785	+		DZA65_RS18945	0.52	+0.3
4,092,785	+		DZA65_RS18945	0.52	-1.3
4,092,785	+		DZA65_RS18945	0.52	+2.0
4,092,786	-		DZA65_RS18945	0.52	+0.6
4,092,786	-		DZA65_RS18945	0.52	-0.3
4,092,786	-		DZA65_RS18945	0.52	-0.8
4,092,786	-		DZA65_RS18945	0.52	-0.8
4,092,798	+		DZA65_RS18945	0.53	-0.6
4,092,798	+		DZA65_RS18945	0.53	+1.4
4,092,799	-		DZA65_RS18945	0.53	-2.3
4,092,799	-		DZA65_RS18945	0.53	-1.7
4,092,799	-		DZA65_RS18945	0.53	+2.2
4,092,859	+		DZA65_RS18945	0.58	-0.6
4,093,027	+		DZA65_RS18945	0.73	-0.8
4,093,027	+		DZA65_RS18945	0.73	-0.8
4,093,028	-		DZA65_RS18945	0.73	+0.7
4,093,028	-		DZA65_RS18945	0.73	-0.3
4,093,241	-				-1.3
4,093,287	+				+0.2
4,093,287	+				-0.8
4,093,287	+				+0.3
4,093,287	+				-0.9
4,093,291	+				+0.4
4,093,291	+				+0.1
4,093,291	+				-0.4
4,093,291	+				+1.7
4,093,292	-				+1.0
4,093,292	-				-0.6
4,093,292	-				+0.2
4,093,312	+				-0.6
4,093,312	+				-2.1
4,093,312	+				+0.3
4,093,312	+				+1.2
4,093,312	+				-0.9
4,093,312	+				+0.4
4,093,313	-				+1.0
4,093,313	-				-2.1
4,093,313	-				-1.8
4,093,313	-				-0.4
4,093,430	+				+0.2
4,093,430	+				+1.5
4,093,430	+				-0.3
4,093,431	-				+0.0
4,093,431	-				-2.7
4,093,431	-				-0.6
4,093,431	-				+0.2
4,093,431	-				+1.7
4,093,431	-				+1.0
4,093,439	+				-0.5
4,093,440	-				-1.4
4,093,448	+				+1.7
4,093,472	-				+1.5
4,093,488	+				+0.9
4,093,488	+				+1.1
4,093,489	-				-0.6
4,093,489	-				+0.7
4,093,489	-				+1.0
4,093,507	+				-2.7
4,093,507	+				+0.7
4,093,507	+				+0.7
4,093,508	-				-2.1
4,093,508	-				-0.8
4,093,519	+				+0.3
4,093,519	+				-0.1
4,093,520	-				+0.4
4,093,520	-				+0.5
4,093,567	+		DZA65_RS18950	0.12	-0.8
4,093,567	+		DZA65_RS18950	0.12	+1.2
4,093,567	+		DZA65_RS18950	0.12	+1.3
4,093,567	+		DZA65_RS18950	0.12	+1.3
4,093,568	-		DZA65_RS18950	0.13	-0.8
4,093,597	-		DZA65_RS18950	0.19	-0.3
4,093,597	-		DZA65_RS18950	0.19	-1.6
4,093,619	+		DZA65_RS18950	0.23	-1.8
4,093,619	+		DZA65_RS18950	0.23	+0.2
4,093,619	+		DZA65_RS18950	0.23	+0.2
4,093,619	+		DZA65_RS18950	0.23	-0.6
4,093,620	-		DZA65_RS18950	0.24	+0.4
4,093,620	-		DZA65_RS18950	0.24	-0.4
4,093,620	-		DZA65_RS18950	0.24	+0.1
4,093,620	-		DZA65_RS18950	0.24	-0.6
4,093,620	-		DZA65_RS18950	0.24	-0.6
4,093,620	-		DZA65_RS18950	0.24	-0.8
4,093,620	-		DZA65_RS18950	0.24	+1.3
4,093,647	-		DZA65_RS18950	0.29	-0.0
4,093,647	-		DZA65_RS18950	0.29	-0.5
4,093,647	-		DZA65_RS18950	0.29	-2.3
4,093,647	-		DZA65_RS18950	0.29	-3.4
4,093,691	-		DZA65_RS18950	0.39	-0.1
4,093,747	-		DZA65_RS18950	0.50	+0.3
4,093,806	+		DZA65_RS18950	0.63	-1.0
4,093,806	+		DZA65_RS18950	0.63	-1.2
4,093,806	+		DZA65_RS18950	0.63	+1.2
4,093,807	-		DZA65_RS18950	0.63	+0.2
4,093,807	-		DZA65_RS18950	0.63	-1.3
4,093,807	-		DZA65_RS18950	0.63	+1.7
4,093,807	-		DZA65_RS18950	0.63	-1.6
4,093,807	-		DZA65_RS18950	0.63	+1.4
4,093,907	-		DZA65_RS18950	0.84	+0.4
4,093,963	-				-1.3
4,093,963	-				+0.7
4,093,963	-				-0.3
4,093,963	-				-0.7
4,093,987	+				+0.6
4,093,987	+				-0.7
4,093,987	+				+0.6
4,093,987	+				+2.1
4,093,987	+				-1.3
4,093,987	+				-0.3
4,093,988	-				+2.0
4,094,284	+		DZA65_RS18955	0.43	+0.2
4,094,284	+				+0.2
4,094,285	-		DZA65_RS18955	0.43	-0.1
4,094,389	+		DZA65_RS18955	0.59	-1.6
4,094,390	-		DZA65_RS18955	0.59	+0.5
4,094,396	+		DZA65_RS18955	0.60	+1.0
4,094,397	-		DZA65_RS18955	0.60	-0.1
4,094,397	-		DZA65_RS18955	0.60	+0.7
4,094,397	-		DZA65_RS18955	0.60	-0.9
4,094,407	+		DZA65_RS18955	0.61	-1.3
4,094,425	+		DZA65_RS18955	0.64	-0.0
4,094,425	+		DZA65_RS18955	0.64	+1.2
4,094,426	-		DZA65_RS18955	0.64	+0.8
4,094,426	-		DZA65_RS18955	0.64	-0.8
4,094,467	+		DZA65_RS18955	0.70	-0.2
4,094,467	+		DZA65_RS18955	0.70	+0.2
4,094,567	-		DZA65_RS18955	0.85	-1.6
4,094,600	+		DZA65_RS18955	0.89	+0.7
4,094,600	+				-1.8
4,094,600	+		DZA65_RS18955	0.89	-0.3
4,094,600	+		DZA65_RS18955	0.89	+0.7
4,094,600	+		DZA65_RS18955	0.89	+0.5
4,094,601	-		DZA65_RS18955	0.90	+3.1
4,094,601	-		DZA65_RS18955	0.90	+1.5
4,094,604	+				-1.4
4,094,604	+				-1.3
4,094,604	+				-0.3
4,094,604	+				-2.1
4,094,604	+				+1.2
4,094,604	+				+2.0
4,094,605	-				+0.2
4,094,605	-				-1.8
4,094,667	+				-0.3
4,094,667	+				-0.2
4,094,668	-				+0.5
4,094,668	-				-0.8
4,094,669	+				-0.3
4,094,669	+				+1.5
4,094,670	-				-1.3
4,094,670	-				+0.7
4,094,670	-				-0.3
4,094,694	+				+0.7
4,094,714	-				-0.8
4,094,739	+				+3.1
4,094,739	+				+0.5
4,094,739	+				+1.3
4,094,740	-				+1.3
4,094,750	+				-0.1
4,094,750	+				+0.3
4,094,750	+				-0.3
4,094,750	+				-1.5
4,094,751	-				-2.7
4,094,751	-				-1.5
4,094,751	-				-0.1
4,094,751	-				+0.4
4,094,751	-				+0.4
4,094,751	-				-2.3
4,094,804	+				+0.7
4,094,804	+				-0.8
4,094,804	+				+0.6
4,094,804	+				-1.1
4,094,804	+				-0.0
4,094,805	-				-2.8
4,094,805	-				-1.0
4,094,805	-				+1.7
4,094,861	+				+0.4
4,094,862	-				-0.5
4,094,908	+				+0.2
4,094,908	+				-0.6
4,094,909	-				-0.0
4,094,909	-				-1.4
4,094,909	-				-0.3
4,094,909	-				+0.4
4,094,916	-				-0.7