Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18835

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
4,064,835	+		DZA65_RS18830	0.76	-2.1
4,064,835	+		DZA65_RS18830	0.76	-0.9
4,064,835	+		DZA65_RS18830	0.76	+0.2
4,064,836	-		DZA65_RS18830	0.77	+0.7
4,064,836	-		DZA65_RS18830	0.77	-1.8
4,064,836	-		DZA65_RS18830	0.77	+1.3
4,064,838	+		DZA65_RS18830	0.77	+1.5
4,064,838	+		DZA65_RS18830	0.77	+0.7
4,064,845	+		DZA65_RS18830	0.77	-0.1
4,064,846	-		DZA65_RS18830	0.77	-0.6
4,064,909	-		DZA65_RS18830	0.78	+1.7
4,064,909	-		DZA65_RS18830	0.78	+0.2
4,065,245	+		DZA65_RS18830	0.87	+1.2
4,065,329	+		DZA65_RS18830	0.89	+0.1
4,065,330	-		DZA65_RS18830	0.89	-0.8
4,065,376	+				-0.4
4,065,376	+				+2.4
4,065,377	-				+0.1
4,065,377	-				+1.5
4,065,377	-				+2.7
4,065,377	-				-0.6
4,065,377	-				-0.0
4,065,377	-				+0.1
4,065,377	-				+1.7
4,065,377	-				+0.1
4,065,682	+				-2.1
4,065,683	-				+0.3
4,065,683	-				-0.0
4,065,683	-				-0.3
4,065,683	-				+0.2
4,065,697	+				-0.5
4,065,698	-				+3.6
4,065,740	+				+0.7
4,065,741	-				+2.7
4,065,759	+				+1.3
4,065,759	+				+0.6
4,065,759	+				+0.3
4,065,759	+				-0.6
4,065,759	+				+1.1
4,065,908	-				+0.9
4,065,925	+				+0.5
4,065,943	+				-0.3
4,065,943	+				+0.5
4,065,943	+				-1.6
4,065,943	+				-1.3
4,065,943	+				-1.9
4,065,944	-				-1.9
4,065,963	+				-1.3
4,065,963	+				+0.1
4,065,964	-				+0.7
4,065,964	-				+0.2
4,065,964	-				+0.0
4,065,964	-				-0.1
4,065,965	+				-0.9
4,065,966	-				-2.4
4,066,021	-				-0.5
4,066,101	+		DZA65_RS18835	0.11	+1.0
4,066,101	+		DZA65_RS18835	0.11	+2.2
4,066,101	+		DZA65_RS18835	0.11	+1.3
4,066,101	+		DZA65_RS18835	0.11	+0.6
4,066,101	+		DZA65_RS18835	0.11	-1.3
4,066,101	+		DZA65_RS18835	0.11	+1.2
4,066,101	+		DZA65_RS18835	0.11	+0.1
4,066,102	-				-2.7
4,066,102	-		DZA65_RS18835	0.11	-1.9
4,066,102	-		DZA65_RS18835	0.11	-0.1
4,066,102	-		DZA65_RS18835	0.11	-1.0
4,066,102	-		DZA65_RS18835	0.11	+0.6
4,066,102	-		DZA65_RS18835	0.11	-0.5
4,066,102	-		DZA65_RS18835	0.11	+0.1
4,066,119	+		DZA65_RS18835	0.12	+0.0
4,066,119	+		DZA65_RS18835	0.12	+0.4
4,066,120	-		DZA65_RS18835	0.12	-0.5
4,066,120	-		DZA65_RS18835	0.12	+1.0
4,066,132	-		DZA65_RS18835	0.12	+0.3
4,066,150	-		DZA65_RS18835	0.13	+1.2
4,066,175	+		DZA65_RS18835	0.14	-1.6
4,066,274	+				+1.2
4,066,275	-		DZA65_RS18835	0.18	+0.6
4,066,432	-		DZA65_RS18835	0.24	-0.4
4,066,434	+		DZA65_RS18835	0.24	+0.7
4,066,434	+		DZA65_RS18835	0.24	-2.9
4,066,679	+		DZA65_RS18835	0.34	+0.7
4,066,679	+		DZA65_RS18835	0.34	-2.4
4,066,679	+		DZA65_RS18835	0.34	+0.7
4,066,752	-		DZA65_RS18835	0.37	-0.3
4,066,758	+		DZA65_RS18835	0.37	-0.6
4,066,759	-		DZA65_RS18835	0.37	+2.3
4,066,792	-		DZA65_RS18835	0.39	-1.3
4,066,792	-		DZA65_RS18835	0.39	-2.3
4,066,792	-		DZA65_RS18835	0.39	-1.4
4,066,792	-		DZA65_RS18835	0.39	-1.1
4,067,067	+		DZA65_RS18835	0.50	+0.0
4,067,067	+		DZA65_RS18835	0.50	-0.3
4,067,068	-		DZA65_RS18835	0.50	-1.9
4,067,068	-		DZA65_RS18835	0.50	+0.1
4,067,077	-		DZA65_RS18835	0.50	-0.3
4,067,077	-		DZA65_RS18835	0.50	-0.6
4,067,142	+		DZA65_RS18835	0.53	-0.9
4,067,142	+		DZA65_RS18835	0.53	-0.9
4,067,142	+		DZA65_RS18835	0.53	-2.6
4,067,142	+		DZA65_RS18835	0.53	-1.9
4,067,143	-		DZA65_RS18835	0.53	-0.6
4,067,143	-		DZA65_RS18835	0.53	-0.2
4,067,143	-		DZA65_RS18835	0.53	+1.7
4,067,143	-		DZA65_RS18835	0.53	-0.0
4,067,189	-		DZA65_RS18835	0.55	+0.2
4,067,220	+		DZA65_RS18835	0.56	-0.0
4,067,221	-		DZA65_RS18835	0.56	+0.7
4,067,221	-		DZA65_RS18835	0.56	-0.3
4,067,349	-		DZA65_RS18835	0.61	-1.5
4,067,502	-				-2.1
4,067,609	-				+1.5
4,067,625	+		DZA65_RS18835	0.73	+0.7
4,067,625	+		DZA65_RS18835	0.73	-1.6
4,067,625	+		DZA65_RS18835	0.73	-2.2
4,067,625	+		DZA65_RS18835	0.73	-1.4
4,067,625	+		DZA65_RS18835	0.73	+1.3
4,067,625	+		DZA65_RS18835	0.73	-0.3
4,067,625	+		DZA65_RS18835	0.73	+0.7
4,067,625	+		DZA65_RS18835	0.73	-0.3
4,067,625	+		DZA65_RS18835	0.73	-0.9
4,067,625	+		DZA65_RS18835	0.73	-0.9
4,067,625	+		DZA65_RS18835	0.73	-0.7
4,067,625	+		DZA65_RS18835	0.73	+0.8
4,067,625	+		DZA65_RS18835	0.73	+1.6
4,067,626	-		DZA65_RS18835	0.73	+1.5
4,067,626	-		DZA65_RS18835	0.73	-2.6
4,067,626	-		DZA65_RS18835	0.73	+0.7
4,067,626	-		DZA65_RS18835	0.73	-0.0
4,067,626	-		DZA65_RS18835	0.73	+1.0
4,067,626	-		DZA65_RS18835	0.73	-2.0
4,067,626	-		DZA65_RS18835	0.73	-0.3
4,067,626	-		DZA65_RS18835	0.73	-1.3
4,067,626	-		DZA65_RS18835	0.73	+2.1
4,067,626	-		DZA65_RS18835	0.73	-0.1
4,067,626	-		DZA65_RS18835	0.73	+2.6
4,067,626	-		DZA65_RS18835	0.73	-1.6
4,067,626	-		DZA65_RS18835	0.73	-0.3
4,067,627	+		DZA65_RS18835	0.73	+0.1
4,067,627	+		DZA65_RS18835	0.73	+1.0
4,067,627	+		DZA65_RS18835	0.73	-0.6
4,067,628	-		DZA65_RS18835	0.73	-0.2
4,067,628	-		DZA65_RS18835	0.73	+1.5
4,067,628	-		DZA65_RS18835	0.73	+0.5
4,067,628	-		DZA65_RS18835	0.73	-1.9
4,067,628	-		DZA65_RS18835	0.73	+0.1
4,067,628	-		DZA65_RS18835	0.73	-1.3
4,067,658	+		DZA65_RS18835	0.74	-0.3
4,067,658	+		DZA65_RS18835	0.74	+0.4
4,067,658	+		DZA65_RS18835	0.74	-1.9
4,067,659	-		DZA65_RS18835	0.74	-2.8
4,067,659	-		DZA65_RS18835	0.74	-0.6
4,067,659	-		DZA65_RS18835	0.74	+1.4
4,067,659	-		DZA65_RS18835	0.74	+0.1
4,067,659	-		DZA65_RS18835	0.74	+1.5
4,067,672	+		DZA65_RS18835	0.74	+0.6
4,067,732	-		DZA65_RS18835	0.77	-0.3
4,067,732	-		DZA65_RS18835	0.77	+0.5
4,067,785	+		DZA65_RS18835	0.79	+1.2
4,067,785	+		DZA65_RS18835	0.79	+0.4
4,067,785	+		DZA65_RS18835	0.79	-2.6
4,067,785	+		DZA65_RS18835	0.79	+0.3
4,067,785	+		DZA65_RS18835	0.79	-0.8
4,067,785	+		DZA65_RS18835	0.79	-0.1
4,067,785	+		DZA65_RS18835	0.79	-1.9
4,067,785	+		DZA65_RS18835	0.79	-1.3
4,067,786	-		DZA65_RS18835	0.79	-0.0
4,067,786	-		DZA65_RS18835	0.79	-0.4
4,067,786	-		DZA65_RS18835	0.79	-1.7
4,067,786	-		DZA65_RS18835	0.79	-1.6
4,067,786	-		DZA65_RS18835	0.79	-1.3
4,067,786	-		DZA65_RS18835	0.79	-0.0
4,067,786	-		DZA65_RS18835	0.79	-0.3
4,067,787	+		DZA65_RS18835	0.79	+1.5
4,067,814	-		DZA65_RS18835	0.80	+2.1
4,067,943	+		DZA65_RS18835	0.85	-0.7
4,067,943	+		DZA65_RS18835	0.85	-1.9
4,067,943	+		DZA65_RS18835	0.85	+0.9
4,067,943	+		DZA65_RS18835	0.85	+0.1
4,067,943	+		DZA65_RS18835	0.85	-1.4
4,067,943	+		DZA65_RS18835	0.85	-0.9
4,067,943	+		DZA65_RS18835	0.85	+0.7
4,067,944	-		DZA65_RS18835	0.85	+2.9
4,067,944	-		DZA65_RS18835	0.85	-0.3
4,067,944	-		DZA65_RS18835	0.85	+1.8
4,067,944	-		DZA65_RS18835	0.85	+0.7
4,067,983	+		DZA65_RS18835	0.87	-0.9
4,067,983	+		DZA65_RS18835	0.87	-1.4
4,067,983	+		DZA65_RS18835	0.87	-1.3
4,067,984	-		DZA65_RS18835	0.87	+0.3
4,068,217	+				+0.5
4,068,363	+				+0.1
4,068,363	+				-0.3
4,068,363	+				+0.0
4,068,364	-				-1.3
4,068,364	-				+0.4
4,068,364	-				+0.4
4,068,364	-				+0.1
4,068,368	+				+0.2
4,068,368	+				-1.5
4,068,368	+				-1.6
4,068,368	+				-1.4
4,068,368	+				+1.2
4,068,369	-				+0.6
4,068,369	-				-0.1
4,068,369	-				-1.4
4,068,369	-				-0.5
4,068,370	+				+1.5
4,068,370	+				+0.7
4,068,370	+				+1.1
4,068,370	+				+0.6
4,068,370	+				+1.1
4,068,370	+				-1.1
4,068,370	+				-2.0
4,068,370	+				+0.3
4,068,371	-				-1.9
4,068,371	-				-0.6
4,068,371	-				-1.1
4,068,371	-				+0.6
4,068,371	-				+0.8
4,068,371	-				-1.1
4,068,373	+				+0.5
4,068,373	+				-0.4
4,068,373	+				-0.3
4,068,373	+				-0.9
4,068,373	+				-0.4
4,068,374	-				+0.7
4,068,374	-				-1.3
4,068,393	-				-1.1
4,068,426	+				+0.3
4,068,426	+				-1.3
4,068,426	+				-1.0
4,068,427	-				+2.3
4,068,427	-				+0.7
4,068,427	-				-3.3
4,068,427	-				-1.0
4,068,427	-				+0.3
4,068,427	-				+0.4
4,068,427	-				-0.4
4,068,444	-				-1.9
4,068,452	+				-0.6
4,068,453	-				+0.1
4,068,453	-				+1.7
4,068,456	+				+0.5
4,068,456	+				-0.9
4,068,457	-				-0.3
4,068,465	-				+0.2
4,068,467	+				-1.9
4,068,468	-				+0.4
4,068,468	-				-1.1
4,068,481	-				-0.6
4,068,502	+				-0.5
4,068,502	+				-0.9
4,068,523	+		DZA65_RS18840	0.10	+0.5
4,068,524	-		DZA65_RS18840	0.11	+0.1
4,068,662	+		DZA65_RS18840	0.36	+1.7
4,068,663	-		DZA65_RS18840	0.36	-1.6
4,068,663	-		DZA65_RS18840	0.36	+0.7
4,068,663	-		DZA65_RS18840	0.36	+1.5
4,068,663	-		DZA65_RS18840	0.36	+0.9
4,068,666	+		DZA65_RS18840	0.36	+1.4
4,068,667	-		DZA65_RS18840	0.37	-1.3
4,068,678	+		DZA65_RS18840	0.39	+0.0
4,068,679	-		DZA65_RS18840	0.39	+0.4
4,068,679	-		DZA65_RS18840	0.39	-1.1
4,068,682	+		DZA65_RS18840	0.39	-0.3
4,068,704	+		DZA65_RS18840	0.43	+0.0
4,068,835	+		DZA65_RS18840	0.67	-1.9
4,068,836	-		DZA65_RS18840	0.67	-0.3
4,068,841	+		DZA65_RS18840	0.68	-0.9
4,068,842	-		DZA65_RS18840	0.68	+1.1
4,068,902	-		DZA65_RS18840	0.79	-2.1
4,068,937	-		DZA65_RS18840	0.86	+1.8
4,069,037	+				-1.6
4,069,051	+				-1.6
4,069,051	+				-0.0
4,069,053	+				-0.9
4,069,054	-				+1.5
4,069,054	-				+1.9
4,069,063	+				-0.7
4,069,100	-				+0.1
4,069,207	+		DZA65_RS18845	0.20	+0.3
4,069,208	-				+1.5
4,069,211	+		DZA65_RS18845	0.20	+2.3
4,069,211	+		DZA65_RS18845	0.20	+1.7
4,069,212	-		DZA65_RS18845	0.20	+1.2
4,069,212	-		DZA65_RS18845	0.20	-2.4
4,069,212	-		DZA65_RS18845	0.20	-0.9
4,069,212	-		DZA65_RS18845	0.20	-0.9
4,069,263	-		DZA65_RS18845	0.25	-0.6
4,069,281	+		DZA65_RS18845	0.27	+1.5
4,069,293	-		DZA65_RS18845	0.28	-0.4
4,069,293	-		DZA65_RS18845	0.28	+1.1